XLOC_004834 (si:dkey-49c17.4)


Basic Information

Item Value
gene id XLOC_004834
gene name si:dkey-49c17.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31773435 ~ 31779178 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009548
GATTGAAAAATCTCAAATCTTTGTCCCTTTTTTATGGATGACTGCGCGCTGGAACAATGACCTAATCCTTTGGGATCCTAAGGACTTTTGTGGCATTACAAATGTGGTTTTACCAAAAGAGATGCTTTGGGTACCAGACCTCTTCATTTTAGAGGCCATAGAGAAGGAAGAAGGACTACCGAACCCGTATTTGACTATTACTTATGATGGGAATGTGACAATGGAGGATGACCATAAAATCATCAGCACATGTGCATTGAATGTGCATAAATTTCCTTTTGATACTCAAACCTGCCACATCACAGTGTTTTCAGTGAATCACTCCGATAAAGAAATTAAGCTGGTTCCTGCCTCCAATTCAACTAAAGCAACACAAATGGCTCGAGACCTATTATTAACACAAGGAGAATGGGAGCTCCTCAACATATCCGTGTCCAACCAAAACATGCTTTATGAGGGCCAGTCATTTCAAACATTAAAGTACACGATTTCAATCAGACGGATGCCTCTCATGCACTTCATCAATTTCCAGCTGCCCGTATTGATTTTCCTCATTTTGGACCTGGCTTCATTTTTCATACCAGATAGACCGGAAAAGCTGTCCTTCAAAGTGACCGTGCTGTTAGCGATGTCTGTACTTTTGCTCGTTCTTAATGACATCCTGCCCTCCAAATCCCACTAA

Function

symbol description
si:dkey-49c17.4 Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009548 True 682 mRNA 0.41 5 31773435 31779178

Neighbor

gene id symbol gene type direction distance location
XLOC_004833 RNF157 coding upstream 7613 31729075 ~ 31765822 (+)
XLOC_004832 habp2 coding upstream 53369 31713239 ~ 31720066 (+)
XLOC_004831 dnmbp coding upstream 62845 31638045 ~ 31710590 (+)
XLOC_004830 NA coding upstream 142138 31608889 ~ 31631297 (+)
XLOC_004829 NA coding upstream 169920 31583376 ~ 31603515 (+)
XLOC_004836 CR450698.1 coding downstream 15853 31795031 ~ 31818605 (+)
XLOC_004837 dre-mir-2196 coding downstream 137765 31916943 ~ 31917052 (+)
XLOC_004838 CR385040.2 coding downstream 240943 32020121 ~ 32069756 (+)
XLOC_004839 stxbp4 coding downstream 294482 32073660 ~ 32145981 (+)
XLOC_004840 hlfb coding downstream 380094 32159272 ~ 32165227 (+)
XLOC_004828 NA non-coding upstream 204909 31568188 ~ 31568526 (+)
XLOC_004823 NA non-coding upstream 497096 31275759 ~ 31276339 (+)
XLOC_004822 CR456684.3 non-coding upstream 564884 31208436 ~ 31208551 (+)
XLOC_004841 NA non-coding downstream 391290 32170468 ~ 32186567 (+)
XLOC_004845 CT573006.2 non-coding downstream 622906 32402084 ~ 32416844 (+)
XLOC_004846 NA non-coding downstream 652436 32431614 ~ 32526346 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_07483274_07486490 NA coding CI01000063 null 7483102 ~ 7487618 (-)