LOC120573208 (ptgr1)


Basic Information

Item Value
gene id LOC120573208
gene name ptgr1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 18431393 ~ 18437596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822756.1
TAAGGATTGAAGCCTGGCTCCTGCCTTCTCGCCTCCCAATTTATTCAACAACCCTCCGCCGCTGCTCCCTGCTCCTGTCCTCAGTGAGTTCACGACTTTTGCTATTTCTTTGTGGAGAACGACAATAGCTGCCCCGAACAGATAACCATGGTCCAAGCCAAGACGTGGATCCTTACCAAGCACTTTGACGGCTTCCCGAAGGACAGCGACTTTGAGCTTAAGGTGGAGGAGCTTTCGGCACCCAAAGATGGGGAGGTGCTTTTGGAAGCAGTGTTTCTCAGTGTCGACCCATACATGAGGCCATTCAGTAGGGTTCGCATGAATGAAGGCGATGTGATGATTGGAACTCAAGTGGCCAAaGTGATTCAAAGTAGTAACCCAGCATTTCCTGTGGGAAGCCATGTTGTTGGTCGTTGTGGCTGGAGAACCCACACAGTCTGTGATGGGACAGACCTCATTCCAGTCATGCCTGACTGGCCGCAAGACGTCTCGTTGTCCCTGGCTCTGGGTGGCATCGGCATGCCAGGACTGACAGCTCTGTACGGGATAGAAGAAGTCTTGGGACTCCAGAAGGGGGAGACCCTGCTGGTGAATGCTGCAGCCGGGGCAGTGGGCTCCGTGGTGGGCCAGATTGCAAAGATCAAGGGCTGTAAAGTGGTGGGTTCAGCAGGGTCTGATGCCAAGGTGGCTTTCCTCAAAGAACTGGGCTTCGATGAGGCCTTCAACTACAAGACTGTTGGTTCCCTGGAGGAGGCACTGAAGAAGGCTTCTCCAGAAGGATATGACTGTTTCTTTGAAAATGTGGGAGGCCCTTTTTCAAGCGTTGCGATACAGCAAATGAAGAACTTTGGAAGAATAGCTGTGTGTGGAGCTATTTCCACATATAATGACACCACACCCCAAACAGGCCCATACCCCCACCTGACCATGATCTTCAAGCAGCTTAAGATGGAGGGCTTCATGCAGAGCAGGTGGGAGCACAAGCACCCGGAGTCCCTTAAGAGGCTGATAGGATGGTTGAAAGAGGGCAAACTGCAGTGTCGGGAGCACATCACAAAAGGCTTTGAAAAGATGCCAGCTGCTTTTATGGGGATACTGCAGGGAGAAAACGTCGGCAAGGCTATTGTCGCAGTCTGATGTGGAAAGCGAGATCAATGGAGAAGAATCAGTATTATTAATACCTGACCCATTATTACAGAATTCATACATGAAGGACTGAGCAGTAGACAGTTGGCAACTATTTTTTCTTCGTattaacagataaaaaaatgtgattcatcATATTTAGCATTAGTTCAGAAGTCATTGTTAGAGAGTTAAGTCtgaaaccattttttttatttagatggTTTTATCAAACTGCAACATCTGCTAGGTTTGGATTTTCATTCATGGTAAGGCACATTTTTTGGTAATGCGTTTAAATAAAATAGTTACTTTAAAGAATCCCTTTTGGAAGCACAAATCTTAGCATTTGTTCCTCATGTGCCACTACATGGTAGCAAACTAGTTGAACCTACTgaatttttttacaaattagtttttaacCACCATCCAGATAATTGAGTATACAGAACATTGTTTGGGAGACCTCAGACTACTGTGGGAAATCGGCAAGGTACGAGAAGAGCGTTTTACTCTATGAGGTCGACCCAAGATTGTTGGTCTTCTATGCCAGAAAGTACCTGAATGAGATGTGTAGATCTGCTGCTGATACATTCATACGTTACTCACTGTAACATAATTAACCATGTGCTTTGTATTTAGTGAGAGCTTTTGTATAAGTAATAAAATTCAGCgtatttgttttcaaa
>XM_039822757.1
GGAGGCAGCGTTTACTTTTCATTCCAACCAATACATTTAAGGATTGAAGCCTGGCTCCTGCCTTCTCGCCTCCCAATTTATTCAACAACCCTCCGCCGCTGCTCCCTGCTCCTGTCCTCACTGCCCCGAACAGATAACCATGGTCCAAGCCAAGACGTGGATCCTTACCAAGCACTTTGACGGCTTCCCGAAGGACAGCGACTTTGAGCTTAAGGTGGAGGAGCTTTCGGCACCCAAAGATGGGGAGGTGCTTTTGGAAGCAGTGTTTCTCAGTGTCGACCCATACATGAGGCCATTCAGTAGGGTTCGCATGAATGAAGGCGATGTGATGATTGGAACTCAAGTGGCCAAaGTGATTCAAAGTAGTAACCCAGCATTTCCTGTGGGAAGCCATGTTGTTGGTCGTTGTGGCTGGAGAACCCACACAGTCTGTGATGGGACAGACCTCATTCCAGTCATGCCTGACTGGCCGCAAGACGTCTCGTTGTCCCTGGCTCTGGGTGGCATCGGCATGCCAGGACTGACAGCTCTGTACGGGATAGAAGAAGTCTTGGGACTCCAGAAGGGGGAGACCCTGCTGGTGAATGCTGCAGCCGGGGCAGTGGGCTCCGTGGTGGGCCAGATTGCAAAGATCAAGGGCTGTAAAGTGGTGGGTTCAGCAGGGTCTGATGCCAAGGTGGCTTTCCTCAAAGAACTGGGCTTCGATGAGGCCTTCAACTACAAGACTGTTGGTTCCCTGGAGGAGGCACTGAAGAAGGCTTCTCCAGAAGGATATGACTGTTTCTTTGAAAATGTGGGAGGCCCTTTTTCAAGCGTTGCGATACAGCAAATGAAGAACTTTGGAAGAATAGCTGTGTGTGGAGCTATTTCCACATATAATGACACCACACCCCAAACAGGCCCATACCCCCACCTGACCATGATCTTCAAGCAGCTTAAGATGGAGGGCTTCATGCAGAGCAGGTGGGAGCACAAGCACCCGGAGTCCCTTAAGAGGCTGATAGGATGGTTGAAAGAGGGCAAACTGCAGTGTCGGGAGCACATCACAAAAGGCTTTGAAAAGATGCCAGCTGCTTTTATGGGGATACTGCAGGGAGAAAACGTCGGCAAGGCTATTGTCGCAGTCTGATGTGGAAAGCGAGATCAATGGAGAAGAATCAGTATTATTAATACCTGACCCATTATTACAGAATTCATACATGAAGGACTGAGCAGTAGACAGTTGGCAACTATTTTTTCTTCGTattaacagataaaaaaatgtgattcatcATATTTAGCATTAGTTCAGAAGTCATTGTTAGAGAGTTAAGTCtgaaaccattttttttatttagatggTTTTATCAAACTGCAACATCTGCTAGGTTTGGATTTTCATTCATGGTAAGGCACATTTTTTGGTAATGCGTTTAAATAAAATAGTTACTTTAAAGAATCCCTTTTGGAAGCACAAATCTTAGCATTTGTTCCTCATGTGCCACTACATGGTAGCAAACTAGTTGAACCTACTgaatttttttacaaattagtttttaacCACCATCCAGATAATTGAGTATACAGAACATTGTTTGGGAGACCTCAGACTACTGTGGGAAATCGGCAAGGTACGAGAAGAGCGTTTTACTCTATGAGGTCGACCCAAGATTGTTGGTCTTCTATGCCAGAAAGTACCTGAATGAGATGTGTAGATCTGCTGCTGATACATTCATACGTTACTCACTGTAACATAATTAACCATGTGCTTTGTATTTAGTGAGAGCTTTTGTATAAGTAATAAAATTCAGCgtatttgttttcaaa
>XM_039822758.1
GCTAACAGAAAGCAGTTTGTTCAAATAGAAAATACTAGTGAAACATGAAGTAAGCTATCCTAATGAAATAAATGCAACAATGAGTAACTTTCCCGAGATCAGTGCTAAGAGTGTATTGAGAGAGGCTGCATATAGCCCATAGTTTAAACAGAATAGAATTTAGAGGTTTCTTTTTCGTCCCCCTGGATATCATACTGTACAACAACAACTGTGGTATGTGGTATCGCACATCACTAATTATAACCTTCATCAAGCTGCCCCGAACAGATAACCATGGTCCAAGCCAAGACGTGGATCCTTACCAAGCACTTTGACGGCTTCCCGAAGGACAGCGACTTTGAGCTTAAGGTGGAGGAGCTTTCGGCACCCAAAGATGGGGAGGTGCTTTTGGAAGCAGTGTTTCTCAGTGTCGACCCATACATGAGGCCATTCAGTAGGGTTCGCATGAATGAAGGCGATGTGATGATTGGAACTCAAGTGGCCAAaGTGATTCAAAGTAGTAACCCAGCATTTCCTGTGGGAAGCCATGTTGTTGGTCGTTGTGGCTGGAGAACCCACACAGTCTGTGATGGGACAGACCTCATTCCAGTCATGCCTGACTGGCCGCAAGACGTCTCGTTGTCCCTGGCTCTGGGTGGCATCGGCATGCCAGGACTGACAGCTCTGTACGGGATAGAAGAAGTCTTGGGACTCCAGAAGGGGGAGACCCTGCTGGTGAATGCTGCAGCCGGGGCAGTGGGCTCCGTGGTGGGCCAGATTGCAAAGATCAAGGGCTGTAAAGTGGTGGGTTCAGCAGGGTCTGATGCCAAGGTGGCTTTCCTCAAAGAACTGGGCTTCGATGAGGCCTTCAACTACAAGACTGTTGGTTCCCTGGAGGAGGCACTGAAGAAGGCTTCTCCAGAAGGATATGACTGTTTCTTTGAAAATGTGGGAGGCCCTTTTTCAAGCGTTGCGATACAGCAAATGAAGAACTTTGGAAGAATAGCTGTGTGTGGAGCTATTTCCACATATAATGACACCACACCCCAAACAGGCCCATACCCCCACCTGACCATGATCTTCAAGCAGCTTAAGATGGAGGGCTTCATGCAGAGCAGGTGGGAGCACAAGCACCCGGAGTCCCTTAAGAGGCTGATAGGATGGTTGAAAGAGGGCAAACTGCAGTGTCGGGAGCACATCACAAAAGGCTTTGAAAAGATGCCAGCTGCTTTTATGGGGATACTGCAGGGAGAAAACGTCGGCAAGGCTATTGTCGCAGTCTGATGTGGAAAGCGAGATCAATGGAGAAGAATCAGTATTATTAATACCTGACCCATTATTACAGAATTCATACATGAAGGACTGAGCAGTAGACAGTTGGCAACTATTTTTTCTTCGTattaacagataaaaaaatgtgattcatcATATTTAGCATTAGTTCAGAAGTCATTGTTAGAGAGTTAAGTCtgaaaccattttttttatttagatggTTTTATCAAACTGCAACATCTGCTAGGTTTGGATTTTCATTCATGGTAAGGCACATTTTTTGGTAATGCGTTTAAATAAAATAGTTACTTTAAAGAATCCCTTTTGGAAGCACAAATCTTAGCATTTGTTCCTCATGTGCCACTACATGGTAGCAAACTAGTTGAACCTACTgaatttttttacaaattagtttttaacCACCATCCAGATAATTGAGTATACAGAACATTGTTTGGGAGACCTCAGACTACTGTGGGAAATCGGCAAGGTACGAGAAGAGCGTTTTACTCTATGAGGTCGACCCAAGATTGTTGGTCTTCTATGCCAGAAAGTACCTGAATGAGATGTGTAGATCTGCTGCTGATACATTCATACGTTACTCACTGTAACATAATTAACCATGTGCTTTGTATTTAGTGAGAGCTTTTGTATAAGTAATAAAATTCAGCgtatttgttttcaaa

Function

symbol description
ptgr1 Predicted to enable 15-oxoprostaglandin 13-oxidase activity. Predicted to be involved in prostaglandin metabolic process. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in cytoplasm. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to human PTGR1 (prostaglandin reductase 1).

NR:

description
PREDICTED: prostaglandin reductase 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13948 PTGR1, LTB4DH; prostaglandin reductase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822756.1 False 1814 mRNA 0.45 9 18431393 18436198
XM_039822757.1 False 1806 mRNA 0.46 9 18431393 18436235
XM_039822758.1 True 1940 mRNA 0.44 9 18431393 18437596

Neighbor

gene id symbol gene type direction distance location
txn NA coding downstream 1660 18425792 ~ 18429733 (-)
slc7a8a LOC104932911,LOC102238406,LOC103388347,LOC103358414,LOC103475980 coding downstream 142559 18267721 ~ 18288834 (-)
gmpr2 LOC104953876 coding downstream 166376 18259034 ~ 18265017 (-)
tinf2 NA coding downstream 189539 18234060 ~ 18241854 (-)
efs LOC103358409 coding downstream 202386 18218944 ~ 18229007 (-)
nat8l nat8l,LOC106918818,LOC104966448,LOC106577818 coding upstream 61144 18498740 ~ 18522741 (-)
faah2b faah2 coding upstream 113944 18551540 ~ 18561053 (-)
pik3c3 pik3c3 coding upstream 175077 18612673 ~ 18626072 (-)
rgp1 rgp1 coding upstream 194482 18632078 ~ 18637992 (-)
LOC120572304 ipo8 coding upstream 227595 18665191 ~ 18701577 (-)
LOC120573605 NA non-coding downstream 181336 18248443 ~ 18250057 (-)
G144037 NA non-coding downstream 412087 18016249 ~ 18019306 (-)
LOC120572704 NA non-coding downstream 428922 17992145 ~ 18002471 (-)
G144013 NA non-coding downstream 541741 17887278 ~ 17889652 (-)
G143898 NA non-coding downstream 667688 17762380 ~ 17763705 (-)
G144275 NA non-coding upstream 262613 18700209 ~ 18700555 (-)
G144303 LOC103360597 non-coding upstream 390868 18828464 ~ 18830315 (-)
G144346 NA non-coding upstream 498379 18935975 ~ 18936227 (-)
LOC120572676 NA non-coding upstream 555873 18993469 ~ 19002231 (-)
G144422 NA non-coding upstream 660986 19098582 ~ 19098840 (-)
mrpl52 mrpl52,LOC102784052 other downstream 258366 18169214 ~ 18173027 (-)
G144058 NA other downstream 307703 18113852 ~ 18123690 (-)
LOC120573700 LOC100692994,LOC102197104,LOC102799729,LOC101170466 other downstream 350589 17973899 ~ 18080804 (-)
smim20 NA other downstream 577556 17852371 ~ 17853837 (-)
rbpjb rbpj,LOC106534282 other downstream 610315 17764186 ~ 17821078 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other upstream 98547 18536143 ~ 18539623 (-)
G144258 NA other upstream 157506 18595102 ~ 18597231 (-)
clcn3 clcn3 other upstream 525270 18962866 ~ 19056782 (-)
prkd4 LOC103376196 other upstream 810354 19247950 ~ 19266353 (-)
LOC120572670 NA other upstream 845337 19282933 ~ 19353306 (-)

Expression


Co-expression Network