LOC120572314 (LOC104952188)


Basic Information

Item Value
gene id LOC120572314
gene name LOC104952188
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4374190 ~ 4379514 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821584.1
TAAACGTTGGTTTACGATCCGCCATTAAATCAGAAGAAGAACAAACGGTAGCATCGTCACGGGTGCAAGCGCCATTTCACTCTTCATTCATTGCGTCGAGGCCTTCATCGTTTAAGTGGATACACAGAACTTCATTATGGTGAAAATATTTATTGGTAACCTTGCCTGCAATACCGAACCGGCGGAGCTGCGTGAACTCTTCGAGAAGTATGGTGAAGTCTCAGAATGTGACATTGTCAAAAACTATGGTTTTGTACACATGAACAACAAATCTGAAGCAGAGGAGGCCATTCAAAACCTTCACCAGTACGAGTTgcatggctgggccatgaatgTGGAGATGAGCAAAGGGAGGCCCAAGTCCACCACCAAACTGCATGTCAGCAACCTTGGCGAAGGGGTCACCACTGATGTTCTGCGGGCCAAGTTTGAAGAGTTTGGCACTGTGGTGGAGTGTGACATAGTGAAGGACTATGCCTTTATTCACATGGAGCGAATGGAAGATGCCATGGATGCCATCAATAAGCTGGACAACACCGCCTACAAAGGCAAGCTGATGAGCGTACAGCTGTCCACCAGTCGGCTGCGCACGGCCCCCGGAATGGGAGATCATACCGGCTGCTATGTCTGCGGGAAACATGGTCACTGGTCGAAAGATTGTCGAGTCAGTCGGAACGGTAGCCACGGTGACGGCGCAAGAGGTCGCAGCGGCCGGGGCCCCCCACGTGGTCCCCCGGGTTATGGCAGGGGCAACTACAGGATGGACTCACCTCCAGGAGCTGATTACATGGGTAGCTCTGCGTATAGTCGGTCTAGTTACGGAGGTGGGATGCCGCCTCCCCCTCGTAGGCTTAGCGGCTACAGCTCTGAGCTGGGGGATAGGTACGCCAGCAGAGCACCAGGCTCCTTTGCTGAGAGGTCATCAGCCTATGACCGTGAACGTCTCTATAGCAGTGTTGACTATTATGAGAAGTACAGAGCTCGCCCTTATGGCTCAAGCTATTTCGAGGATCGTCGCATATCCtatctcccccctcccccacctcccccttcctccctctcaaAGTTCTCCAGTATAGATCCATATGATCGTCGGCCACTTCCTCCATCTTCATCCGCTGCCGCATACTATGCACGAGACCGCAGCCCAATCAGACGAGTACCAGTCTCCTCGGCTGGCTACGCCTATGAGTCAACACGGCTGTCCCCGTTGTCAGGCTCCAGGAGCTCCCACGCTCCTCCACGACCCAAGGATCGCTACGCGCCATACTAAAGCCATGGTGCCAAGGTCTGTGAACTGCAGGACTTTTGCTGTCATTTCTTCAAGTTACATGATTCCATCAGTCTGCGGGATGTGCGGCAAAGCATTTGAGTTGAGTCGGCATCTTCCAGACACCTGACATGCCAGTTGTCTGCAGATGAATCGTCCTTTCAATCATATTCACATAACCGGTTTTCAATAAGACTAAGGATGATTAGCAAAATGCGCAGTTTGACATTTATGATgtataaaacaataatttgcTCCCATGCTCTGCAGGTCTTCAGCTCAGTTTTTagccatgtcttttttttcttttcttttttcttaccTGTTACTTCCTGAAATGAAGCAATTGTTAATTGTTTGGCTTCGGTTTGTCATTTAGAAAATGTTCTTGTTTCCTTAAATATATGAAAATgtaccttctttttttattttattttttaatggaaTGAGGTTTAACCCGTGCTGCATCAGTTGCGTGTCGTGCAGAATCCTCTTGATCTGATTATATCTGGTTATGTggataaagatttttttttttttttttttaaatgatcatcATTGGTGTCTATCAATGTGCTGTGAAATGTTTTCTTACAGCTTAAACCAGTAGTTTTCACAGAGAAGTTGCTTCTTTTATGCTTGAAAGGGTGAAAGACTCAGGCAGTGGTCTAGTTGTGGGTGCGAAAGAACCTGCACTCTTCACCCTCTGAAGTACACGAATGGACTCAGTGATTCACCCAGAAGAAGACAATAGAGAAATGAATCCATATCCATGCTACTGACCTGGCTGAGTGTTCAGTTAGGACACATAATCCCACTTTGAGTTAGTATCTATGGTAAAACAAATAATCTCACATTCCAGCCTCATTGTTTGTAATTTGAGTGTGTGTctacaaaatataaaattgaTACATTTTACGACACGTAATGAGGTGTCTGCTGGTCTGAAATAGTTAAAAATAACATTAAGTgacaccaaaacaaaaatgtcacatgACATGCACTCTGCAACTTAGGAACATCTTGACTGTTTTCTTCCCAATGGTAATGTTGCACACTTTGCCCACAGCTGCCAACAGAAAATAACCTCCCATCACTTGAATTTTAGTGTGGGATGGATGTTCATTGTATCCATACAACACAGCGTAAGCAGATAAACGTGAGACAGGACTCAGGGCTTGGGCTGTATAAGTCATGAGGCACTTTCAAAGGTGCCTTTGTTCGTTTTGCATAAAGGTGGATTTgaagtttgtatttttcataCTAGCTGTAAAAGTACCAGCATACattaaaaatctaaaatgagtatgatttttaataaaaaccaaacttatTTTGGTGACATTTTTCAGTTCTTTGTTTGAAACCCAATTTGATGGTGTATTGTGGTTGCAGTGGAACTAttcactataaaaaaaaaaattgtttagaACTTTGTAAGGGCATTGAATTTATTTTTCCCACAACAGTGTATTAGAAGTGAACAATATGGATAATGTCACAGCatatgcatttttatttatatatctcAGTTGAGAGACCAAAATCCACATACTTGCTCTCGATGATGCAAAAATCAAAATATTGCCATTAAACAGTTCTACTCATtga
>XM_039821585.1
CATTAAATCAGAAGAAGAACAAACGGTAGCATCGTCACGGGTGCAAGCGCCATTTCACTCTTCATTCATTGCGTCGAGGCCTTCATCGTTTAAGTGGTGAGTTAAAGATTGATACACAGAACTTCATTATGGTGAAAATATTTATTGGTAACCTTGCCTGCAATACCGAACCGGCGGAGCTGCGTGAACTCTTCGAGAAGTATGGTGAAGTCTCAGAATGTGACATTGTCAAAAACTATGGTTTTGTACACATGAACAACAAATCTGAAGCAGAGGAGGCCATTCAAAACCTTCACCAGTACGAGTTgcatggctgggccatgaatgTGGAGATGAGCAAAGGGAGGCCCAAGTCCACCACCAAACTGCATGTCAGCAACCTTGGCGAAGGGGTCACCACTGATGTTCTGCGGGCCAAGTTTGAAGAGTTTGGCACTGTGGTGGAGTGTGACATAGTGAAGGACTATGCCTTTATTCACATGGAGCGAATGGAAGATGCCATGGATGCCATCAATAAGCTGGACAACACCGCCTACAAAGGCAAGCTGATGAGCGTACAGCTGTCCACCAGTCGGCTGCGCACGGCCCCCGGAATGGGAGATCATACCGGCTGCTATGTCTGCGGGAAACATGGTCACTGGTCGAAAGATTGTCGAGTCAGTCGGAACGGTAGCCACGGTGACGGCGCAAGAGGTCGCAGCGGCCGGGGCCCCCCACGTGGTCCCCCGGGTTATGGCAGGGGCAACTACAGGATGGACTCACCTCCAGGAGCTGATTACATGGGTAGCTCTGCGTATAGTCGGTCTAGTTACGGAGGTGGGATGCCGCCTCCCCCTCGTAGGCTTAGCGGCTACAGCTCTGAGCTGGGGGATAGGTACGCCAGCAGAGCACCAGGCTCCTTTGCTGAGAGGTCATCAGCCTATGACCGTGAACGTCTCTATAGCAGTGTTGACTATTATGAGAAGTACAGAGCTCGCCCTTATGGCTCAAGCTATTTCGAGGATCGTCGCATATCCtatctcccccctcccccacctcccccttcctccctctcaaAGTTCTCCAGTATAGATCCATATGATCGTCGGCCACTTCCTCCATCTTCATCCGCTGCCGCATACTATGCACGAGACCGCAGCCCAATCAGACGAGTACCAGTCTCCTCGGCTGGCTACGCCTATGAGTCAACACGGCTGTCCCCGTTGTCAGGCTCCAGGAGCTCCCACGCTCCTCCACGACCCAAGGATCGCTACGCGCCATACTAAAGCCATGGTGCCAAGGTCTGTGAACTGCAGGACTTTTGCTGTCATTTCTTCAAGTTACATGATTCCATCAGTCTGCGGGATGTGCGGCAAAGCATTTGAGTTGAGTCGGCATCTTCCAGACACCTGACATGCCAGTTGTCTGCAGATGAATCGTCCTTTCAATCATATTCACATAACCGGTTTTCAATAAGACTAAGGATGATTAGCAAAATGCGCAGTTTGACATTTATGATgtataaaacaataatttgcTCCCATGCTCTGCAGGTCTTCAGCTCAGTTTTTagccatgtcttttttttcttttcttttttcttaccTGTTACTTCCTGAAATGAAGCAATTGTTAATTGTTTGGCTTCGGTTTGTCATTTAGAAAATGTTCTTGTTTCCTTAAATATATGAAAATgtaccttctttttttattttattttttaatggaaTGAGGTTTAACCCGTGCTGCATCAGTTGCGTGTCGTGCAGAATCCTCTTGATCTGATTATATCTGGTTATGTggataaagatttttttttttttttttttaaatgatcatcATTGGTGTCTATCAATGTGCTGTGAAATGTTTTCTTACAGCTTAAACCAGTAGTTTTCACAGAGAAGTTGCTTCTTTTATGCTTGAAAGGGTGAAAGACTCAGGCAGTGGTCTAGTTGTGGGTGCGAAAGAACCTGCACTCTTCACCCTCTGAAGTACACGAATGGACTCAGTGATTCACCCAGAAGAAGACAATAGAGAAATGAATCCATATCCATGCTACTGACCTGGCTGAGTGTTCAGTTAGGACACATAATCCCACTTTGAGTTAGTATCTATGGTAAAACAAATAATCTCACATTCCAGCCTCATTGTTTGTAATTTGAGTGTGTGTctacaaaatataaaattgaTACATTTTACGACACGTAATGAGGTGTCTGCTGGTCTGAAATAGTTAAAAATAACATTAAGTgacaccaaaacaaaaatgtcacatgACATGCACTCTGCAACTTAGGAACATCTTGACTGTTTTCTTCCCAATGGTAATGTTGCACACTTTGCCCACAGCTGCCAACAGAAAATAACCTCCCATCACTTGAATTTTAGTGTGGGATGGATGTTCATTGTATCCATACAACACAGCGTAAGCAGATAAACGTGAGACAGGACTCAGGGCTTGGGCTGTATAAGTCATGAGGCACTTTCAAAGGTGCCTTTGTTCGTTTTGCATAAAGGTGGATTTgaagtttgtatttttcataCTAGCTGTAAAAGTACCAGCATACattaaaaatctaaaatgagtatgatttttaataaaaaccaaacttatTTTGGTGACATTTTTCAGTTCTTTGTTTGAAACCCAATTTGATGGTGTATTGTGGTTGCAGTGGAACTAttcactataaaaaaaaaaattgtttagaACTTTGTAAGGGCATTGAATTTATTTTTCCCACAACAGTGTATTAGAAGTGAACAATATGGATAATGTCACAGCatatgcatttttatttatatatctcAGTTGAGAGACCAAAATCCACATACTTGCTCTCGATGATGCAAAAATCAAAATATTGCCATTAAACAGTTCTACTCATtga

Function

NR:

description
PREDICTED: RNA-binding protein 4.1-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13187 RBM4; RNA-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821584.1 True 2881 mRNA 0.44 4 4374190 4379514
XM_039821585.1 False 2873 mRNA 0.44 4 4374190 4379492

Neighbor

gene id symbol gene type direction distance location
rbm4.1 LOC104952189,LOC103359711,LOC100708584,LOC102786441 coding downstream 517 4369182 ~ 4373673 (-)
sf1 sf1,LOC104940820 coding downstream 5838 4353601 ~ 4368352 (-)
pygmb pygm,LOC106531364,LOC100706889,LOC107384765 coding downstream 22507 4332263 ~ 4351683 (-)
slx1b LOC103361641 coding downstream 61324 4302645 ~ 4312866 (-)
ing2 ing2 coding downstream 114377 4256635 ~ 4259813 (-)
map4k2 map4k2 coding upstream 2269 4381783 ~ 4433883 (-)
men1 men1 coding upstream 56091 4435605 ~ 4447350 (-)
si:dkey-106g10.7 LOC103359705 coding upstream 107056 4486570 ~ 4498207 (-)
ecsit NA coding upstream 138862 4518376 ~ 4528012 (-)
sstr1b LOC104956125,LOC103370120,LOC106577512 coding upstream 658604 5038118 ~ 5084391 (-)
G141042 NA non-coding downstream 54548 4318901 ~ 4319642 (-)
G141041 LOC103361642,LOC104959592,LOC105907194 non-coding downstream 58646 4314178 ~ 4315544 (-)
G140999 NA non-coding downstream 163420 4209167 ~ 4210770 (-)
G140997 NA non-coding downstream 309450 4064196 ~ 4064740 (-)
G140926 NA non-coding downstream 699727 3674091 ~ 3674463 (-)
G141109 NA non-coding upstream 98916 4478430 ~ 4482046 (-)
G141114 NA non-coding upstream 104224 4483738 ~ 4484782 (-)
G141115 NA non-coding upstream 106389 4485903 ~ 4486466 (-)
G141117 NA non-coding upstream 109786 4489300 ~ 4489504 (-)
G141123 NA non-coding upstream 134493 4514007 ~ 4526194 (-)
LOC120573533 NA other downstream 42171 4321764 ~ 4332019 (-)
G141027 NA other downstream 98916 4274651 ~ 4275274 (-)
G141003 NA other downstream 218643 4154924 ~ 4155547 (-)
LOC120573530 NA other downstream 1231001 3139121 ~ 3143189 (-)
arsj arsj other downstream 1752090 2597834 ~ 2622100 (-)
G141145 NA other upstream 261981 4641495 ~ 4664198 (-)
G141159 taf6l other upstream 281107 4660621 ~ 4661111 (-)
peli3 LOC100695529,LOC102800049,LOC102202559,LOC103148873,LOC106956141,LOC107098130,LOC103480122 other upstream 394114 4773628 ~ 4829162 (-)
G141219 NA other upstream 579165 4958679 ~ 4960005 (-)
G141234 NA other upstream 720191 5099705 ~ 5100082 (-)

Expression


Co-expression Network