zcchc4 (LOC104953644,LOC104953641)


Basic Information

Item Value
gene id zcchc4
gene name LOC104953644,LOC104953641
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2808900 ~ 2824015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822856.1
TTCATGACGTCAAATCTGCGCGACTACAAACAGCATGCGCACTTGTCAGGCGGACTGAGCATCTTTGGCTGAACTCTCGTAGTTGTTGTCTCTGTTTAGTGTAAAGTTTATTGACTGTTGAACTCTAAAGACATGGACGTGACCGAGGCTAACGACGACAGTTTTGGAATAGAAGTTATTCTTCCACAGGGCGGAAAAACAGCGCCATGTTGTCCGCATGGTCCAACCTTGCTATTTGAGAGAGTTAGCAAAGGAGGGGAGAAAGGCAGGAGGTTTTATGCCTGCTCAGCCTGCAGAGACAGGAAAGACTGCAACTTCTTCCAGTGGGAAGATGAAAAGGTGTCGGAGGCCAGGCTTTTGgccagagaagcagagaagcaGTCAAAGAGGCCTCTGGTCACCCAGCAGGAGTACTGTAACAGGTTCAGGAAGTTTTCCGCCCTCCCGCTGGATGAGAAGAAGTTCTGTCAGGATTGTCAGATTTTGCTGCTGCCAGGGTTGCACGAGGCCCACTCCTCTCACAGATCCATGGCTGTCTCCCCCGCCCAGCTGACCAGGCCCAGTGTGCTGCTGCGCCCTCTGGACAACAAGAAGAGCAACGCCCAGTACCTGTTCACCGAGCGCAGCTCCCACTTCCTGCTGGACAGCCTGGCTGCTCTGGGATTCACCAAGGTGCTGTGTGTGGGCACACCCAGACTTCAGGAGCTGATCAAATTACGAAACCTGGATCAGAAACATAAGCCAATGAAGAGTCTGCTGCTGGACATTGACTTCAGATACGCTCAGTTCTACAGCCAGGATGAGTTCTGTCACTACAACATGTTCAACCATCACTTTTTTGATGGAGAGGCTTCCGGTGCGGTGCTGCAGGCCTTCCTCCAAGAGGCTGACGGCCAGAAGGTGGTGATGGTGGCGGACCCTCCGTTCGGCGGCCTGGTGAAGCCTCTGGCCAACACCTTCTCTCTGATTTCACAGAGCTGGAGGAAGCTGCAGACTTCTGacAGCAGTAACACTGAAATGCCCATGATGTGGATCTTCCCATATTTCCTTGAGCCTCGCATCCTGGAGTGTTTCCCCTCATTCACGATGCTGGACTACCAGGTGGACTATGACAACCATTCTCTGTATAAACATGGGAAGACAGGCAGGAAGCAGTCTCCTGTTCGCCTCTTCACTAACATATCGCCCAAAGATGTCGTCCTGCCCAAAGACGAGGGCTACAGATTTTGCTCTATATGTCAGAGATTCGTCTTGTTCCTCAACAAGCACTGTGCCAAATGCAACGTCTGCCCATCCAAGGACGGCCGAGAATGGAAGCACTGCTCAACGTGTGGGAAATGTGTGAAACCATCGTGGAAGCACTGCCAGGCGTGCGGCCGCTGTGCCCTCCCAGCCCACCCCTGTGGACTGGGCCAGTCAGAGGACGGGTGCTTCAGCTGTGGCAGCCGGGAGCACAAACGCAAAGCCTGCCCTCTCAAAGACTCGCACAGGATCAGCAATCATCGCTCCAAAGCCAAGAGTGGAGGCAAAAATGTATCCCGTCATCCCCTGGTGAAGCCTAAAGCTAAGAGGATGTCTGGAGGCGCTCGCAGAGCAAAGAAGATGGCCGCTCTGTCCAAGTGACCTCAGCATTGATGCAGTATCTGTCAGCTGTGCAATAACTTCTTTTATTTAAACTCAAAGGACTGTTCAACAGTGTCAGCAGTTGTTGTAgtagaaaaaagtaacaaaagagaGTTTGCCTTGTATTTTCATTGACATGCATAGACACCCAAAGTTGGTATATGGCAGCATTtttaatgaataaattaaaataacagTTA

Function

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 4-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822856.1 True 1823 mRNA 0.51 13 2808900 2824015

Neighbor

gene id symbol gene type direction distance location
mad2l1 mad2l1,LOC102790739,LOC103155071,LOC106941438 coding upstream 139769 2664689 ~ 2669131 (+)
ank2b ank2,LOC103361685,LOC107384730 coding upstream 358658 2278934 ~ 2450242 (+)
LOC120572444 NA coding upstream 598341 2210208 ~ 2210559 (+)
LOC120572142 NA coding upstream 706528 2038970 ~ 2102372 (+)
paqr9 paqr9 coding upstream 1066531 1739323 ~ 1742369 (+)
afap1 afap1 coding downstream 132333 2956348 ~ 3108934 (+)
hacd4 hacd4 coding downstream 332779 3156794 ~ 3167756 (+)
LOC120572274 NA coding downstream 638406 3462421 ~ 3470210 (+)
lrch4 lrch4 coding downstream 869023 3693038 ~ 3787295 (+)
LOC120573426 NA coding downstream 1325903 4149918 ~ 4158154 (+)
G140746 NA non-coding upstream 11378 2797252 ~ 2797522 (+)
G140741 NA non-coding upstream 78793 2729774 ~ 2730107 (+)
G140740 pde5a non-coding upstream 83243 2710706 ~ 2725657 (+)
G140738 NA non-coding upstream 123745 2684519 ~ 2685155 (+)
G140737 NA non-coding upstream 129837 2673366 ~ 2679063 (+)
G140763 NA non-coding downstream 659 2824674 ~ 2825867 (+)
G140770 NA non-coding downstream 285099 3109114 ~ 3112461 (+)
G140820 NA non-coding downstream 388628 3212643 ~ 3213025 (+)
G140836 NA non-coding downstream 611445 3435460 ~ 3435678 (+)
G140837 NA non-coding downstream 611837 3435852 ~ 3436138 (+)
G140613 NA other upstream 749533 2055439 ~ 2059367 (+)
G140594 NA other upstream 776675 2022592 ~ 2032225 (+)
G140582 NA other upstream 778273 1929623 ~ 2030627 (+)
frem1a frem1,LOC106908230,LOC105925506,LOC101079287,LOC108244244 other upstream 1083432 1677210 ~ 1725468 (+)
LOC120572292 NA other upstream 2185865 621116 ~ 623035 (+)
ablim2 ablim2 other downstream 4037 2828052 ~ 2954690 (+)
mllt3 mllt3 other downstream 432498 3256513 ~ 3433803 (+)
zgc:112271 LOC103361642,LOC104959592,LOC100706616,LOC104935668 other downstream 1489136 4313151 ~ 4315545 (+)
G141060 men1 other downstream 1616623 4440638 ~ 4444947 (+)
G141063 NA other downstream 1659677 4483692 ~ 4487607 (+)

Expression


Co-expression Network