LOC120572304 (ipo8)


Basic Information

Item Value
gene id LOC120572304
gene name ipo8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18665191 ~ 18701577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821565.1
tgaaaaaagaaaaaaacctatGCACGTCGATAGAGCATCTCTGAACAAGATGTGTCGCACGTTTTTAGTTTTGTTAAACTTTTGAAACGTTGTTTGGATTATTCACGAAGGTTAAATGTATACATCGGGTAACTTTTCGGCTCGTAATAGCCATTTTTACAACGCTTTATTTTAGTTAATTTGATGCGCAACTGGAGGCCTAGCACCGATCACCAACGCCCATCAGGCCAACGTTCGAGATTtaagctaactaacgttagctgacgtcAAGCTCTAGCTACTTCACGgtACCAGTGCAAACATACTGAATTTCCAGCTGTACCTCCTGGAAGGCCTGGACAGGTGGAACCAGGATTCAGGGACTGCGGCGGTGACCAGCAGGCCGTCATCCCTCCTCACCTACGCCGGGACTCTGTCAACACCAACAGCCTGAAGGTGTTTGGCCGGACATTTGTTCCAACCTGCCAAATACACTGATATGATGCCTCTTTTGCACAACTATGTTACCGTGGATACAGACATGCTCCTGTCCAACCCTAAACACTTAGAGGTCATCTACAGCATGTGCAAAAAGGTGCTGACCATCGATGCAGGTGAGGACGCACAGTTTCACGCTGCCAAACTGTTGGAGGTCATCATCCTGCAGTGCAGAGGCAGAGGCATTGACCAGTGCATCCCTCTTTTTGTGGAAGCAGTTTTGGAGCGTTTGATGCGGGGGGTGAAGTCCAGTGAGCTGAGGACCATGTGCCTGCAGGTGGCCATCGCTGCTCTTTACTACAACCCAGCCCTACTCACTCACTCTGGAAAACATGCACTTCCAGCTCAACCCTCAGCCCATCACCACCCACTTCATCAACCAGTGGATGAATGACACAGAGTTCTTCCTGGGGCTCCATGACCGTAAGATGTGCATCATCGGCCTGAGCGTGCTGATAGAGCTGCCCAGTCGGCCGGCAGTGCTGGAGGGAGTCGCCGCCCAGATTGTCCCCTCCATCCTGCTCCTGTTCCTGGGCCTCAAACACCTCTACGCATCCCGCCTTGTCAACAAACCAGACCTGCTGGCCCATGCATGGGCACAGGAAGAAGACCAGAATGGTGAGAAAAGATGGGCATGGACAGAACAAGGACGACGTtaggaaagtaaaaaaaaaacggagtTGGGAAGATGGAGTGCAGGACAGAGGCAAAGGGACTAATGTAGAATGaatacagacagaaagaaattcgagagaagaaaagaaataggCTTAGTGATGATAGTGAAATGAGATTCTCAATTTTTGCCAACATCAGATCTCCCACTACTTGAATCTTCATTCAGCTCTGAGCTGAGCTCAAATGAACTGCACCACATTTACTTTCTCTTCCCCACAGGCTCTTACTTTGCTTCAGTCAAGCGTAAAGGAATTTGATTCCCAAACCTTGTCTACTGCTTGTGGGGCAGACTGATGAATTAAAGGAGAATTcaggccaatttttacgttagtCTTGATCGCAata
>XM_039821566.1
tgaaaaaagaaaaaaacctatGCACGTCGATAGAGCATCTCTGAACAAGATGTGTCGCACGTTTTTAGTTTTGTTAAACTTTTGAAACGTTGTTTGGATTATTCACGAAGGTTAAATGTATACATCGGGTAACTTTTCGGCTCGTAATAGCCATTTTTACAACGCTTTATTTTAGTTAATTTGATGCGCAACTGGAGGCCTAGCACCGATCACCAACGCCCATCAGGCCAACGTTCGAGATTtaagctaactaacgttagctgacgtcAAGCTCTAGCTACTTCACGgtACCAGTGCAAACATACTGAATTTCCAGCTGTACCTCCTGGAAGGCCTGGACAGGTGGAACCAGGATTCAGGGACTGCGGCGGTGACCAGCAGGCCGTCATCCCTCCTCACCTACGCCGGGACTCTGTCAACACCAACAGCCTGAAGGTGTTTGGCCGGACATTTGTTCCAACCTGCCAAATACACTGATATGATGCCTCTTTTGCACAACTATGTTACCGTGGATACAGACATGCTCCTGTCCAACCCTAAACACTTAGAGGTCATCTACAGCATGTGCAAAAAGGTGCTGACCATCGATGCAGGTGAGGACGCACAGTTTCACGCTGCCAAACTGTTGGAGGTCATCATCCTGCAGTGCAGAGGCAGAGGCATTGACCAGTGCATCCCTCTTTTTGTGGAAGCAGTTTTGGAGCGTTTGATGCGGGGGGTGAAGTCCAGTGAGCTGAGGACCATGTGCCTGCAGGTGGCCATCGCTGCTCTTTACTACAACCCAGCCCTACTCACTCACTCTGGAAAACATGCACTTCCAGCTCAACCCTCAGCCCATCACCACCCACTTCATCAACCAGTGGATGAATGACACAGAGTTCTTCCTGGGGCTACTACATCTGCACTCAACTCACATCGgccgcaaagtgacgcatgctcaactcacatcgggtagtgacaccgTGTCCCGACAGTAGcta
>XM_039821567.1
tgaaaaaagaaaaaaacctatGCACGTCGATAGAGCATCTCTGAACAAGATGTGTCGCACGTTTTTAGTTTTGTTAAACTTTTGAAACGTTGTTTGGATTATTCACGAAGGTTAAATGTATACATCGGGTAACTTTTCGGCTCGTAATAGCCATTTTTACAACGCTTTATTTTAGTTAATTTGATGCGCAACTGGAGGCCTAGCACCGATCACCAACGCCCATCAGGCCAACGTTCGAGATTtaagctaactaacgttagctgacgtcAAGCTCTAGCTACTTCACGgtACCAGTGCAAACATACTGAATTTCCAGCTGTACCTCCTGGAAGGCCTGGACAGGTGGAACCAGGATTCAGGGACTGCGGCGGTGACCAGCAGGCCGTCATCCCTCCTCACCTACGCCGGGACTCTGTCAACACCAACAGCCTGAAGATATGATGCCTCTTTTGCACAACTATGTTACCGTGGATACAGACATGCTCCTGTCCAACCCTAAACACTTAGAGGTCATCTACAGCATGTGCAAAAAGGTGCTGACCATCGATGCAGGTGAGGACGCACAGTTTCACGCTGCCAAACTGTTGGAGGTCATCATCCTGCAGTGCAGAGGCAGAGGCATTGACCAGTGCATCCCTCTTTTTGTGGAAGCAGTTTTGGAGCGTTTGATGCGGGGGGTGAAGTCCAGTGAGCTGAGGACCATGTGCCTGCAGGTGGCCATCGCTGCTCTTTACTACAACCCAGCCCTACTCACTCACTCTGGAAAACATGCACTTCCAGCTCAACCCTCAGCCCATCACCACCCACTTCATCAACCAGTGGATGAATGACACAGAGTTCTTCCTGGGGCTCCATGACCGTAAGATGTGCATCATCGGCCTGAGCGTGCTGATAGAGCTGCCCAGTCGGCCGGCAGTGCTGGAGGGAGTCGCCGCCCAGATTGTCCCCTCCATCCTGCTCCTGTTCCTGGGCCTCAAACACCTCTACGCATCCCGCCTTGTCAACAAACCAGACCTGCTGGCCCATGCATGGGCACAGGAAGAAGACCAGAATGGTGAGAAAAGATGGGCATGGACAGAACAAGGACGACGTtaggaaagtaaaaaaaaaacggagtTGGGAAGATGGAGTGCAGGACAGAGGCAAAGGGACTAATGTAGAATGaatacagacagaaagaaattcgagagaagaaaagaaataggCTTAGTGATGATAGTGAAATGAGATTCTCAATTTTTGCCAACATCAGATCTCCCACTACTTGAATCTTCATTCAGCTCTGAGCTGAGCTCAAATGAACTGCACCACATTTACTTTCTCTTCCCCACAGGCTCTTACTTTGCTTCAGTCAAGCGTAAAGGAATTTGATTCCCAAACCTTGTCTACTGCTTGTGGGGCAGACTGATGAATTAAAGGAGAATTcaggccaatttttacgttagtCTTGATCGCAata

Function

symbol description
ipo8 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytosol and nuclear envelope. Orthologous to human IPO8 (importin 8).

NR:

description
PREDICTED: importin-8 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821565.1 True 1500 mRNA 0.48 6 18665191 18701577
XM_039821566.1 False 980 mRNA 0.49 6 18666097 18701577
XM_039821567.1 False 1459 mRNA 0.48 6 18665191 18701577

Neighbor

gene id symbol gene type direction distance location
rgp1 rgp1 coding downstream 27199 18632078 ~ 18637992 (-)
pik3c3 pik3c3 coding downstream 39119 18612673 ~ 18626072 (-)
faah2b faah2 coding downstream 104138 18551540 ~ 18561053 (-)
nat8l nat8l,LOC106918818,LOC104966448,LOC106577818 coding downstream 142450 18498740 ~ 18522741 (-)
LOC120573208 ptgr1 coding downstream 227595 18431393 ~ 18437596 (-)
trnag-gcc_1 NA coding upstream 35505 18737082 ~ 18737152 (-)
ankrd53 NA coding upstream 140499 18842076 ~ 18845520 (-)
si:dkey-185m8.2 LOC104955459 coding upstream 176544 18878121 ~ 18886053 (-)
LOC120573249 NA coding upstream 201389 18902966 ~ 18912675 (-)
trmt10b trmt10b coding upstream 236541 18938118 ~ 18945452 (-)
LOC120573605 NA non-coding downstream 415134 18248443 ~ 18250057 (-)
G144037 NA non-coding downstream 645885 18016249 ~ 18019306 (-)
LOC120572704 NA non-coding downstream 662720 17992145 ~ 18002471 (-)
G144013 NA non-coding downstream 775539 17887278 ~ 17889652 (-)
G143898 NA non-coding downstream 901486 17762380 ~ 17763705 (-)
G144303 LOC103360597 non-coding upstream 126887 18828464 ~ 18830315 (-)
G144346 NA non-coding upstream 234398 18935975 ~ 18936227 (-)
LOC120572676 NA non-coding upstream 291892 18993469 ~ 19002231 (-)
G144422 NA non-coding upstream 397005 19098582 ~ 19098840 (-)
G144423 NA non-coding upstream 397317 19098894 ~ 19099197 (-)
G144258 NA other downstream 67960 18595102 ~ 18597231 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other downstream 125568 18536143 ~ 18539623 (-)
mrpl52 mrpl52,LOC102784052 other downstream 492164 18169214 ~ 18173027 (-)
G144058 NA other downstream 541501 18113852 ~ 18123690 (-)
LOC120573700 LOC100692994,LOC102197104,LOC102799729,LOC101170466 other downstream 584387 17973899 ~ 18080804 (-)
clcn3 clcn3 other upstream 261289 18962866 ~ 19056782 (-)
prkd4 LOC103376196 other upstream 546373 19247950 ~ 19266353 (-)
LOC120572670 NA other upstream 581356 19282933 ~ 19353306 (-)
si:cabz01074946.1 NA other upstream 955506 19657083 ~ 19665792 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other upstream 1075103 19776680 ~ 19797530 (-)

Expression


Co-expression Network