rbm4.1 (LOC104952189,LOC103359711,LOC100708584,LOC102786441)


Basic Information

Item Value
gene id rbm4.1
gene name LOC104952189,LOC103359711,LOC100708584,LOC102786441
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4369182 ~ 4373673 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821583.1
TAGCACCATGGATGTAGCGCTTGGCGCTGTAATATAAATCCCACCCAAAAGATGCTAACCGGGTAGCTTAGATGTATGTCTTTGCCATGGTTGTCACGAGCTGGTAGTGCCAGTCGGTAGACGGTGGTCATCTCATTCTCCGAGGGACTAGACGCACATTGCAGCTTTAAAAAGTAACGTGGAAGCTCCACAATGGTGAAAATATTCATCGGGAACTTGTCACCAGACACTACATCGGACGAACTTCGCTCTCTCTTCTCCCAATATGGCAAGATTGGAGAATGCAGTATTGTCAAGAACTTTGGCTTTGTGCACATGGATGACAAAGCGGAGGCGGAAGAAGCCATCAGAAACCTCCACCATTATGAGCTAAACGGCCAGCCTATGAATGTAGAATTGAGCCGTGGCAAGTCAAAAGGATCCACTAAACTACATGTTGGCAACATTGCCTGTACTAACCAGGAGCTGAGGGCCAAGTTTGAAGAGTTTGGCTCTGTGTTGGAGTGTGACATAGTAAAAAACTATGCTTTTGTTCACATGGATCGAATAGAGGATGCCATGGAGGCCATTAATCAGTTAGACAACACAGCTTTTAAAGgcAAACTGATGAGCGTGAAGCTTTCGACTAGCCGCCTGCGTACTGCGCCGGGAATGGGAGACAGATCGGGTTGTTATCGTTGCGGGCAGGAAGGCCACTGGTCCAAAGAATGCCCTCTAGACCAAAATGGCTACCACAGAAACGGCTCAGAGCCAAAGTCTGATGGATACGATGCCTCGAGATTTGACGGGCGTGCTTGCAACAGGGGTTATCATCCGGACTTCAGTGGCGATCCAGATTACGGTGGCTATGCTCCTGTACATGGTTTTTCCCGTGGTTCTGGTCACAGCAGCGGCATGGCAGGGTACAGAAGGGGTTCAGGCTACGAGAGCGCAATGAGATACGGGCCGGTTCCAGGTCAAGGCATTAGCACTGATGCTGAACATAGCATGGCTCGGATGTATGGCAGTGAGGCGGCATACATGAGCAACGGCTCACTCTATGGCGCGGTACCAGCCTACCCGATGCGACGGTCGTCTTACGAGGAAAGGGATCCGTACGGTGTCGTGGACTACTACGGGAAGTACAGGGCCAATTCTTACGGAGGCAGTTATTTTGAGGAACGTCGCGCTGTCCACTTGCCGGCTCCATCAACATCCTCCACAGCTTTAATGAGGGAACGTCTGCCCCCCTCTAGCCACGACCCATACGAGTgccctccccttcctcctccaccaGCCCCAGTCTCCTCATACTACGCACGTGACCGGAGTCCGATTCGGAGAGTCCCCGTCGAGGCAGATGGATACTCATATGAGCGTTCGCGCATTTCCCCTGTGCCCGCCCCCCCAAGAGGTTCTACCTATGACCATCCGCGGGATCCCGCCGCTGATCGGGCAAGATATGCATACTAATCCTTGTAACATACAGCCAGGTTAGAGTTCTCTGACATTCAGTGGATAAGATAGCCTACGTGCCAGAGGAATCACTGAAAACGAAACAATCATATCTTATTGGTAATATCGAAAGCAAAAGTCAGCCCTCAGTGTGTTTGGGTAGTAAGAATAAGGTTACAATAAAGCTTACCAACCACAATAGCCAATAAGTAGATTTCAATATGAATAGTTGAATACCCTCACATACTATGATCTCATTCCAGGTACTTCAAAATGCAGTACAATTAATGATCAGTCGACCACTTTCATTGTCCTATTTACGTGTTGTGGTATTAGTGCAGTTCTGAGATGGCTTAGCCTAGGTGCCGATACTGGGTCTATCTACAACGTGGTTGATGTCTATTCACGAAACAATAAGACCTGAATTATTGCTCCTCTGAAAGTAGCTATATGTTATATACACTATTTAGACTCAGTTAATAGAAACAAATTAAATTGGTGCATGTTTTGTTAAAGGGGAGTTTTAGTCACATGAATTGattttaatcctttttttttttttagcagcatCTCAAACTATGTGCATTttagtgtatttgtgtttgtataaATTCAAATTGTTACTTTACTGCATATGTGAGGCAATgacaaaacacatttgaataCTGTATACTTCATCACCTACATTGTTTAACCTGTGGGATGTCCCACCTGTACCAAATATGGACCTGCAGTTAAGTTGAACGTTTTATCAAGCTGCATcgtaatcatgttttttttgtccgtATAGGCACATTGATTTTCATTGCTGTGATAAAGATAAGGCCTCATATCTTGAACATATGTTTGAGTTTCATAATGAAAATCACCTTAATTGCCTATGCTGTCTGTCTTGATTTCTATCAATGAGGTTCAAATTAAAATCTGTTTGTCTAAAGTCTTAAAA

Function

NR:

description
PREDICTED: RNA-binding protein 4.1-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13187 RBM4; RNA-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821583.1 True 2380 mRNA 0.45 3 4369182 4373673

Neighbor

gene id symbol gene type direction distance location
sf1 sf1,LOC104940820 coding downstream 830 4353601 ~ 4368352 (-)
pygmb pygm,LOC106531364,LOC100706889,LOC107384765 coding downstream 17499 4332263 ~ 4351683 (-)
slx1b LOC103361641 coding downstream 56316 4302645 ~ 4312866 (-)
ing2 ing2 coding downstream 109369 4256635 ~ 4259813 (-)
adam19a LOC108242304,LOC103148901 coding downstream 250798 3803986 ~ 4118384 (-)
LOC120572314 LOC104952188 coding upstream 517 4374190 ~ 4379514 (-)
map4k2 map4k2 coding upstream 8110 4381783 ~ 4433883 (-)
men1 men1 coding upstream 61932 4435605 ~ 4447350 (-)
si:dkey-106g10.7 LOC103359705 coding upstream 112897 4486570 ~ 4498207 (-)
ecsit NA coding upstream 144703 4518376 ~ 4528012 (-)
G141042 NA non-coding downstream 49540 4318901 ~ 4319642 (-)
G141041 LOC103361642,LOC104959592,LOC105907194 non-coding downstream 53638 4314178 ~ 4315544 (-)
G140999 NA non-coding downstream 158412 4209167 ~ 4210770 (-)
G140997 NA non-coding downstream 304442 4064196 ~ 4064740 (-)
G140926 NA non-coding downstream 694719 3674091 ~ 3674463 (-)
G141109 NA non-coding upstream 104757 4478430 ~ 4482046 (-)
G141114 NA non-coding upstream 110065 4483738 ~ 4484782 (-)
G141115 NA non-coding upstream 112230 4485903 ~ 4486466 (-)
G141117 NA non-coding upstream 115627 4489300 ~ 4489504 (-)
G141123 NA non-coding upstream 140334 4514007 ~ 4526194 (-)
LOC120573533 NA other downstream 37163 4321764 ~ 4332019 (-)
G141027 NA other downstream 93908 4274651 ~ 4275274 (-)
G141003 NA other downstream 213635 4154924 ~ 4155547 (-)
LOC120573530 NA other downstream 1225993 3139121 ~ 3143189 (-)
arsj arsj other downstream 1747082 2597834 ~ 2622100 (-)
G141145 NA other upstream 267822 4641495 ~ 4664198 (-)
G141159 taf6l other upstream 286948 4660621 ~ 4661111 (-)
peli3 LOC100695529,LOC102800049,LOC102202559,LOC103148873,LOC106956141,LOC107098130,LOC103480122 other upstream 399955 4773628 ~ 4829162 (-)
G141219 NA other upstream 585006 4958679 ~ 4960005 (-)
G141234 NA other upstream 726032 5099705 ~ 5100082 (-)

Expression


Co-expression Network