usp12b (usp12,LOC107707922,LOC103480258,LOC103363176)


Basic Information

Item Value
gene id usp12b
gene name usp12,LOC107707922,LOC103480258,LOC103363176
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 22526589 ~ 22550975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821618.1
TCTGTGCATTTTGACGGCACTATGCAGAAAGCTCTCCCGGAACTCTGCAGCCGCATCGGCTCTAATTTCAATATCGGGGTTCGGTCCAACATGGCGGCTTACGGATGGAAATACTGATGACAGTCCGAAAGATCGCCTCGATTTGTACGATGggCGCCAATGCCTCTGCCTTGGAAAAGGAGATTGGACCGGAACAGTTTCCCGTTAATGAACACTACTTTGGATTGGTCAACTTTGGCAACACCTGCTACTGTAACTCAGTGCTGCAGGCTCTGTATTTCTGTCGACCGTTCAGGGAGAAGGTGTTGGCGTACAAGgtGCAGCCGCGTCGTAAGGAGTCCCTCCTCACCTGTCTATCCGACCTGTTCAACAGCATTgccacacagaagaagaaagtcGGAGTCATCCCTCCCAAGAAATTCATCTCACgactgagaaaagaaaatgAGCTGTTTGACAACTACATGCAGCAGGACGCCCACGAATTCCTCAACTACCTCCTCAACACCATCGCAGACCTGCTGCAGGAGGAGAAGAGCCAGGAGCGACAGCAGAATGGAAAACTGGTGCAgaatggaggaggagggacaggtggaggaggaggaagtggaggaggaagtgaggGAGGAGAAGGGGAAGGAGGAAAGGAGACACAACAGACTTGGGTCCATGAGATTTTCCAGGGAACACTGACCAACGAGACTCGCTGCCTCAACTGTGAAGCTGTGAGCAGTAAAGACGAGGACTTCCTGGATCTGTCGGTGGATGTGGAGCAGAACACCTCCATCACTCACTGTCTCAGGGGCTTCAGCAACACAGAGACGTTATGTAGTGAATACAAATACTACTGTGAGCAGTGTCGCAGCAAACAGGAAGCCCAGAAAAGgATGAGGGTAAAGAAGCTACCGATGATCCTGGCCCTCCACCTGAAGCGCTTTAAATACATGGACCAGCTGCACCGCTACACCAAACTGTCCTATCGCGTTGTCTTCCCCCTGGAGCTGCGCCTCTTCAACACGTCCGGGGACGCCACCAACCCCGACCGCATGTACGACCTGGTGGCTGTCGTCGTACACTGTGGCAGTGGGCCAAACCGCGGACACTACATCACCATCGTCAAGAGCCACGGCTTCTGGCTGCTGTTTGATGACGACATCGTAGAGAAAATCGATGCTCAGGCGATCGAGGAGTTCTACGGTCTGACATCGGACATTTCCAAGAACTCTGAATCAGGATACATCCTGTTCTACCAGTCCAGAGACTGAACCAGACAGCGGTAAATCCCCCACAGACTGTCACTCAACAGAGGGGAAGGCTCTTATGGCTGCCACCGACTCCGCCCAGTAGGCTCACATAAGCGTCCAGGCTCTATATCCTGCAGGGGGAGCTTTGCACTGGTGCGCCACTCGGATCGGTTAAGACGTGCAGGTCGCATGCCAGCCTCCTGGATTACAACCATTCAAATCCTCTGAGCCCACACTGCaaaaagcactttaaaacaaaccaacaagATGGCTCAATCTGTAACACTCGCTTTGCATTGGGGCAACTGGGAAGACCGAGTAACACCAATCCAAGAGGCTGACATCGCCGTGTCCACAGTGATCCATTTTTGGAGGTAAAAGCCGTTTGGGACTGTTGAGATGATGTAGAGTAACCAAATCAACTGTTTCAGATGAGACACAGGATTGCTATCCTCCTCGTCACGGTAACCACCAGTGTCATCacagtcttctttttttttgtgtgtgtgtgtgtgtaatataccGTGCTAAATAAGCTTTAGGCTAACACACAGGTACCATGCGTTCACTCCCCAAAAATCCTTCTGCACACGGAGAAACTAATATCTGACAGCCTTGTTAAAAGCCCCACCTGCCAAAACCACTGACACAGCCTTTAGTGATTGAAAATCTTGAACGTGTACTTGGCGCGCAGCTCATTGAAGTTGCTAGTTTGCAGTGTTTGTATCATGAAGTGGTGCTAATAACGTATAGTGTTATAGAGCgtgaaatgaaaacaagccaccAGAGAGATGTGGAAGAATCCGATAGAGAGGCTCATTAGGTTAGTTTTTTACCAAGAAATTATCttgagtattaaaaaaaaaaaaaaaaaaggtaattggagagagaaaaaaaatacgaAATGCTGTCCAAAAATACAATTACATTAAAAGAGGGGCTCGGTTTCAGTAAATTGCAGTTAAAGTCAGTTTGTCCAATCTAGGCATTCTTCAGCAAAAATTGGCAAAAACAATGAGCCTCACAGATCACCAACAATCCTGTTTCAGTTTTTAAAGGCTAGCTAGTAAAGCAGTGCGTGAAAGTGGCTGGTcaaagttttagttttaaaataACTGGTGTGTAGTGCCATTACGGGTCATGTTTTGTGCCACAGCAGTTAAAAAGATAAACATGAACTAACTTTATTTTCAAGCGGGCTTTTCGTGGTTATGACAGCAAGCACAGTCTTTCAAAGATCTGTGTATaacattttatgactttataAAATTCCAGAATATGCACATTTGTACCATTATTAAAgggacacatacagagacaaatactttttcctttcctttaagTCAGTTATGACACCCAAACTGTCACACTACGTACAGGTTGAATGTCGGCATTTAgtgttttgtccttttttgttcCTTATTAATGCTTTATTTCCGGAGATCTAACTCTTAACACCTCCATACATATGCCGATGCTGCAGCTGGTTCAGTACACCTCGTTATATCAGCCACCAATCACACGCCGGCAAATTCTGACTCTGGCTTAAGCGTTtctcctgcagctgcagctctGGCAGGCAGACCTTTTACATAACATGTTTTTCACTCCAGAATCTTAAATTGGAGCGCTCAGTAATGCTGAGTGATGCTAACGGTCTGCTGATGTGGAGCTCGTCCACTGTTTGTTGACGGCATGGCATATTTCATGCAGTACGGCGAAAACTGCTGAGACACAGGTCTCAGTGGTTTTAAAATGGATTCCTCTCCTCCATATCTTTtaatcctcctgttgtcctcgggtcaaatttggccCGTTTTCAAAagatttgggtttctttcaagcaAATTGCAAAAAAATTACACGGATGGTTTCTATAGCGACGAGTATGATTAATGATCAGTTCCCTACTTTCATTTAATTGTAATCAATCTCTAGCACAAAGGGCAAGGTTTCCAGATGGTAACAACTTCTGTTTTAATGTTGAGACATCCTAttttaacaaatacaaatgcgttacattacattacattttaccTTCTCACAAACGAAGGGGATGTTTTCAAAGTTCTCCTACAAAGcaaaaaatattcaatttacacTGATATAAAAAATACCACTTCCTCACAAAATTGAGAAGCTATAGCCAAtaagtgtttgccatttttactggataagtaactttaatttgtatctgattatcaaaataattgtgGAATACATTTGTTCTGTCAATTGACCAGTTAATCGACTAATCGTTTGAGCTCTGATTGTTGCAAGGAAGAGTTGTAGTCATGCTGAGATAAGAGTGTAATTAATGCTTTCAAATGGGTTTGAATTTTTCTAAGGAAAGGAGAAACGGGAGCCATTTTAAAGCCTTTACTTGTTAACTCGAGCCGACTGATGGGCAACAACCTCCTTTATCAGctctgttgtttttattatttaacacacaaacaaaccaaatgtattttttttttagacttgttttttaaagtgttttacaCCGCCAAGCTCGTGAGGCTCCACCAAACTGGGCTGTCCAAGGTTAACAAACAAGCTCACCCTGTCACTCTTTGTAACAGAGCTGCAGCAGATGGAAAGAGAACGGAAACATGCCTGTAGCTTTTAAAGATGTTTATATTCTACAGTAGTTGAGTTGCCCGGGCAATGGGTCAACTATTATCTGAATGTTAAatgtacaataaaataaaaatagggcTGCTGCTACTGCTTGACCTGTAAAACACCATATGGAGTGGGGCATGTCTCAATAATCTAAAGTTGCTCTCTCTCCTGCTAAAACAAGAAAAGCACTTTTACAACATTCATTTGTAACAAATACTATTTCTACATACATTATTCtgaaattgttttatttcctttggAGTCTTATTTTGATAAGCAAAAGTAATGGCGGTCAGGGTAATCTGTTGCCCCAATTTAGTTTGTATCCAAACTCTTAGTCACTcctgtttttagttttgtgtgGCAGTTAAAATCTGTTTATCACGACGACAGAAGTGTGCGTTTTAAGTTGTTCAAGAATATCTCACTTGTTTACTTAGTTTTCAAAACGCCGTAAAGGACTGAAAAGGAAGGGAGCAACTTCAGATGACGCGTCCCAAAACACTTTACACTGGGTTGAGGCTTTGAAGTCAACACTATTTTATTTTCCTGTCTTTGCTacccttaaagctatagtgcgtagtttctgtctcccccatgaggaattttaagtaatgacatcaattctgtcggtgcatccacatgCCACAAGCCTTCTGTGAATGCGCTTCACCCCCagtcctcctccacacagttgctagtagccaaggaggacacggaggataaaaaaaactcttcaaaagaggtaattatcttcactcaagtttctcCGCGCGAAAGTCGCTGAACGACACCATTTTCTAAACCTTgcaatgctgagaaatacagagagagttttgtccagctgatagtcttaattagctttgtatcaattcatttggcttgaatgtaacggacgttcattattatCAAAAaattacgcactaaagctttaaactcAACTAATCTTCATGAAAGGAAGATATTTTGCGTGGTGTTAAATCTGTTTTGGGATCAATCCACTTCGTTTCCATAAATTCTACAATTTTTTGAAAGTCAGACAACCTAGTTTACAGGTTATTTCCATGCCCCAACAGAAACTGTGGACTTATAAGCTACCTTAATGTATTTACCAAGTGATGTGTTCATATGTTAAGCTTTTTAATGAGTTTTCATTTATTCATCATGTaaatcgacaaaaacaagcacaaaAGCACATTATTTGGGGGATAATAGTCCACAGATTCAGTTTGAAGCAGGTTATATCTGTCTTTTAATGAAATGCAGTTTCATGGAAATCATTGGTCCCCAAAACTGTACGTGTCTGTAATCAACAAGACTGGTTGAACATTTTGGCTGAAACAAAGctcttttttcatttaaatattataaatattattattattatgaatgtCTGTTATCTTCTTTTTCTTAGATGTTTCATTGTTTTTGATATATTTCACTAATTTACTAGTCTACCATTCATGTGTAGGCAGCTCTGGAAAGCCTAttcaaagattgttttggtTCAATTTGGGAGTATGTAACGAGAGATGTTGATGTGTACATAAATACAGATATTATTATTGGAATATAAATTGCTTGCTTGAAATAATCAGCAGACCTAGATCAAAAAATGTGGATATTATGtctcaaaatactttttattcTGTTAATAAATCATATGCCTGGTGCTCAAAAATTAACAACCCACCCATCTGGCATCCCAGGCAGCCTAAACCAAACAGCCCCAAAGTAAATTAATTCATATTTAATCTGACTGGTCACACTATAGTACACAGAAAAAACTGACTGATTTCATTAAGATACAGTTACTATGAAGAAAACTAAAAGTTCTCCatacaacaaactgctgtgGAGAGAGAAACTGACCAAAACTGtcctgtgtgtcactgtgttaaAGGAAAAATCCACTTTAAGTACACAAAAATCAACTGTTGGTTGGTTCTTCTTGTCTCTCGGTTGGTTCTTCTTGTCTCTCAGCCTGTTTTATAGTTTGGTGTTTAGTTTACTTTTTCCTGTGAATAACTAGTCAAATGTTGATGACTTGGTGGCACCTTGAGAAATGTTGTTGATAATCACAATGTTGAAGAGCATTAAAAGATGACTATATTGgcttcaccaaaaaaaaaaaatattttcagtttcaAAAAGTATACTTCAGTAGCAAGCTTTAAATGGGTCTTCTTTTTTTAGATCAATTTCCAATACTGCTTCCATTGTAATATCAGAGTTCCAGTACTGATAcccaatctttttttcttttttttttaactaaaactTTTTACTAGAGTCCTGATAAGCTGATAGTCTAACAGCCGATCTTGTTTTATTACAGATGTATTGGTATTGTATGTAAGTCCAAGTAATACACAACTGCAGTACAGAAATGGCAGTGATATGTTTGAGGTTGTTTAGAAAGTTGTTTCAGACCCACggaatttatttttcattcgTAAAATGTTCCAGTCAATACATAATCTTGATCAGAGGCAAGAGAGAGACAAGCAAATATATATTGTCTCTAATATTGATATTAGCCGTAAATATCAAGTATCGGTAAAGCTAAATAACTTACTtagttttttgtatttgtgtacaATAATGAAAGTAACCTAAATGAATTACAGCAAAAGTAAAGTCATCACCTTATCTggtcaaaaaatacaaaaacgaCTATTAATCGGACCAATCATTTGGTATTGAGTTTTCAGTACTTTATGTACTGGATTCAAAAATCGCATTACCTGGATACTCATGCCACATTAAACTGGTCATCAACATTGTGATTATTCACCTAATCAGAGGCTTGAGGACATTGTTTCAAATCAACAAATGatcatttattgattttattcaTGATTTAAAATAGAATGTCATCTGCAGAGAGTGAGAGCTTCTTTCTAGAGCTTACGCTAACATTAACCAAACAAATAACCGGGAGATTCTCATTTGAGAGATTTCATGTATTAGATATGGGAAAGTAAATGAGCTGGGTTGGGGGAAACCGGAAGCTCCAACATTTTCTCACCAAATAACTAATTAAATAAACTGACATCTGCGGGTGGATTTTTCCTTTTAACAGTTTCAGTTCTGTCTTCTGAAATGTTCCTTCAGGGCTTCGGACGTCCACATCTTCCCCTACTTTTCACTCACGAAGAATGTAAATGTTTTGAAACCAGTATGTTGACGGACGGAAAGTGACTCAATGTGTCATTAACACTGATAATGTACATTGTAACTAACTCATGTGCAAAGAGACAGCAGCCTAACGGACAACAAACctaattatttatattattctaAATAAACTAAGGATTAAAACAGTTCCACACCTTCAGAATAGATTCAAACTCCTGGGGCTTCTCAGCTTGCTACGAAGGGATCGGAAGGAAAGAATTGTATCCTTCTCTTGAGTTGTCAAGTGTTTGTGtgggctgctgctgccgctgcacATACTGCTGTCTGAAGTTCATTCTGAATACATGTAGATGCAGTGAAGTTTGGGGATGAGGGCTGGTTCTATTGGTGTCCAAActgtttgaaataaaacacaaactggTTTTTAAGATGGAA

Function

symbol description
usp12 Enables cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in protein deubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821618.1 True 7448 mRNA 0.40 10 22526589 22550975

Neighbor

gene id symbol gene type direction distance location
phka1a phka1 coding downstream 326540 22164235 ~ 22200049 (-)
clcn5b clcn5 coding downstream 487024 22000595 ~ 22039565 (-)
htr2cl1 LOC101072775 coding downstream 843237 21537147 ~ 21683352 (-)
zgc:109889 LOC103480395,LOC103144648,LOC102211070,LOC101469879 coding downstream 992185 21488632 ~ 21534404 (-)
rab39bb rab39b,LOC107091979,LOC106527197 coding downstream 1342132 21167499 ~ 21184457 (-)
LOC120573632 NA coding upstream 19821 22570796 ~ 22573146 (-)
LOC120573633 NA coding upstream 22576 22573551 ~ 22580271 (-)
LOC120573582 NA coding upstream 30345 22581320 ~ 22605991 (-)
dachb dach2,LOC103363055,LOC103389227 coding upstream 325715 22876690 ~ 22978132 (-)
stk26 NA coding upstream 476429 23027404 ~ 23057243 (-)
G145395 NA non-coding downstream 54764 22464549 ~ 22471825 (-)
LOC120572729 NA non-coding downstream 265652 22260461 ~ 22260937 (-)
G145345 NA non-coding downstream 269311 22232334 ~ 22257278 (-)
G145343 NA non-coding downstream 295275 22231072 ~ 22231314 (-)
G145337 NA non-coding downstream 324646 22201581 ~ 22201943 (-)
LOC120573387 NA non-coding upstream 56665 22607640 ~ 22608359 (-)
LOC120573226 NA non-coding upstream 193973 22744948 ~ 22746278 (-)
G145508 NA non-coding upstream 263595 22814570 ~ 22814816 (-)
G145510 NA non-coding upstream 266706 22817681 ~ 22818189 (-)
G145514 NA non-coding upstream 286193 22837168 ~ 22839383 (-)
G145342 NA other downstream 296087 22230059 ~ 22230502 (-)
shroom4 shroom4,LOC107741461,LOC107562256,LOC107691917 other downstream 400108 22045501 ~ 22126481 (-)
ccnb3 ccnb3 other downstream 547163 21881290 ~ 21979426 (-)
si:dkey-172j4.3 LOC102306481,LOC103363024,LOC100708735,LOC101468909,LOC102781820,LOC101073787,LOC108246481,LOC106609052 other downstream 1088133 21351242 ~ 21438456 (-)
G145209 NA other downstream 1092394 21403855 ~ 21434195 (-)
G145509 trpc5,LOC103389248 other upstream 263931 22814906 ~ 22817623 (-)
LOC120572139 NA other upstream 1298695 23849670 ~ 23855268 (-)
LOC120572715 NA other upstream 1504025 24055000 ~ 24075036 (-)
LOC120572219 NA other upstream 1581251 24132226 ~ 24140420 (-)
LOC120573113 NA other upstream 1682666 24233641 ~ 24363065 (-)

Expression


Co-expression Network