LOC120572474


Basic Information

Item Value
gene id LOC120572474
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19512028 ~ 19523990 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821810.1
TTGTGTTTGTGCGGGATGTACGAGTACATCAGAAACAGGGCAGAGGGTCCACTAGGACAAACGGCTGATTGGTGCCTGGGTGTTACACAAAATCAACGCATTTCCCAGAAGCAGAGTAACAGAATGTCGGTGCTGGATGTGAACATGAGACACACTGTGCTCTGTGTGCTGGGGTTATTCTCACTCCTCTACCGTGGACATGCTCAAGATGCTGTGTTGACCATTGAACCAAACTGGTCCACTTTTTTTACCGAAGAGTCTGTTACCTTCATATGTGACATGAGGGAAGGAGAAGACACAGACTGGCAATACTCATTCTTGATGGATGGTCGAGTATTTGTCTCCAACTCAAATAAGAGATATACTTTAGAACCACTAGTTATAGGTTACAGTGGTGAATACCAGTGCTTTGGTGATCACAAAATCTCGCCACCTTTTAGAAAAGAAAGTAATAAATTCTCTCTAACTGTATCAGACAAAGATGTGATCCTGGAAACTCCTGCATCCACTTTGTTTGAAGGAGAATCAGTGACTCTGCGCTGTAGACATCGTACTCAGACAGAGGAGAAGAATGCTGTCTTCTACAAAGACGGATCACCTATTCAAATAGACACAAACCACCAGTCACTGATAATATCAAAAAACACAGTTCAAGTAAAATCAGATGGGAGCTCTTACACGTGTAAATTTGAGGAGGAAGAATCCGAACcaataaaactgaaaatggaACCCCAACCAAAGGCCCAACTGAGCAAAGACGTTTCAGCAGAGGGCAGTGTGACCCTGACCTGCTCTGTGAACccatcatcattattatcatcatcatctggtTGGAAATACTTCTGGTACAGAGGAGAGAAAGCCTCTGAACCCCTGACCTCACAAGATGTTCTTCTCTCAAATGAAACAATCAGGGTCTCAGTAGGAGGAGTCTACTGgtgcagaggaggaagaggagagccTGTTTACTACACAGAGTACAGCGACCCAGTCGaaatCTCTCCATTTCCTGTGTTGTTGGTTGTTGGGCTGGTTGGTGGAGTTTTACTGATTCTTCTCCTGCTGCTGTTTCTGTATCGCTACAGAAAGTCAAACGaTTCATGCTTCAGCAGGTCTCAGAGCACCAATCAGAGCCCTGCTACAGACCACATGACCAACCAGGTGGAAGCTCAATACGCTTCTCTTCTCCATGGTGATGCTTGTCTCTATGAAACAATCAAAGGCCCTGAAGAACCTGGACATGGGAGGAATAAAGAACCAGAGGACAGCCTTTACTCCAATGTGACGATAGGATCAGCTGCAGCTCAATAAAGACATCTGAGGACAAAACCAATGGAATGGGTGACAACTTATAGGACCACATTGTTGTTTAAGCagtatttgcaacttaaataaAAAGTGTGATTATTGTGTGCATCTCTGCTATTAGACATTATTTTGTACAGTTAACCTTATAGCAGATCACTGAAAGGAAATACATCATATGGCTTTAATCTTTTGTTGTAATTGGTGAAAAGCCTATGGAGttttacataaaataattaaatatttatattgagTTTTTATGTCCTGTATTTCTTCTTTGGTAAACTGTCCCTCTGTTTTTTAAAGCTCCTATACTTCGAATGGATGGTGTCTCCAAAAGCAGCAAAAATAATCTGTTTGAAATATTTGGGCTTCATGTGATAGTTCAGCTACAAAGTCAGCATCTCTTTCATTGATGATGAAAAAGCTTTACACATTCATAATATTGGatttcaaaagaaataaatCCTTTTGCACACAG

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko04670 Leukocyte transendothelial migration
ko04380 Osteoclast differentiation
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821810.1 True 1786 mRNA 0.41 12 19512028 19523990

Neighbor

gene id symbol gene type direction distance location
pnp5a pnp,LOC103368940 coding downstream 105670 19403481 ~ 19406358 (-)
sf3b2 sf3b2 coding downstream 142393 19357363 ~ 19369635 (-)
klc2 klc2,LOC102775952 coding downstream 230572 19266453 ~ 19281456 (-)
gal3st3 gal3st3 coding downstream 326237 19155032 ~ 19185791 (-)
si:ch211-168d1.3 rin1,LOC102778665,LOC104958383 coding downstream 377763 19104015 ~ 19134265 (-)
LOC120572473 NA coding upstream 5170 19529160 ~ 19553841 (-)
LOC120572523 NA coding upstream 63140 19587130 ~ 19588077 (-)
LOC120573581 LOC103480354,LOC103144605,LOC104935705,LOC104965865 coding upstream 143709 19667699 ~ 19677622 (-)
arhgef11 arhgef11 coding upstream 155265 19679255 ~ 19702223 (-)
LOC120572266 NA coding upstream 356350 19880340 ~ 19894923 (-)
G144476 NA non-coding downstream 276504 19234321 ~ 19235524 (-)
G144425 NA non-coding downstream 411191 19100428 ~ 19100837 (-)
G144424 NA non-coding downstream 411798 19099980 ~ 19100230 (-)
G144423 NA non-coding downstream 412831 19098894 ~ 19099197 (-)
G144422 NA non-coding downstream 413188 19098582 ~ 19098840 (-)
LOC120572478 NA non-coding upstream 20181 19544171 ~ 19546423 (-)
G144585 NA non-coding upstream 142468 19666458 ~ 19667497 (-)
G144735 NA non-coding upstream 192994 19716984 ~ 19815341 (-)
LOC120573676 NA non-coding upstream 215368 19739358 ~ 19742781 (-)
LOC120573678 NA non-coding upstream 222515 19746505 ~ 19746825 (-)
LOC120572670 NA other downstream 158722 19282933 ~ 19353306 (-)
prkd4 LOC103376196 other downstream 245675 19247950 ~ 19266353 (-)
clcn3 clcn3 other downstream 455246 18962866 ~ 19056782 (-)
G144258 NA other downstream 914797 18595102 ~ 18597231 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other downstream 972405 18536143 ~ 18539623 (-)
si:cabz01074946.1 NA other upstream 133093 19657083 ~ 19665792 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other upstream 252690 19776680 ~ 19797530 (-)
LOC120573300 slc12a6 other upstream 1303293 20827283 ~ 20863889 (-)
nop10 NA other upstream 1340767 20864757 ~ 20867106 (-)
LOC120573168 LOC103355779 other upstream 1382465 20906455 ~ 20929559 (-)

Expression


Co-expression Network