LOC120573430 (LOC104952638,LOC104923974)


Basic Information

Item Value
gene id LOC120573430
gene name LOC104952638,LOC104923974
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 15338869 ~ 15353637 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823155.1
GAGACCATCTGTATGTTGCACCGGGTGTAACcaacaagctaacgttaggctagttagatgtagctagctagctagctagctttagATTCTTGTCGGTGTACGCAGCTGTCGAATGAACATTTAAAACACGAGTATTAAGTGATACTGATGAAACTCGTTGGCGTCACTTTATTTTACAATCACACTACTGCTGCTGTCTTCGGTTACGCTGTTTTCATCATTAGCTGCCCGTGTTGGTCAGTTAGCTAGTTAGCCTCTTCTGCTAGTTAGGTACAGTAGCGTATGGGTGTCAAAGTTAGCAGTGACTTCACCGGGTGTCTGGTTGCCTGATCTCACATTTCGGACACGTCAAGgTTCTTCAAATCTGTCCCTTGATTTTGGGGGCTGTGATGTCGGAGCCTAAGACCCCCACTCCCGCTCCTGCTGGCGACACATACAAAGGATGGGTGTTCAAGTGGACAAATTACATCAAGGGTTATCAGCGGAGGTGGTTTGTCCTGAGCAATGGCTTGTTGTCATACTACAGGACCCAGGCAGAAATGGGCCACACGTGTCGAGGCACAATCAACTTGGCCACAGCAACTATCACTGTGGATGACGCCTGCAACTTCGTCATCTCCAATGGCGGGGCGCAGACGTACCACCTGAAGGCCAGCTGTGAAGTGGAACGGCAGCGCTGGATAACTGCCCTAGAACTGGCTAAAGCTAAAGCAGCCTGCATGCAGGCAGAGTCAGATGACTCAGGGGATGACTTTTCCCCATCATCCCCACCGGTGGCACACGGACAAGGTGGCGGGTCACAGAATTCAGAAGTTCAGTCTGCTCTCAGAACGCTAGGCAGCAAGGTGGAGGATCTGAGCACATGCAATGACCTAATTTCAAAGCATGGCTCTGCCCTCCAGAGGTCTTTATCAGAACTGGACAGTTTGCGTCTGACTGGAGAGGCTGGGGATAAGATCCGTCAGGTGACGGAGAGGGCCACACTGTTCCGCATCACCTCTAATGCCATGATTAATGCGTGCCGAGACTTCCTCTCGCTGGCTCAGGCTCACAGCAAGCGATGGCAGAAGGCCCTTCAAGCAGAGCGGGACCAGCGGGTAAGGCTGGAGGAGACTTTAGAGCAGCTGGCCAAGCAGCACAACAACCTGGAGCGAGCGTTCAGAGGGGCTGCACAGGCTAATGCAACTGCAGACAATAAAAgtTCTGCCGGGCCAGGAAAAGGTGAGGCCAGTGACGAGGACGACGACAATGAGTTCTTTGATGCCATGGAAGAGGCTCCTGAGTTTATCACTGTACCTGCAGATCCCCATTTCCACAAAAGGTCAAGCAGTAATATCAGCGGTTTCAACAGTGAAATGTGTCCTGATGATCAATCGCTTAATGAGGAGCCTCTCGTGATGAACCAGGAATCTCCCTCTCAGGAGTTGATACCtctgaagaagaggaggacacGCATTCCAGACAAGCCAAACTACTCTCTCAACCTGTGGAGTATCATGAAGAACTGTATTGGCAAAGAGCTGTCCAAGATCCCCATGCCTGTAAACTTCAACGAGCCCATTTCCATGCTGCAGCGGTTGTCGGAGGACCTCGAGTACCACGAGCTGCTGGATAAGGCCTCCAAGTGCCAGAGTTCGCTGGAGCAAATGTGCTACGTGGCTGCCTTCTCCGTGTCCTCCTACTCGACCACCGTCTACCGCACAGGCAAGCCCTTCAACCCTCTGCTGGGAGAGACGTATGAGCTAGACCGCCGGAGAGAGAGCGGCTACCGCTCCCTCTGCGAGCAGGTGAGTCACCACCCCCCTGCAGCAGCGCATCATGCGATCTCTGATCGCGGCTGGACCCTGAGACAAGAAATCACTGTTGCCAGCAAGTTCAGGGGAAAATACCTCTCCATTATGCCTTTAGGCACAATTCACGCAGTCTTTGAAAAGGGCAACAATCACTACACATGGAAGAAAGTGACCACCACAGTGCACAACATCATTGTAGGAAAACTATGGATCGATCAGTCAGGAGAGATAGACGTGGTGAACCACACCACCGGAGACCGCTGCCACCTTAAGTTTGCTCCTTACAGCTACTTCTCCAGAGATGTGGCCAGGAAGgTCACAGGTGTGGTGATGGACAAGGACGGCAAGGCCCACTACGTGCTGTCGGGCACGTGGGATGAGAAGATGGAGTTTTCCCGGGTGATGCAGAGCAGCCGAGGAGGAGAGAATGGCACAGAGGGCAAACAGAAGACGGTCTATCAAACCCTCAAAGCCAGAGAGGTTTGGAGGAGGAACCCTTTACCTGAGGGAGCAGAGACCATGTACTACTTCACTGCCTTGGCGCTGACCCTAAACGAGTTTGAGGAGGGCGTGGCGCCCACTGACAGCCGGCGCCGGCCTGACCAGCGCCTGATGGAGGACGGCCGCTGGGAAGAGGCCAACTCGGAGAAGCAGCGGCTGGAGGAGAAGCAGCGCAGCGTCcggcgggagagagagagggaagctGCCAGCCAGCGGACCTCCAGCCAGTCAGAAGAAGCTGTCGATGAGGACTCTCTTACTGATCCGTCCTTAAAAAgcGCACCTCATGACAGCTACCAGGCACTTTGGTTCGAGCGCTGTGAGGACCGGATCACAGGTGAGCAAATACATATCTATAAGGGAGGCTACTGGGAAGCAAAGGACCGTGGCAGCTGGGAGGGCTGTCCCGACATCTTTTGACCTCGGCTTTGACTGCCCCTGAAGAGACTGATCCGTTGAAGCCGCCTAAGTGAACAGCTACTGCAAAGGCCGGCTTGTCCCCCCACTTGGACGGCTGCCTCCCCCCAGTGGCTCTCTGTTTTAAGAGATCTCCAGGACGATCTCTGCTGTCTGATCCAGAGGGGGAGCAGAGTTTTCCTCCGGCCTCCCTCATCCCATTTTGGTTCCTGTCTTCGCACCTACCCCCTTGTTGCTGTAACACGTGTGAGAGGACtggaatgaaaatgtttgtgctGCTTTGACTCGGGTCAGGCTGAGAATAAGGGGGAGGAAATGAAATGGGAAGGGCTTCCAAAAAATCATTAGTAAAACAATTTTTAGTCTCTCTGCTCAAGTCTGTGCAGCCTCTCAGATCAGGAGCAGAAGAGGTTTCATGCTGATAACCGTAGTGTTCTATTGCCATCCACAGCATTGTGTGCTTTGgtaataacttaaaaaaaaaaaaaaaaaaaaaaaagggtaataCCTGGTTAATATATaaatttatatataattatGATTCAAATAATTTCATTAATATGTTGACTGGTGGCCTTCAAGACGTAAGTGAGGATTTCTTGTTTATCTCTCTGATTTAGTGTCTTAATGTAATGCAGTGAAGGTTCtagtgtgcttgtgtgtatgaCTGCATATCTGCTCTTCCATCACTTTACAACACTGCCACTGTGCAGTATactgtgttttaaaaaagtaatgATTGTCCAAAATACTGGTTGAACCTCCacactgtcattttttttatacttagAAGATTTGTTTGATTCTTCACAAAGGCCTGATGGAAATTATGATGGTGACATTTTTGATGTGGCTCAAACACTCTTTGTCTTCGCCTTAGAAATGAGCAACCTTGCTCTCACTTGTTTTTACATCACACCTGACTGGATTTGACGCCGACATTTGTAGCTGGTTTCTTGTACAAACATTATAAACTTTGAAGAAGTAGTTGGGAAAGACTACAGAGCTGCAAAATGGCAAAACACACGTTCCAGTGCTGAGAAAATCTCACATTAGTGCAGTTTTATTCAATAACAATTAATGAAATGACACCTTTTCACAATATTGGTATGATGTTTGAGCCATTTTGCAGATACAATAAGTGAATGGTAACTGTGTTACATGGCAGTAAAAATGGAATGGGATATgtggtgtgatttttgtgtttAGAGGAACACAGACAAATGAGAAAAGACAAGTAAATGCAGTGGTGAAAATAAACCTTTGTGTATCGGCTGAAGAGTTCATACATATGCAAGTGAATTTTGACACCAAAaaatggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccaagcGTGTGTGAATTGTTTGTAAGTGTACTTAAAAGTGAAgaataaagaaacaaagagTTTAAAGCATTGAAAATAACAatgattttataaatgtaatgtaatgaaattCAGATAGTATTGATAACTGTaaggtagtttttttttcttgtattttttgGTTCCTCGCATTGGAAGAGGTcttcattttcagaaaaaaagggaGTTTCCATACTTAACCGAGAGGGGAGACATGACATTGTTCAGTACTTTGTATTAACAAAGACAAAGAATCTGTAATAAACAAATGCTGTGATGTCAAGCATATAGCTTTTCACACTCTTCTTTAAATTTCACATGTTCCAACATTtccattaattattaattaagtaACACAATTAAAGACTTGCCAAATCGATTCTTTGGGAATTTCTCATGTTCAGTAGGAGCTCCAGACGGGACGACATATGttgtcaataaaataataaaacccaATGGAAAGAG

Function

NR:

description
PREDICTED: oxysterol-binding protein 1-like

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG:

id description
K20456 OSBP; oxysterol-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823155.1 True 4559 mRNA 0.47 17 15338869 15353637

Neighbor

gene id symbol gene type direction distance location
LOC120572506 LOC104952638,LOC104923974 coding downstream 649 15335090 ~ 15338220 (-)
LOC120573428 LOC100691766,LOC101464677,LOC102785851,LOC102193527,LOC104952637 coding downstream 6206 15327456 ~ 15332663 (-)
LOC120572736 LOC107094197,LOC101175051,LOC106520906,LOC106931240 coding downstream 94921 15234234 ~ 15243948 (-)
LOC120572502 LOC102788115,LOC101471575,LOC102294957 coding downstream 111918 15216695 ~ 15226951 (-)
mfsd8 mfsd8 coding downstream 129102 15203797 ~ 15209767 (-)
trnar-ucu_16 NA coding upstream 610 15354247 ~ 15354335 (-)
LOC120572694 cpz coding upstream 258069 15611706 ~ 15620641 (-)
LOC120572190 gpr78,LOC102198312,LOC100693923,LOC104952649,LOC103358009 coding upstream 269666 15623303 ~ 15628703 (-)
trmt44 trmt44 coding upstream 294774 15648411 ~ 15664148 (-)
LOC120573214 plscr3 coding upstream 326608 15680245 ~ 15690181 (-)
G143348 NA non-coding downstream 4081 15333883 ~ 15334788 (-)
G143344 NA non-coding downstream 22082 15313965 ~ 15316787 (-)
G143317 NA non-coding downstream 52471 15276713 ~ 15286398 (-)
G143292 NA non-coding downstream 146708 15189996 ~ 15192161 (-)
G143281 NA non-coding downstream 256839 15079305 ~ 15082030 (-)
G143356 LOC100690702,LOC103375269,LOC102194098,LOC101464393,LOC102785273 non-coding upstream 9958 15363595 ~ 15365593 (-)
G143357 NA non-coding upstream 13145 15366782 ~ 15367391 (-)
G143364 NA non-coding upstream 37108 15390745 ~ 15391085 (-)
G143365 msantd1,LOC102784318 non-coding upstream 37598 15391235 ~ 15391491 (-)
LOC120572697 NA non-coding upstream 239457 15593094 ~ 15605222 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other downstream 216913 15086865 ~ 15121956 (-)
rpl34 rpl34,LOC107566275 other downstream 2736196 12598753 ~ 12602673 (-)
G142916 NA other downstream 2923714 12413754 ~ 12415155 (-)
LOC120573137 ppp3ca,LOC103369319 other downstream 3275443 11994914 ~ 12063426 (-)
LOC120573414 LOC104960590,LOC106514884,LOC103390236,LOC107084127,LOC106908847,LOC101464045,LOC100704366,LOC102310755,LOC102193047,LOC102788271,LOC103369314,LOC103129513 other downstream 3403096 11910451 ~ 11935773 (-)
phf23b phf23 other upstream 343462 15697099 ~ 15702094 (-)
acap1 acap1 other upstream 666020 16019657 ~ 16043319 (-)
LOC120572710 nwd2 other upstream 1044296 16397933 ~ 16454928 (-)
LOC120572513 NA other upstream 1876962 17230599 ~ 17249632 (-)
tbc1d19 tbc1d19 other upstream 2380695 17734332 ~ 17753015 (-)

Expression


Co-expression Network