cldn15a (cldn15)


Basic Information

Item Value
gene id cldn15a
gene name cldn15
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17966778 ~ 17971356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821438.1
GCTGGACACATCTCCCAGTGGCAGAGCAGACACACCACAGATACACTCTCAGATACACACTGACTTTCCAACACACCAGAATCAGATGTTCTGATCTTTATAACAggttttattgatttaaaaaaatatatctgaAATCTGGATATACTTTTCTTTGACTGCTGGTCTCAGGAGAGGTCATGGATCCAATTGTGGAAGTAGTGGCTTTGGTGCTGGGGTTCATTGGTTGGGTGATGGTGGGGGTCACCCTGCCGAACCGTTACTGGAGGACGTCCACCGTCGACGGGAACGTCATCACCACGTCTACCATCTATGAAAACTTGTGGATGTCGTGTGCGACGGATTCCACCGGGGTGCATAACTGCAGGGATTTCCCTTCGCTCCTCGCTTTGAGTGGTTACATTCAAGCGTCTCGTGCCTTGATGATCACATCGATAGTGTTTGGCACATTTGGACTGGTGGCGGCCCTGATTGGAGTGCAGTGTTCGAAGGCTGGAGGAGATAACTATGTTCTCAAAGGGAGGATTGCTGGCACTGCTGGAGTCCTGTTCATACTTCAAGGTCTGTGCACAATGGTCGCAGTGTCCTGGTACGCCTTCAACATCACTAGGGAATTCTTTGACCCTTTCCATCCCGGGACAAAGTATGAAATAGGAGAAGCACTTTACATCGGCTGGTGCTCCGCTGTGCTCGCCATCGCTGGAGGAGCCTGTCTCACCTGCTCCTGCAAAATGGCCACAGAGGAAAAATACCCGTTGCCTTATCAAACCAGGGGAACTGTATATTCTGGAGCTGCACCGACCAGAAGCGTGACTGCTACTAGTACTTACGGCAGAAAAGATTACGTTTGAACGGGATGTGAAAATGGAACTTTATCACCAAAAACTTTTTGAGATGCCCTGGTGTTCAAATTTTACACTACAGATGGAGCTTTTGTCTATGACTTTGTGGAAAAGATAAAGGTCCATCATGCCACTGTGCTGtatatattacaatataatGTGTGTATTCTGTATCACTTATAGCATTGAAATTATAGCATTaaagttgtaaaaagttaagCTACTAATCACCGGATTGGTGTACAAATGTACTAAATGCTTGCAATGATTATATTTATGTTTCCCTAAAGATGTTAGCAAAATTCATTTAcatacattcatttattttaaagattattttttggacattttaggcctttatttggatatGACAGATtggacttgaaaggggagagagaaggggaatgacatccagcaaagggccgcaggtcagagttgaacccgcggccgctgcgtcatggagtaaacctctatatatgggcgcccgctctaccaggtgaactAACCAGGCGCCCATTTAATCTTTTTCATAGGAATCCAATCATTTGATGATAAGACATTTGTTAAGGGGAAGGTCAAACCTGTGATAATCCagatatttctgtttgtgtgtgtgtgtatgtctatgtgtgtttgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagataTGTTTTGTACAGTTTTATAGATAGTACCTGTAAAAGACATTGCATAACAAGTCTTTCTGATGTTTGGTTTTCTACGATTGTGCACAATAAAATGTGTTATGCCAAACA

Function

symbol description
cldn15 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in lateral plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane.

NR:

description
claudin-15-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821438.1 True 1697 mRNA 0.44 5 17966778 17971356

Neighbor

gene id symbol gene type direction distance location
dnajc3b LOC103361354,LOC104927603,LOC100712384,LOC101476475 coding downstream 635 17956781 ~ 17966143 (-)
chd3 chd3 coding downstream 17121 17906100 ~ 17949657 (-)
si:dkey-19b23.8 LOC103361359,LOC104965567 coding downstream 96092 17864831 ~ 17870686 (-)
stim2b stim2,LOC106964335 coding downstream 236379 17687074 ~ 17730399 (-)
pcdh7b pcdh7,LOC102786590 coding downstream 741246 17119707 ~ 17225532 (-)
fis1 fis1 coding upstream 4597 17975953 ~ 17978588 (-)
zgc:103586 LOC104927619,LOC101475882,LOC102312414,LOC100699134 coding upstream 7363 17978719 ~ 17981175 (-)
LOC120572297 NA coding upstream 9860 17981216 ~ 17983917 (-)
mettl3 mettl3,LOC102781493 coding upstream 37808 18009164 ~ 18014135 (-)
LOC120572700 ccnb1ip1 coding upstream 48260 18019616 ~ 18022920 (-)
G144013 NA non-coding downstream 77126 17887278 ~ 17889652 (-)
G143898 NA non-coding downstream 203073 17762380 ~ 17763705 (-)
LOC120573415 NA non-coding downstream 281825 17682075 ~ 17684953 (-)
G143852 NA non-coding downstream 719145 17247376 ~ 17247633 (-)
G143837 NA non-coding downstream 998608 16967952 ~ 16968170 (-)
LOC120572704 NA non-coding upstream 20789 17992145 ~ 18002471 (-)
G144037 NA non-coding upstream 44893 18016249 ~ 18019306 (-)
LOC120573605 NA non-coding upstream 277087 18248443 ~ 18250057 (-)
G144275 NA non-coding upstream 728853 18700209 ~ 18700555 (-)
G144303 LOC103360597 non-coding upstream 857108 18828464 ~ 18830315 (-)
smim20 NA other downstream 112941 17852371 ~ 17853837 (-)
rbpjb rbpj,LOC106534282 other downstream 145700 17764186 ~ 17821078 (-)
tbc1d19 tbc1d19 other downstream 213763 17734332 ~ 17753015 (-)
LOC120572513 NA other downstream 717146 17230599 ~ 17249632 (-)
LOC120572710 nwd2 other downstream 1511850 16397933 ~ 16454928 (-)
LOC120573700 LOC100692994,LOC102197104,LOC102799729,LOC101170466 other upstream 2543 17973899 ~ 18080804 (-)
G144058 NA other upstream 142496 18113852 ~ 18123690 (-)
mrpl52 mrpl52,LOC102784052 other upstream 197858 18169214 ~ 18173027 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other upstream 564787 18536143 ~ 18539623 (-)
G144258 NA other upstream 623746 18595102 ~ 18597231 (-)

Expression


Co-expression Network