sf3b2 (sf3b2)


Basic Information

Item Value
gene id sf3b2
gene name sf3b2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19357363 ~ 19369635 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822119.1
ATGGCGTCCGACGGACCACCGGGCACCGAATCTCTCCCGTCCGATTTAGGCAGTGCGATTGCGGCATTGAACACATGGAGCCATCCGGAGCTTCAGTCCAAGCTGGCGGAGCTGGGAGCGCCCACGATGGGTCCCAGAGAGGAGCTAATGGACCGACTGAAGGGCTACATGATTCAGACTGGGATACTCCTCAGCAAACCTAATGATGACAAACCAATGGGCTCCCAGATGCCAGGCATCCCCCCCATGCCCCCAATGCCCATGCCACCCATGCCTCCTGGTATAGGCATGCTCCAGGCTATGAGCATGATGCCCGGAGGGCCCCCTCCACCCGGCATCCACATGGGCATGGAGCCCCCAGGTTTGCCTCCTCCCGGCCTATCGCAGGAGGATCAGCTGAAGATGGCCCAGCACAGAGCAGCCATAGTGTTACAGCAGGAGGAGAGAGCCAAGCAGCAGGGTGATTCCCGTGTCATGGATGAACAGGATCTCCTGGAGCAGCAGAAAAGGGCTGCAGTGCTGCTGGAACAGGAGCGTCATCAAGAGATGGTTAAGATGCAGCAGGGTCCAGGGCCCAGAGGCATGCCTCCTGTCAACGCAGTGAGAGGTATGGATCCTCGTGGGCCGCTGCCTCCTGGTGTCAGTATGATGCCGACTCAGAAACAGAGAGTGCCACCTCCACCAGGAGAAGATAATAGAGAGATGTGGCAGGGCGAGGAGGTAAGCGTCAGTGGGCCCAAGATCCCTCAAGCTCTGGAGAAGATCCTCCAGCTGAAGGAGATCAGACAGGAGCAGCTCACCGACCCCGCAGaagaagaagatgacgAGGGAGCAGAGATGGACCTGAACAGCTCCTCTGCACCAGTCATGTCTGAGACCGAAGACGACGACAGTCAGATATCTAAAAAAGATAAAAACCGCAGACGCAGAAACCGCAAGAAGAAGAGCAAGAAGAAGCGCGCACTGGAGAAGAAGGAGCAGGCGGAGGAGCAGCAGAAGAAGGAGAGCAGAGACAAGGACaaggacaaagagaaagagaaagacaaggACAAAGAGAAggacaaagaaaaagagaaggacaAGGAGCCTGAGGTGGAGATCGAGTATATCACAGAGGAGCCGGAGATCTACGACCCCAACTACATCTTCTTCAAGAGGATCTTTGAGGCGTTTAAGCTGACTGATGATgtgaagaaagagaaggagaaggagccCGAGAAGGCAGAGAAGCAGGAGGCGGCCGTGCTGCGGAAAAAGGGCTTTGAGGATGAGAAGAAAGACAGCGATGACAGCGATGAGGACATGAGACCAGATGTCCCCAAACTCTCAAAGAAGAAGCTGAGGAGGATGAACAGGCTCACTGTGGCCGAACTTAAACAGCTGGTTGCTCGTCCAGATGTAGTGGAGATGCATGATGTGACGGCCCAGGAGCCCAAGCTGCTGGTCCACCTAAAGGCCACCAGGAACACGGTGCCGGTGCCCCGCCACTGGTGCTTCAAACGAAAGTATCTGCAGGGCAAGAGAGGTATAGAGAAGCCTCCGTTTGAGCTGCCGGAGTTCATCAAGAAGACGGGTATCCAGGAGATGAGGGAGGCCCTGCAGGAGAAGGAGGACGCCAAAACCATGAAAACCAAAATGAGGGAGAAGGTTCGTCCCAAGATGGGGAAGATCGACATTGACTACCAGAAGCTCCACGACGCCTTCTTCAAATGGCAGATCAAACCCAAACTCACTATCCACGGAGACCTTTACTACGAGggaAAAGAGTTTGAAACTCGTCTGAAAGAGAAGAAGCCGGGGGACCTGTCTGACGAGCTGCGTATCGCTCTGGGCATGCCTGTCGGACCTAACGCCCACAAGGTGCCCCCTCCCTGGTTGATAGCCATGCAGAGGTACGGCCCCCCTCCCTCCTACCCCAATCTCAAGATCCCCGGACTCAACTCCCCGATCCCAGAGAACTGTACGTTTGGTTATCACGCCGGAGGCTGGGGGAAGCCGCCAGTAGACGAAATGGGCAAACCGCTTTACGGTGATGTGTTTGGAACAAATGCTGCAGACTTCCAGGCCAAAGcggaggaggaagaggtggaTCACGCACCGTGGGGAGAACTGGAGCCTTCAGATGAGGAGTcgtcagaggaagaggaggaggaggagagcgacGAGGAGAAACCAGACGAAACTGGATTCTTCACACCAGCAGACAGtgggCTGATCACCCCTGGAGGCTTCTCATCGGTACCCGCCGGCATGGAGACCCCCGAGCTGATTGAGCTGAGGAAGAAGAAAATCGAGGAGGCCATGGATGGAAACGAGACGCCACAGCTATTCACAGTGCTCCCAGAGAGACGAACTGGCCCCATAGGAGCAGCCATGATGGCCTCGACACACATCTACGACGTGTCAGGGGCTATGGCAGGCCGTAAGGCAGGCGGAGGGCAGGAGTCCCAGGGCGTAGAGGTGGCCCTGGCTCCAGAGGAGCTGGAGCTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTCAGAGAACAGCAGGCCCAGGTGGAGAAAGAGGACTTCAGCGACATGGTGGCTGAGCATGCTGCCAAACAGAAGCAAAAAAAGAGGAAGGCCCAGCCGCAGGACACACGAGGCGGTGCCAAGAAATACAAAGAGTTCAAGTTCTAGAGCACAAACCCCACGACGGAGCGCTGCGAGAGAACGAGCTGCCACAACAGGAAATAAAAGAGGAAGAGCTGTACTCAGATTTTAACTTTGGAGGATACAGACTGCAACATCAATCATCTGTTACACCAGTAACCGTAAACAcagttttgttccttttttttttttaaactataaataGATGATCGTTTCGTGACATAATCCCATGTCACATGAAAATGGTGAcctgttttctccatttgacCCTACGTTTTACGTCTTGGTTATTTTGTCTTTGTAACCAtggttttttctgttttttgtaaataaatgaatgatgacaagagttcacaACTGCA
>XM_039822121.1
GGAGGGTTTCCCGTGCTGCTTTGCAGCAGTCCCGTTCTGCGCAGCTCGCGTGTTCTCTCCGCAACAGCCGCCGTTGTTTCATTGAGAGAATCTGAACATGGCGTCCGACGGACCACCGGGCACCGAATCTCTCCCGTCCGATTTAGGCAGTGCGATTGCGGCATTGAACACATGGAGCCATCCGGAGCTTCAGTCCAAGCTGGCGGAGCTGGGAGCGCCCACGATGGGTCCCAGAGAGGAGCTAATGGACCGACTGAAGGGCTACATGATTCAGACTGGGATACTCCTCAGCAAACCTAATGATGACAAACCAATGGGCTCCCAGATGCCAGGCATCCCCCCCATGCCCCCAATGCCCATGCCACCCATGCCTCCTGGTATAGGCATGCTCCAGGCTATGAGCATGATGCCCGGAGGGCCCCCTCCACCCGGCATCCACATGGGCATGGAGCCCCCAGGTTTGCCTCCTCCCGGCCTATCGCAGGAGGATCAGCTGAAGATGGCCCAGCACAGAGCAGCCATAGTGTTACAGCAGGAGGAGAGAGCCAAGCAGCAGGCTGCAGTGCTGCTGGAACAGGAGCGTCATCAAGAGATGGTTAAGATGCAGCAGGGTCCAGGGCCCAGAGGCATGCCTCCTGTCAACGCAGTGAGAGGTATGGATCCTCGTGGGCCGCTGCCTCCTGGTGTCAGTATGATGCCGACTCAGAAACAGAGAGTGCCACCTCCACCAGGAGAAGATAATAGAGAGATGTGGCAGGGCGAGGAGGTAAGCGTCAGTGGGCCCAAGATCCCTCAAGCTCTGGAGAAGATCCTCCAGCTGAAGGAGATCAGACAGGAGCAGCTCACCGACCCCGCAGaagaagaagatgacgAGGGAGCAGAGATGGACCTGAACAGCTCCTCTGCACCAGTCATGTCTGAGACCGAAGACGACGACAGTCAGATATCTAAAAAAGATAAAAACCGCAGACGCAGAAACCGCAAGAAGAAGAGCAAGAAGAAGCGCGCACTGGAGAAGAAGGAGCAGGCGGAGGAGCAGCAGAAGAAGGAGAGCAGAGACAAGGACaaggacaaagagaaagagaaagacaaggACAAAGAGAAggacaaagaaaaagagaaggacaAGGAGCCTGAGGTGGAGATCGAGTATATCACAGAGGAGCCGGAGATCTACGACCCCAACTACATCTTCTTCAAGAGGATCTTTGAGGCGTTTAAGCTGACTGATGATgtgaagaaagagaaggagaaggagccCGAGAAGGCAGAGAAGCAGGAGGCGGCCGTGCTGCGGAAAAAGGGCTTTGAGGATGAGAAGAAAGACAGCGATGACAGCGATGAGGACATGAGACCAGATGTCCCCAAACTCTCAAAGAAGAAGCTGAGGAGGATGAACAGGCTCACTGTGGCCGAACTTAAACAGCTGGTTGCTCGTCCAGATGTAGTGGAGATGCATGATGTGACGGCCCAGGAGCCCAAGCTGCTGGTCCACCTAAAGGCCACCAGGAACACGGTGCCGGTGCCCCGCCACTGGTGCTTCAAACGAAAGTATCTGCAGGGCAAGAGAGGTATAGAGAAGCCTCCGTTTGAGCTGCCGGAGTTCATCAAGAAGACGGGTATCCAGGAGATGAGGGAGGCCCTGCAGGAGAAGGAGGACGCCAAAACCATGAAAACCAAAATGAGGGAGAAGGTTCGTCCCAAGATGGGGAAGATCGACATTGACTACCAGAAGCTCCACGACGCCTTCTTCAAATGGCAGATCAAACCCAAACTCACTATCCACGGAGACCTTTACTACGAGggaAAAGAGTTTGAAACTCGTCTGAAAGAGAAGAAGCCGGGGGACCTGTCTGACGAGCTGCGTATCGCTCTGGGCATGCCTGTCGGACCTAACGCCCACAAGGTGCCCCCTCCCTGGTTGATAGCCATGCAGAGGTACGGCCCCCCTCCCTCCTACCCCAATCTCAAGATCCCCGGACTCAACTCCCCGATCCCAGAGAACTGTACGTTTGGTTATCACGCCGGAGGCTGGGGGAAGCCGCCAGTAGACGAAATGGGCAAACCGCTTTACGGTGATGTGTTTGGAACAAATGCTGCAGACTTCCAGGCCAAAGcggaggaggaagaggtggaTCACGCACCGTGGGGAGAACTGGAGCCTTCAGATGAGGAGTcgtcagaggaagaggaggaggaggagagcgacGAGGAGAAACCAGACGAAACTGGATTCTTCACACCAGCAGACAGtgggCTGATCACCCCTGGAGGCTTCTCATCGGTACCCGCCGGCATGGAGACCCCCGAGCTGATTGAGCTGAGGAAGAAGAAAATCGAGGAGGCCATGGATGGAAACGAGACGCCACAGCTATTCACAGTGCTCCCAGAGAGACGAACTGGCCCCATAGGAGCAGCCATGATGGCCTCGACACACATCTACGACGTGTCAGGGGCTATGGCAGGCCGTAAGGCAGGCGGAGGGCAGGAGTCCCAGGGCGTAGAGGTGGCCCTGGCTCCAGAGGAGCTGGAGCTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTCAGAGAACAGCAGGCCCAGGTGGAGAAAGAGGACTTCAGCGACATGGTGGCTGAGCATGCTGCCAAACAGAAGCAAAAAAAGAGGAAGGCCCAGCCGCAGGACACACGAGGCGGTGCCAAGAAATACAAAGAGTTCAAGTTCTAG

Function

symbol description
sf3b2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Is expressed in several structures, including mesenchyme; mesoderm; neural plate; neural rod; and tail bud. Orthologous to human SF3B2 (splicing factor 3b subunit 2).

NR:

description
PREDICTED: splicing factor 3B subunit 2 isoform X2

GO: NA

KEGG:

id description
K12829 SF3B2, SAP145, CUS1; splicing factor 3B subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822119.1 True 3008 mRNA 0.54 22 19357363 19369538
XM_039822121.1 False 2719 mRNA 0.56 21 19357698 19369635

Neighbor

gene id symbol gene type direction distance location
klc2 klc2,LOC102775952 coding downstream 75907 19266453 ~ 19281456 (-)
gal3st3 gal3st3 coding downstream 171572 19155032 ~ 19185791 (-)
si:ch211-168d1.3 rin1,LOC102778665,LOC104958383 coding downstream 223098 19104015 ~ 19134265 (-)
trnas-gcu_6 NA coding downstream 292122 19065160 ~ 19065241 (-)
nit1 nit1 coding downstream 299689 19054776 ~ 19057674 (-)
pnp5a pnp,LOC103368940 coding upstream 33846 19403481 ~ 19406358 (-)
LOC120572474 NA coding upstream 142393 19512028 ~ 19523990 (-)
LOC120572473 NA coding upstream 159525 19529160 ~ 19553841 (-)
LOC120572523 NA coding upstream 217495 19587130 ~ 19588077 (-)
LOC120573581 LOC103480354,LOC103144605,LOC104935705,LOC104965865 coding upstream 298064 19667699 ~ 19677622 (-)
G144476 NA non-coding downstream 121839 19234321 ~ 19235524 (-)
G144425 NA non-coding downstream 256526 19100428 ~ 19100837 (-)
G144424 NA non-coding downstream 257133 19099980 ~ 19100230 (-)
G144423 NA non-coding downstream 258166 19098894 ~ 19099197 (-)
G144422 NA non-coding downstream 258523 19098582 ~ 19098840 (-)
LOC120572478 NA non-coding upstream 174536 19544171 ~ 19546423 (-)
G144585 NA non-coding upstream 296823 19666458 ~ 19667497 (-)
G144735 NA non-coding upstream 347349 19716984 ~ 19815341 (-)
LOC120573676 NA non-coding upstream 369723 19739358 ~ 19742781 (-)
LOC120573678 NA non-coding upstream 376870 19746505 ~ 19746825 (-)
LOC120572670 NA other downstream 4057 19282933 ~ 19353306 (-)
prkd4 LOC103376196 other downstream 91010 19247950 ~ 19266353 (-)
clcn3 clcn3 other downstream 300581 18962866 ~ 19056782 (-)
G144258 NA other downstream 760132 18595102 ~ 18597231 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other downstream 817740 18536143 ~ 18539623 (-)
si:cabz01074946.1 NA other upstream 287448 19657083 ~ 19665792 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other upstream 407045 19776680 ~ 19797530 (-)
LOC120573300 slc12a6 other upstream 1457648 20827283 ~ 20863889 (-)
nop10 NA other upstream 1495122 20864757 ~ 20867106 (-)
LOC120573168 LOC103355779 other upstream 1536820 20906455 ~ 20929559 (-)

Expression


Co-expression Network