XLOC_004835 (lrrc59)


Basic Information

Item Value
gene id XLOC_004835
gene name lrrc59
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31775182 ~ 31812186 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009549
AATCAAAGTAGTATAAGTATGTTTTCATTGCAGTattttaaaagGCTAAGTATGTCAAAAGAGAACATGAAACTTACAATGTCAATTTCTGTGCAGGCCGCCTTTCCGAAGCatagTTTTGGTAACTTTGtttttatgttgtcatTAATATATTCATCACcccacgattcaaaaaaagaaacatttgaaCCACTTGGGATC
>TCONS_00009550
GTGACACGCTGTCAGCTGCGTCTCTGAGCACACGCGCAAGCAATGACGTGGATTTTCATCCATTGCGATGCGAAATCTGTGAACTCACTGTATTCAGTTACACGTACAGCTCTGCAGTGGGTCTCAACTGTTTCATACCATCTGTAACAAGTGAGGAACAGCTTATCAACATGAATAAAGGCAAAATTGAAAACATTAAAGACAAAATTGATGGCAACGAGCTGGATTTGAGTCTCAGCAATTTAACAGAAGTGCCAGTCAAGGAGTTgGCCGCCTTTCCGAAGGCAACCTTTTTGGATCTGTCctgtaataatttaattacattgaCTCCTGAATTCTGTAGCTTGACTCACCTTATCAAAATTGACCTGAACAAGAACCAGCTCGTCTGCTTACCAGAAGAAATCGGACAACTTGTTAATCTCCAGCATCTTGATTTGTACAACAACAAACTAAAAATGCTTCCTATCGGCTTCTCACAGCTCAAGAGTCTGAAATGGCTGGATCTGAAGGATAACCCCTTGGAGCCAACACTGGCCAAGGCAGCAGGCGATTGCTTGGATGAGAAGCAGTGCAGACAGTGTGCATCCAGGGTTCTCCAGCACATGAAGGTACTGCAGGAAGAAGCAGAAAAGGAACTAGAACGTCGATTACTGAAAGAGAGAGaacaagaaaagaaaaaagaagccaAGCAGAGAGAAAAGGAGGCCAGAGAAAAGGAagcacagaagaagaaaaaagcagaagaaaaagAGAGGAAGAGAAAGGAGTATCAAGCCCAGGTCGCTGCAGTTGCTGCTCAAGAACaacagaaaaagaagaaagaagagaagaaaaagaaagCGGCACAAAATCAAGGTAAAAAGGCAGCTCCAGAATCTGTGCCCAAAGCCAAGCGCTCCATCTGCTCCCTGTTCTTCTCTCTTCTCCTCAAACTCGTCCTCCTGGTTGTCATTGGAGTATCAAGCGTTGTAGCAGTTTGTCAGTTAACAGAACTGAGGAAGGAAGCGTTCTGTATCCCGCTCAACGTTCACTTTGAGGAGACGGTGAGGTGGGCTCAGGGTTTGGATGTTGTGCAGCAAGTCATTCAGAAAATGTCTGATCTCAGAACATAAGACTGTCTAAAAAAATTATCCATCCTGCCACCGTTCTGAGCCTCTCAGGTGACGCTTTGGGACCAAGTCACAGACCTGTATGCAGAAATTCCTATGGAATTGTGTTTTCCGTTGCTGcatcttttttaaatatgataatgATCCATTTGATAACTATGGACCAGTCTGTGAAAAGTCCTGCTTGCGTGTCTAAAACAGAAAAGGAAAATGGACTTTAAGGAACAGTTGATAATGTTTGCAACCTTTGGAGTCTTATGTAATGCTGTTTCACAACATCTTATAATAAAACAGTTGAtcgat
>TCONS_00009551
TTGCGATGCGAAATCTGTGAACTCACTGTATTCAGTTACACGTACAGCTCTGCAGTGGGTCTCAACTGTTTCATACCATCTGTAACAAGTGAGGAACAGCTTATCAACATGAATAAAGGCAAAATTGAAAACATTAAAGACAAAATTGATGGCAACGAGCTGGATTTGAGTCTCAGCAATTTAACAGAAGTGCCAGTCAAGGAGTTgGCCGCCTTTCCGAAGGCAACCTTTTTGGATCTGTCctgtaataatttaattacattgaCTCCTGAATTCTGTAGCTTGACTCACCTTATCAAAATTGACCTGAACAAGAACCAGCTCGTCTGCTTACCAGAAGAAATCGGACAACTTGTTAATCTCCAGCATCTTGATTTGTACAACAACAAACTAAAAATGCTTCCTATCGGCTTCTCACAGCTCAAGAGTCTGAAATGGCTGGATCTGAAGGATAACCCCTTGGAGCCAACACTGGCCAAGGCAGCAGGCGATTGCTTGGATGAGAAGCAGTGCAGACAGTGTGCATCCAGGGTGAATGCTGTTACAGTACAGTTAAACTAAGCTAGTTTACTATGAAATCAAAGTTATGCAACAGTCACAAATGAACAAGTTTTTTGTCTATGTTCAGGTTCTCCAGCACATGAAGGTACTGCAGGAAGAAGCAGAAAAGGAACTAGAACGTCGATTACTGAAAGAGAGAGaacaagaaaagaaaaaagaagccaAGCAGAGAGAAAAGGAGGCCAGAGAAAAGGAagcacagaagaagaaaaaagcagaagaaaaagAGAGGAAGAGAA
>TCONS_00009552
TGCGATGCGAAATCTGTGAACTCACTGTATTCAGTTACACGTACAGCTCTGCAGTGGGTCTCAACTGTTTCATACCATCTGTAACAAGTGAGGAACAGCTTATCAACATGAATAAAGGCAAAATTGAAAACATTAAAGACAAAATTGATGGCAACGAGCTGGATTTGAGTCTCAGCAATTTAACAGAAGTGCCAGTCAAGGAGTTggtgagtgtttgtttgtgtgtgtgtccacagtTTTTGTTCACTTTATCGTTAtcaggattgttttttttattttgcttacacATGTTTAAAGAAAGTTCTTAGTTTTCTCAATGAGGCAAGACTCGCAGTTATCACCATAATGGTCCAGTTGACTGATTACATTAGGAATAGCAAAAAACTGATGTATTACAAATTTGATAACATGTTATATTCAAATATGTGAAcatttgatgagtttttttattacttattattttgaTACACATTGGAGTCTGTTGAATTTTTACTCAGAGAACTTGTGAAtctgattgaggtaaagttggttttatattcacacattcggacgttctccttaataatataatttcagaaaagtatactttgcaaattctaaataatgaaatcatatgagcagccaatgactatcagagTACAACAATGTTCACAGTCATATAAATTGtactgatgttgttttgaagtcatacttgcatgtttttttcagactgaatatttaaagtaccatggGAAACAATATTGGGATCATGTCACAAGTTATCACtgaacaaatttatatatatataatttttttttaacagaataaaatgtgtatatgtatatacgcGGGCATA

Function

symbol description
lrrc59 Predicted to be involved in positive regulation of Ras protein signal transduction and signal transduction. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be integral component of membrane. Is expressed in several structures, including axis; hatching gland; notochord; otic vesicle; and polster. Orthologous to human LRRC59 (leucine rich repeat containing 59).

GO:

id name namespace
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2547 Predicted to be involved in positive regulation of Ras protein signal transduction and signal transduction. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be integral component of membrane. Is expressed in several structures, including axis; hatching gland; notochord; otic vesicle; and polster. Orthologous to human LRRC59 (leucine rich repeat containing 59).

Ensembl:

ensembl_id ENSDARG00000071426

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009549 False 201 mRNA 0.33 9 31775182 31812186
TCONS_00009550 False 1415 mRNA 0.43 8 31783066 31787861
TCONS_00009551 False 800 lncRNA 0.41 6 31783128 31786395
TCONS_00009552 True 835 lncRNA 0.32 2 31783129 31784148

Neighbor

gene id symbol gene type direction distance location
XLOC_004833 RNF157 coding upstream 9360 31729075 ~ 31765822 (+)
XLOC_004832 habp2 coding upstream 55116 31713239 ~ 31720066 (+)
XLOC_004831 dnmbp coding upstream 64592 31638045 ~ 31710590 (+)
XLOC_004830 NA coding upstream 143885 31608889 ~ 31631297 (+)
XLOC_004829 NA coding upstream 171667 31583376 ~ 31603515 (+)
XLOC_004837 dre-mir-2196 coding downstream 104757 31916943 ~ 31917052 (+)
XLOC_004838 CR385040.2 coding downstream 207935 32020121 ~ 32069756 (+)
XLOC_004839 stxbp4 coding downstream 261474 32073660 ~ 32145981 (+)
XLOC_004840 hlfb coding downstream 347086 32159272 ~ 32165227 (+)
XLOC_004841 NA coding downstream 358282 32170468 ~ 32186567 (+)
XLOC_004828 NA non-coding upstream 206656 31568188 ~ 31568526 (+)
XLOC_004823 NA non-coding upstream 498843 31275759 ~ 31276339 (+)
XLOC_004822 CR456684.3 non-coding upstream 566631 31208436 ~ 31208551 (+)
XLOC_004845 CT573006.2 non-coding downstream 589898 32402084 ~ 32416844 (+)
XLOC_004846 NA non-coding downstream 619428 32431614 ~ 32526346 (+)
XLOC_004848 BX936416.1 non-coding downstream 1139596 32951782 ~ 32951896 (+)

Expression


Co-expression Network