LOC120573457 (LOC104966162)


Basic Information

Item Value
gene id LOC120573457
gene name LOC104966162
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11977893 ~ 11991500 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823195.1
AAGTGGTGTCAgagcagaaaagaaaaagaagtgatGGCCATTACTCAAGACTGAGATTCCTGTTAAAAGGACATAGGTTTTGCACCCACTGGCTGCCTTGTGCTGGTCTCCACAGCTACCCACTTTTACGTCAGCAAGGGAAGCCAGTGTATTTCCTCCCCTTCTTTATCTAAAGGAAGTGCCAAAATAAGCATCAGCAGCGGAGCGCTCGAGCACCTTTTCCACTGGCCACTTAGTTGGGGTCCGAGGAAGAAGTCGGGAGGTTAACAACTGCAGAATCACCATGAAGACCATCGGGGTTCTTGTCCTCCTCCTGCTAGCATCTGTCCATGTCTTCACACAAGTTTTATCATCAGATCAGCAAAATTCGACGACAGTACCAGCAAGTAACCATACAATAACACCAActacagcagcaaaaacaacagcagcagcagcatcaaccTCAACAACATCACCAGCAGCCACATCAACAACCCAAAAGGTCTCAGCAGCaccaacagcaacagcaacaccaACACCaaaagcaacagcaacagcaacatcAGCAGCCCGTGTATCTCCCCCTGCTCTACCTGATGCCACCAGCAAAACTCCTGACACTCTAGAACATGAATCTTTGGACACACGCTCTAACCACTCTGAGTCAGGAAACCACTCTAAGACCCCAACTAATTCTGAAGCTCTAGAACATGAATCTTTGGACACACGCTCTAACCACTCTGAGTCAGGAAACCACTCTAAGACCCCAACTAATTCTGAAGAACGTGAAGCCGCTGAGAAACTAAACACAGGCAAAGGTCCAACTACTCCTGCCTCAGAACCGCATCAAACCACTGCACCCGCAGTGACGCAAACTCATCCGAATGAAAATGATAAAGGTGTTGGTCGTCATGCTGGCATTGATGAGAAATTCTCCCCCAAAGCAGACAAAAGGCTGTGGTGGATTGTGTTGCCTGCCCTCCTGGTTGGAGCTGCTGCAGCCATTGTGCTCAAATTCAAATGCAAGAAGATCCATGATCACACAGAAACCATTGATACTGGAACTGAGAACGCATCTTTCCAGAGCAGACCCGAAAGCACTAAAGATGGTGTCATGCTCCTCGGAGTGAAGTCATCAGACGGAGACAGGGCCTGCCAGATTGATTTTTGCGAGAATGTTGAacattaaatacttcatttcctgcattcagCTGCtgcgagataaaaaaaaataaataaaaaaagaagaagaagggcaGCAACATCAAGATCAGCCAGCGGATGAGTCACACCTGTCGCCCACACACGGACGGTCTGGAGGAACTGTTGTTTAGATGTTTGTGAATTCTGTGTAACATTTTGTGAGGCAGAAAAGTATGATGATGTATGCTAAAAGCTGTTTTGTTTGCAACTGTGATCATAAATCTCAGAGTAAGTGAACTTATTTTCAACCCAAATATTGAAAATAACAGGCTTAATACATTACAGGCTTAATACAGTACATCTCTTTGAATTGATATTGTGTCTGTGGAATATATTTAATGAACCTAGTCTATGCACCCTTTTTTTCAGTATACTGTTGACAAATAGACAAACCTAAGTACAGCTGCATAGCTCATCTCCATGTTGGGCCATTCTCTGTACAGTGCACTGACCTCAGATATTTATCACTGTTCATTTCATAGTTTTATAATTATCCTTTGGTTGTGTTGTTACTAGGGGTGTAAATCACAAGTTATGACGATACGATTTTAAATCGATTCTTTGGACAACGATATGATATTTGCTGATGTCACAAAGTCTGCCACGATAACATTATGATTTGATTCAATTCAGGGGCCTGCGATCGATATGAGCTGATATATCATATGTCCATTTAACACATTcagttacatttatattaaCTCAAAAAACGCAACTAAAATACGATTTGACAATTGTAATACTGAGCTTGtccagacatttaaatgaaaaacaaactattctttttaataaaaaataataaatataaagttggaattttaaaataaaatcaatattttcactttgtattgATATTGGATCGTTGCTCATTGAATCGATATATGGATCCAGATCGATGTATTATTACACCCCTAGTTGTTACTCACCTGCCTGGAACTATTTTGTAGATTGTGATGGTTTTCTTTTTGTGGGGCTTAATGGggaggtggggaggggggggggtataAGAACAGGTTCTTTTGTACTCATTTTTACTTTTCATGTATCTCAGTTAAGTATTTCTTAAAAGATTGTTAAATATTCTTCTACACTGGAAACTTTTTCAAACCAACAATCTTTCCTTGCATGACAGTACTGTACATTCACATGCATATCAAGGAggatttcttttctctttttttatagtAAATATACCATCCAAGCACAATAAATAAGTAAAGGAGATGTATTTAAAGACACTGGAACTGCTTTATGGCTGATGTGTTGCTCTCAATCTCAATTTCCTCAATAAATCACTAGAAAACAG
>XM_039823196.1
GTCAAGTGGTGTCAgagcagaaaagaaaaagaagtgatGGCCATTACTCAAGACTGAGATTCCTGTTAAAAGGACATAGGTTTTGCACCCACTGGCTGCCTTGTGCTGGTCTCCACAGCTACCCACTTTTACGTCAGCAAGGGAAGCCAGTGTATTTCCTCCCCTTCTTTATCTAAAGGAAGTGCCAAAATAAGCATCAGCAGCGGAGCGCTCGAGCACCTTTTCCACTGGCCACTTAGTTGGGGTCCGAGGAAGAAGTCGGGAGGTTAACAACTGCAGAATCACCATGAAGACCATCGGGGTTCTTGTCCTCCTCCTGCTAGCATCTGTCCATGTCTTCACACAAGTTTTATCATCAGATCAGCAAAATTCGACGACAGTACCAGCAAGTAACCATACAATAACACCAActacagcagcaaaaacaacagcagcagcagcatcaaccTCAACAACATCACCAGCAGCCACATCAACAACCCAAAAGGTCTCAGCAGCaccaacagcaacagcaacaccaACACCaaaagcaacagcaacagcaacatcAGCAGCCCGTGTATCTCCCCCTGCTCTACCTGATGCCACCAGCAAAACTCCTGACACTCTAGAACATGAATCTTTGGACACACGCTCTAACCACTCTGAGTCAGGAAACCACTCTAAGACCCCAACTAATTCTGAAGAACGTGAAGCCGCTGAGAAACTAAACACAGGCAAAGGTCCAACTACTCCTGCCTCAGAACCGCATCAAACCACTGCACCCGCAGTGACGCAAACTCATCCGAATGAAAATGATAAAGGTGTTGGTCGTCATGCTGGCATTGATGAGAAATTCTCCCCCAAAGCAGACAAAAGGCTGTGGTGGATTGTGTTGCCTGCCCTCCTGGTTGGAGCTGCTGCAGCCATTGTGCTCAAATTCAAATGCAAGAAGATCCATGATCACACAGAAACCATTGATACTGGAACTGAGAACGCATCTTTCCAGAGCAGACCCGAAAGCACTAAAGATGGTGTCATGCTCCTCGGAGTGAAGTCATCAGACGGAGACAGGGCCTGCCAGATTGATTTTTGCGAGAATGTTGAacattaaatacttcatttcctgcattcagCTGCtgcgagataaaaaaaaataaataaaaaaagaagaagaagggcaGCAACATCAAGATCAGCCAGCGGATGAGTCACACCTGTCGCCCACACACGGACGGTCTGGAGGAACTGTTGTTTAGATGTTTGTGAATTCTGTGTAACATTTTGTGAGGCAGAAAAGTATGATGATGTATGCTAAAAGCTGTTTTGTTTGCAACTGTGATCATAAATCTCAGAGTAAGTGAACTTATTTTCAACCCAAATATTGAAAATAACAGGCTTAATACATTACAGGCTTAATACAGTACATCTCTTTGAATTGATATTGTGTCTGTGGAATATATTTAATGAACCTAGTCTATGCACCCTTTTTTTCAGTATACTGTTGACAAATAGACAAACCTAAGTACAGCTGCATAGCTCATCTCCATGTTGGGCCATTCTCTGTACAGTGCACTGACCTCAGATATTTATCACTGTTCATTTCATAGTTTTATAATTATCCTTTGGTTGTGTTGTTACTAGGGGTGTAAATCACAAGTTATGACGATACGATTTTAAATCGATTCTTTGGACAACGATATGATATTTGCTGATGTCACAAAGTCTGCCACGATAACATTATGATTTGATTCAATTCAGGGGCCTGCGATCGATATGAGCTGATATATCATATGTCCATTTAACACATTcagttacatttatattaaCTCAAAAAACGCAACTAAAATACGATTTGACAATTGTAATACTGAGCTTGtccagacatttaaatgaaaaacaaactattctttttaataaaaaataataaatataaagttggaattttaaaataaaatcaatattttcactttgtattgATATTGGATCGTTGCTCATTGAATCGATATATGGATCCAGATCGATGTATTATTACACCCCTAGTTGTTACTCACCTGCCTGGAACTATTTTGTAGATTGTGATGGTTTTCTTTTTGTGGGGCTTAATGGggaggtggggaggggggggggtataAGAACAGGTTCTTTTGTACTCATTTTTACTTTTCATGTATCTCAGTTAAGTATTTCTTAAAAGATTGTTAAATATTCTTCTACACTGGAAACTTTTTCAAACCAACAATCTTTCCTTGCATGACAGTACTGTACATTCACATGCATATCAAGGAggatttcttttctctttttttatagtAAATATACCATCCAAGCACAATAAATAAGTAAAGGAGATGTATTTAAAGACACTGGAACTGCTTTATGGCTGATGTGTTGCTCTCAATCTCAATTTCCTCAATAAATCACTAGAAAACAG
>XM_039823197.1
AAGTGGTGTCAgagcagaaaagaaaaagaagtgatGGCCATTACTCAAGACTGAGATTCCTGTTAAAAGGACATAGGTTTTGCACCCACTGGCTGCCTTGTGCTGGTCTCCACAGCTACCCACTTTTACGTCAGCAAGGGAAGCCAGTGTATTTCCTCCCCTTCTTTATCTAAAGGAAGTGCCAAAATAAGCATCAGCAGCGGAGCGCTCGAGCACCTTTTCCACTGGCCACTTAGTTGGGGTCCGAGGAAGAAGTCGGGAGGTTAACAACTGCAGAATCACCATGAAGACCATCGGGGTTCTTGTCCTCCTCCTGCTAGCATCTGTCCATGTCTTCACACAAGTTTTATCATCAGATCAGCAAAATTCGACGACAGTACCAGCAAGTAACCATACAATAACACCAActacagcagcaaaaacaacagcagcagcagcatcaaccTCAACAACATCACCAGCAGCCACATCAACAACCCAAAAGGTCTCAGCAGCaccaacagcaacagcaacaccaACACCaaaagcaacagcaacagcaacatcAGCAGCCCGTGTATCTCCCCCTGCTCTACCTGATGCCACCAGCAAAACTCCTGACACTCTAGAACATGAATCTTTGGACACACGCTCTAACCACTCTGAGTCAGGAAACCACTCTAAGACCCCAACTAATTCTGAAGCTCTAGAACATGAATCTTTGGACACACGCTCTAACCACTCTGAGTCAGGAAACCACTCTAAGACCCCAACTAATTCTGAAGAACGTGAAGCCGCTGAGAAACTAAACACAGGCAAAGGTCCAACTACTCCTGCCTCAGACAAAAGGCTGTGGTGGATTGTGTTGCCTGCCCTCCTGGTTGGAGCTGCTGCAGCCATTGTGCTCAAATTCAAATGCAAGAAGATCCATGATCACACAGAAACCATTGATACTGGAACTGAGAACGCATCTTTCCAGAGCAGACCCGAAAGCACTAAAGATGGTGTCATGCTCCTCGGAGTGAAGTCATCAGACGGAGACAGGGCCTGCCAGATTGATTTTTGCGAGAATGTTGAacattaaatacttcatttcctgcattcagCTGCtgcgagataaaaaaaaataaataaaaaaagaagaagaagggcaGCAACATCAAGATCAGCCAGCGGATGAGTCACACCTGTCGCCCACACACGGACGGTCTGGAGGAACTGTTGTTTAGATGTTTGTGAATTCTGTGTAACATTTTGTGAGGCAGAAAAGTATGATGATGTATGCTAAAAGCTGTTTTGTTTGCAACTGTGATCATAAATCTCAGAGTAAGTGAACTTATTTTCAACCCAAATATTGAAAATAACAGGCTTAATACATTACAGGCTTAATACAGTACATCTCTTTGAATTGATATTGTGTCTGTGGAATATATTTAATGAACCTAGTCTATGCACCCTTTTTTTCAGTATACTGTTGACAAATAGACAAACCTAAGTACAGCTGCATAGCTCATCTCCATGTTGGGCCATTCTCTGTACAGTGCACTGACCTCAGATATTTATCACTGTTCATTTCATAGTTTTATAATTATCCTTTGGTTGTGTTGTTACTAGGGGTGTAAATCACAAGTTATGACGATACGATTTTAAATCGATTCTTTGGACAACGATATGATATTTGCTGATGTCACAAAGTCTGCCACGATAACATTATGATTTGATTCAATTCAGGGGCCTGCGATCGATATGAGCTGATATATCATATGTCCATTTAACACATTcagttacatttatattaaCTCAAAAAACGCAACTAAAATACGATTTGACAATTGTAATACTGAGCTTGtccagacatttaaatgaaaaacaaactattctttttaataaaaaataataaatataaagttggaattttaaaataaaatcaatattttcactttgtattgATATTGGATCGTTGCTCATTGAATCGATATATGGATCCAGATCGATGTATTATTACACCCCTAGTTGTTACTCACCTGCCTGGAACTATTTTGTAGATTGTGATGGTTTTCTTTTTGTGGGGCTTAATGGggaggtggggaggggggggggtataAGAACAGGTTCTTTTGTACTCATTTTTACTTTTCATGTATCTCAGTTAAGTATTTCTTAAAAGATTGTTAAATATTCTTCTACACTGGAAACTTTTTCAAACCAACAATCTTTCCTTGCATGACAGTACTGTACATTCACATGCATATCAAGGAggatttcttttctctttttttatagtAAATATACCATCCAAGCACAATAAATAAGTAAAGGAGATGTATTTAAAGACACTGGAACTGCTTTATGGCTGATGTGTTGCTCTCAATCTCAATTTCCTCAATAAATCACTAGAAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823195.1 True 2491 mRNA 0.41 13 11977893 11991497
XM_039823196.1 False 2413 mRNA 0.40 12 11977893 11991500
XM_039823197.1 False 2383 mRNA 0.40 11 11977893 11991497

Neighbor

gene id symbol gene type direction distance location
LOC120573708 ddit4l,LOC103390244 coding downstream 4406 11970407 ~ 11973487 (-)
spag17 LOC104959999,LOC104962483 coding downstream 10121 11936610 ~ 11967772 (-)
trnag-gcc NA coding downstream 20494 11957329 ~ 11957399 (-)
LOC120573491 lrfn4,LOC103363228,LOC102311587 coding downstream 218034 11724497 ~ 11759859 (-)
trnam-cau_43 NA coding downstream 493337 11484485 ~ 11484556 (-)
LOC120572708 nfib coding upstream 140906 12132406 ~ 12198738 (-)
zdhhc21 zdhhc21 coding upstream 217072 12208572 ~ 12217427 (-)
plin2 plin2 coding upstream 299223 12290723 ~ 12294499 (-)
trnai-aau_26 NA coding upstream 419543 12411043 ~ 12411116 (-)
saxo2 NA coding upstream 426694 12418194 ~ 12421034 (-)
G142790 NA non-coding downstream 121539 11842267 ~ 11856354 (-)
G142766 LOC103363230 non-coding downstream 414961 11553786 ~ 11562932 (-)
G142758 slc3a2 non-coding downstream 438375 11490414 ~ 11539518 (-)
G142751 NA non-coding downstream 530382 11441681 ~ 11447511 (-)
LOC120573191 NA non-coding downstream 538057 11439304 ~ 11439836 (-)
G142846 NA non-coding upstream 231773 12223273 ~ 12224139 (-)
G142839 NA non-coding upstream 279335 12270835 ~ 12275611 (-)
G142868 NA non-coding upstream 290233 12281733 ~ 12287351 (-)
G142925 NA non-coding upstream 583037 12574537 ~ 12577019 (-)
G142952 sepsecs non-coding upstream 692219 12683719 ~ 12686501 (-)
LOC120573414 LOC104960590,LOC106514884,LOC103390236,LOC107084127,LOC106908847,LOC101464045,LOC100704366,LOC102310755,LOC102193047,LOC102788271,LOC103369314,LOC103129513 other downstream 42120 11910451 ~ 11935773 (-)
prox3 LOC104947722,LOC103363229 other downstream 510874 11455015 ~ 11467019 (-)
G142745 NA other downstream 533954 11441961 ~ 11443939 (-)
gpha2 gpha2 other downstream 823364 11149851 ~ 11154529 (-)
G142669 NA other downstream 833155 10930022 ~ 11144738 (-)
LOC120573137 ppp3ca,LOC103369319 other upstream 3414 11994914 ~ 12063426 (-)
G142916 NA other upstream 422254 12413754 ~ 12415155 (-)
rpl34 rpl34,LOC107566275 other upstream 607253 12598753 ~ 12602673 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other upstream 3095365 15086865 ~ 15121956 (-)
phf23b phf23 other upstream 3705599 15697099 ~ 15702094 (-)

Expression


Co-expression Network