si:dkey-185m8.2 (LOC104955459)


Basic Information

Item Value
gene id si:dkey-185m8.2
gene name LOC104955459
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18878121 ~ 18886053 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821855.1
CCACTTTCTGTGTTCAGTTTTGTGCAACACCAATCTTCGTTTTGGATCAATTGACTACGAagggtgtttgtgttttctttcacaATGATAGTGCAGAAACTCTTCCTGTAAAAGACACACAGGAAccaaaaagaggaagaggaaggacaAGCGGACAGAGATGTGATGGACGTGACAGATGAGAACTGTAGTCCAGTCATCGTCACGAATGGTGATTATCCGGTACGGTGCACTGAGGAAGTACTTCTCCATTTCTTCACAGATGAGAGTCTGCAGGCCGCCATGGACTCACAACACCCTCCCGCCTCCTGCAGCTCCCCCCCGGCTCTCCCAGAGCTTAGACTGGTCCTCCTGGGCAGGAAAGGAGCAGGGAAAAGCGCGGCTGGCAACACCATCCTGGGAGGAGTAGGGGGTTTCGAGAGCGGGAAGCCCACGGAGGAGTGTGTGAAAAGGCGAGCTGATGTGGCAGGGAGGAAAGTCACAGTGGTAGACACCCCAGGGTGGGAGTGGTACTATCCGCTCAACAGCACCCCCAACTGGGTGAGGAGGGAGACTTTACGGAGTGTGACACTTTGCCCTTCTGGACCCCACGCTGTGCTGCTTGTGGTGCGATCCTGCGCCTCAGTAACAGATGACTACATCAGTGAGATACAGGAGCACCTGGAGCCGCTGGGAAAAGCAGTTTGGGAGCACACCATGTTGCTGTTTACCCGGGGAGACGAGCTAGGCCTGGTGTCAATGGAGCAACGAATCCAGACGAGCGGCCCGGCACTCCATAGGCTCCTCCAAAAGTGCGGGAACAGATACCATGTCCTGGATAACCGGAGCAAAGGAGATGGGACGCAGGTTAAAGAGCTGATAAGGAAGCTGGAGGAGATGGTGGAGGGGAAGAAGGATGGAAGCAGTCATTTAGAGATGGATAATACGGTCCTGGTGGGTCTGGAAGCAGACGGGAAGCGGAGAgcaagggagaggaggaagaaacaGAGGCAGATGGAGACGCAGATGCAGAGAGGGACCATCAAAGCTGCTCTAATGAGTGATGGTCTTCAAGGTTCAGAGCTAGACGCCCGCCAGTCGTTCTCCAAGGTTCCCCGACGCCTAACTGAGGTCAGGCTGGTTCTCCTGGGCGAGCGTGAAACAGGAAAGAGCTCTGCCGGGAACACCATCCTGGGCAAAATGGGCTCCTTTCAGGCCGGGGCAGTGACAGAGGAGTGCGTCTGTCAGCAAGCGGAGGTGGCCATGCGGCTGGTGACGGTGGTGGACACTCCCGGCTGGGAGGGAGGTGTGGCGGGGGCCACACCTGAGAGGGTGAAGAGGGAGATTGTCAGCAGCGTGGCCCTGTGTCCTCCAGGGCCCCACGCGCTCCTGCTGAGTCTGAGGGTGGATACACTGGTGAGGGCAGCACATGTGAAGGAACATCTGGAGCTTCTGGGCGAGGGTGTATGGAGACACACAATATTGCTGTTCACCCACGGGGATCAGCTTCGGGAGGGGGTGGATATCGAGCAGCACATCCAGGGTGGGGGCAGAGATCTCCAGTGGCTGCTGGAGAAGTGCAGGGGCAGGTACCACGTCGTCAGCAGCCtagatggaggaggaagaggaagtgaaGGCTCCGTTAAGGTGACGGAGCTCCTGCAGAAGGTAGAAAAGATGGCGGCGGTGAACAGGTGTGAGGCTTTCTCCGGCCTAGTTCAGGAGGTCATAGATCTGAGCCGGCACAGGAACGAGAAGTTCAACCAGCGGCTGAAGGACATGGGAGATAAAATGCTTCGCCAGGAGGAGGAGTTGAAAAATATTAGAGACAGGGAGATGAAAAGAATCAGGTGGTTTTTTGACAGGAAGAAGAAGGGGAAATCACCCGGAAAAGCCGACGTTCaaagggaagaggaggaggaagagaacaGGAGGATGGGAGAAAGGAAGAATGATGGGGAAGTTGAGGGGGAGCTGGAGGAGAGGATGCGATGGCTGACAGAGGATAAAGAAAGAGAAATTCAGGATCTGAGCATAGAAAATGAAAGAATCCAGGTGGCGCTAACCCAGAGCAGACGAGAAAGGGACGAGGCGATGCTCAGGCtggagctaaaagagagagagacggaggagctGAAGGAAAGAATTGACGAGCAGCAGCTGAAGCTGCTGGACCTTGAGCGTGCCGGTGTAGCAAATGAACATGAGAGAAAACAGAGGGAGGATACCATCAAAGCAAAGAAGCAAGAGTGGTTGAGTGAGGTTAAGAAATTGGAAGACAACATAGAGCtgcagaagaaagagaaagcagAGTGGATGGAAAAAGTTGATTCTTTAAAAGCAGAAATGGACGAGACTAAAAGACATATTGATGATATGCTCGAGAGAAAAGAACAAGAAAGAAACAAGGAGATGGCAGAGATGgaagaaaaacttaaaaaagagATGGAAGTCAAACTGCTTGAAAAAGACAAAGAACTGGAAAAAACTAGGAAGAAAGCCTCAGAGGAAAAGCAGAAAACTCACGCTATCATAAAACAATGTGAAGAAGCTACGGAAAGGAAAGTTGAAGAAATGAAATCACAACATAGGAAAGAGATGCATGAGAAAGAGGCAGAGATACAAGGCATACAACTGCAGCATCAGGAAGAGATGGCCAGAAAAATcagagaaatagaaaaaatgATGGAGACAATGAAAGTTCAACACCAAAAAGAAATTGATCAAAAGTTTAAAGACAATGCAGAAAATATGGAAAGAGTCAAATGGCAGCATGACAatgaaataaaggaaacgcggcaagaaaaacaaagaaagattGCAGAGCTGAAAGAGCAGTTTGCAAAAGAAACAGAGGAacaaatgcaagtaaaaaagagagagatagcgGAGTTAGTGCAGAGGTTTCTCGcccaaacagaagaaaaaatgctggaaaatgaaaaagagaaggaaatgATTCGTCTGACCTACAAAAAAGACATGGCACAGAAGTtgcaagagaaagaaaaagaggatgaAGTGTTAAAATTGCAGCATCAGGAAGAAATGGCaagaaaaatgaatgaaatggaaaaactaatggagaggaggagagcgGAAGACAAGGAGGAAAtagacagaaaagtgaaagcgaAAGAAGAAGCTGTGGAAAGGGTCCAACAGCAGTACAGTGGTAAAATAAGGGACTTGGAGCACGAAACACAACGGCAGATTAAAGAGCTGAAACAACAGTTTGCAGAAGAAATTGAGAAACAATTGCaggaaagacaaagacagataaGACAGTTGGAGCAAAAGCACACCGCCCAAACAGAGGAAAAGGTGctagaaaatgaaaaagtgatGAATGAAAACCacgaaaaatacattttgcaacAAATGCAAGAGAGAGACCGACTAATCGAGGAGTTAAAACATCAGCACATTAATGAAATCAAAGAGACAATGcaagaaagtgaaaaagaaaaggaaagactTGTTATGAATCTCAAGAAAGAGATGGAGCAAAGACtgcaggaaaaggaaaaagagatagaTGAGATCAAAGtaaatgtgaaagaaatgaaGAAACAGCTGCAAcaaaaggaagagaaagaacTAGATAATTTAAATTACAAGCAAGAAATGGAGCAAAgactgagagaaaaagaaaaagaaattggagagtTTGAGTTTTTATCTGCAAGTCAGGGTCACAGAGGCTCAAACAACAAAGACCTTACTGGGTCGGGTTTGAGGGTGGTGGTGTTAGGGGAGTcctggtcgtctcgctcccccgcTGGAGTCACCATCCTGTGTGGACAGGCACCCAAACACGATGGATCTACCTTCATGCCCTGGAGAGGTCAAGTAGCCGGACGGCGACTTACAGTCGCAGAACCGCTCGGTCTGAAGTGGCGAGATGGGCCGGATCGGACCAACACAACGCAAAGGAAAAGCATTCTCGACGGCATCTCCTGGTGTCACCCTGGACCTCACGTCGTCCTCCTGCTCATTCCCGCCTTCTTAACCTGCACACAGAAGTACAGGAGAGCAATAGAGGAGGACATGAGTTTGTTTGGGGAAGACATTTGGCAGCGCACGCTGGTGGTGTTCACATGGGGGGAAATGTTAGGGGAGAGCGCAGAGCAGCACATCCTGAGGAACGGGGAGCTAATGGGGCTCGTAGAGAGATGTGGGGGCAGGTATCATGTGCTTGGCAGCAAAAAAAGTCACTCTTTGATTGAGAGATTGTTTGAGAAGATGGAGGATATGGTGACTTTGAATAGCAGAGAACTGTGACGAGACTATGAATTTATCATGTAAAAATTGTGTCTTTCATCTTACgtgaatatttttgaataaatttagaaagtggtg

Function

NR:

description
trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821855.1 True 4341 mRNA 0.48 4 18878121 18886053

Neighbor

gene id symbol gene type direction distance location
ankrd53 NA coding downstream 32601 18842076 ~ 18845520 (-)
trnag-gcc_1 NA coding downstream 140969 18737082 ~ 18737152 (-)
trnak-cuu_5 NA coding downstream 178264 18699785 ~ 18699857 (-)
trnak-cuu_4 NA coding downstream 178624 18699425 ~ 18699497 (-)
trnan-guu_14 NA coding downstream 179190 18698858 ~ 18698931 (-)
LOC120573249 NA coding upstream 16913 18902966 ~ 18912675 (-)
trmt10b trmt10b coding upstream 52065 18938118 ~ 18945452 (-)
trnad-guc_5 NA coding upstream 79313 18965366 ~ 18965437 (-)
trnad-guc_6 NA coding upstream 80889 18966942 ~ 18967013 (-)
trnad-guc_7 NA coding upstream 85339 18971392 ~ 18971463 (-)
G144303 LOC103360597 non-coding downstream 47806 18828464 ~ 18830315 (-)
G144275 NA non-coding downstream 177566 18700209 ~ 18700555 (-)
LOC120573605 NA non-coding downstream 628064 18248443 ~ 18250057 (-)
G144037 NA non-coding downstream 858815 18016249 ~ 18019306 (-)
LOC120572704 NA non-coding downstream 875650 17992145 ~ 18002471 (-)
G144346 NA non-coding upstream 49922 18935975 ~ 18936227 (-)
LOC120572676 NA non-coding upstream 107416 18993469 ~ 19002231 (-)
G144422 NA non-coding upstream 212529 19098582 ~ 19098840 (-)
G144423 NA non-coding upstream 212841 19098894 ~ 19099197 (-)
G144424 NA non-coding upstream 213927 19099980 ~ 19100230 (-)
G144258 NA other downstream 280890 18595102 ~ 18597231 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other downstream 338498 18536143 ~ 18539623 (-)
mrpl52 mrpl52,LOC102784052 other downstream 705094 18169214 ~ 18173027 (-)
G144058 NA other downstream 754431 18113852 ~ 18123690 (-)
LOC120573700 LOC100692994,LOC102197104,LOC102799729,LOC101170466 other downstream 797317 17973899 ~ 18080804 (-)
clcn3 clcn3 other upstream 76813 18962866 ~ 19056782 (-)
prkd4 LOC103376196 other upstream 361897 19247950 ~ 19266353 (-)
LOC120572670 NA other upstream 396880 19282933 ~ 19353306 (-)
si:cabz01074946.1 NA other upstream 771030 19657083 ~ 19665792 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other upstream 890627 19776680 ~ 19797530 (-)

Expression


Co-expression Network