taf6l (taf6l)


Basic Information

Item Value
gene id taf6l
gene name taf6l
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4650888 ~ 4663367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823199.1
ctttctcttttttacCAACTTGACACTTAAATGGGTGCCTAGCTATGGTGCCTAGTGTTTAGAGAGCAACGTTAGCTACGCTATGTAAACTTCCACTCCGGCTCTGATGATACACAGCCTTCATTCAAGCTAAGAAGTTTCTGAGTGGTCATCGTGATCATGGCGGACCGGGAGGAGCGCCGCTTCGCCGAGGTTTCCCGGGAGTCTGTCAAACTCATGGCCGAGAGTGCAGGCGTGGAGCTCGCCGACGATGTGGCTGCTCTGCTGGCTGAGGACGTGTGTTACCGGCTCAGGGAGGCAACGCAGAGCAGCTCTCAGTTCATGAGACATGCCAAGAGGAGGAAGCTGACAGTGGAGGACTTTAACAGAGCTCTGCGCTGGAGCAAGGTGGAGGCCATATGTGGCTACGGGGCCCAGGATGCTCTTCCTTTCCGCTCAGCGAAAGAAGGAGAGCTTTTCTTCATTGAGGATCGGGACATCAACCTGGTCGAGTTGGCTCTGGCCACCAACATTCCCAAGGGCTGTGCTGAGACCATGGTGCGAGTAAACGTGTCTTACCTGGATGGGAAGGGCAACCTGGAGCCTCAGGGGACAGTTCCCACAGCGGTGCAGTCTCTGTCAGATGACCTGTTGAAGTACTACCAGCAGATCACACGGGCCATCCTGGGAGAGGACCCCCACCTCATGAAGgtggCTCTGCTGGACCTCCAGTCCAACTCCAAGATTGCTGCCCTCCTGCCATACTTTGTTTATGTCATCAGTGGGGTGAAGTCAGTAAGCCATGACCTGGAGCAACTCAACAGGCTCCTCCACATGGTGAAGAGCCTGGTTCAGAACCCGTACCTGTACCTGGGCTCGTACGTGCGTAGCCTGGTCTCCAGCGTCATGTACTGCATCCTGGAGCCGCTGGCCGCCTCCATCAACCCGCTCAACGACCACTGGACCCTCAGGGACTACGCAGCCCTGCTCCTCAGCCACATCTTCTGGACTCATGGCGATCTGGTGAGTGGTCTGTACCATCAGATCTTGCTGTCGCTCCAGAAGGTTCTGTCTGACCCGGTGAGGCCGCTCTGCTCCCACTATGGAGCTGTGGTGGGGCTTCATGCTCTGGGATGGAAGgctgttGAGAGAGTGCTCTTCCCTCACCTCCCTGCGTACTGGGCCAACCTCCAGGCTGTGCTGGATGACTACTCCGTTTCCAACGCCCAGGTCAAAGCAGATGGACACAAGGTGTACGGAGCCATCCTGGTGGCAGTGGAGCGCCTGCTGAAGATGAaggctctgtctctgtctcagcCAGCGGAGGGGGGCTCCGGGGGTCAGCCGGGCTCTGTGGGGGGGGCTATGGGTTACAGGGTGAGCTCCCCTGGCCTCAGCCCCCCCCCTGAGCCTTTGTCGGAGGCCGCCCTGGGAATCGCCAGCCACCTTCAGGCGGGCGGGGCCGGCTGTCCCTGGGAGGAGTGGACCCCGGTCCCTCTGCCCGCCATGTACTGCGAGCTCTACTCCTTCTTCGGAGACAGCCTGGCGGTCCGGTTCAGTACCGGGCCCGGCTTCGGCAGCTTCCCTCCCTGCGCCCTGGCCCATTCCGATGGCGCCAGGAAGGAACCCCCCGGCCCTGCCTCCAACCCTGACACCACCCGAAAGATGCCTCAGCTGACTGCCAACCTCAACATCAGCCCCCGACAGGACGGGAGTCCACGCACCGATCCGCCCCCCCCCAGCCTGGCAGCTACCGGGTCAGGAAGGTCCCTGGCTCGCTCCTCCTCCGTGCAGCGCTCCAGATCTTCCTCGTCCCGTTCGGGCCAGCGTTCAGCCGGTCCGTCTCGGGACGTTTTCCCCAAAGCTCGCTTCACCTCTCCTCAGACGGGACTTCCCGTGTTCTCCTTCCTCATCGGCGGGCGGCAAATGGGTCGCCGTTGCCAAGGCCGCCGCCCCTTCCAGACCACTTTTGCCCCGACTCCACCCCTCTCTGCCGTCACACCGCGTGCCTACGCCCACAAACTGCCCGTCATCGGCAGGGTGGGAAAACCTGTGCGCCGCTGGGCGTGTTCCCATTACTCCCTTCACCTGCCTCTCTAGAGACTGCACTACTACACAGCAGGGTCCCACTGCTACAGACTCTACACACAGCAGTAAACACACAGTACACGCAGTTTGGACAcgcacaagcaaattaagacaaCGTTTCCCACTTTAACATCGCTTCATCGGGCAGCATTTTAGAAACAATTTCAGGAACTGCACtgcaaaagacagaaaatatgaAGCACTGcaagtagggctgggtgataatTCAATATGATAATTGATCGTCTTTCACTGGCATAATATCGTGATCAGGTCATAAATCGAGATCATGATATACAGTTGCGTAGTCTAAATTGATCATTTACAAGCACATAACTCAGTTTGACTCAGAAAGTCTGTTTGAAACATTTTGAGggaatatcatttgaagaattGCAGATCTGTTTTAACATCACACTATCTTTGTGCACGCATGTAAACACAGTTTAAAACAAACTATTTTTTCTCTATAATTTCTTATAGagatgatgattatttatctaaaattgtcagatttttctccatatcgcccagcccgaCCTGGAGGTCCCACGGACCAACAGAAGTTTCTGGGGGGAGACTGTTTACTTTGGTAAACTATGGTTTGTCAGCCGGTGTTGGCCAAATCCCCGACAATATTAGAGTAGTGCAATCAGAATGTGAGAATAAAACTTTATTAGGTCATTTTCCAACATCACTGACAAGTGGTCAGCAATAGTCAGTCGATAAGCCCACATGTCTAAGTtgcttgtgttttctgtatttatacactgtatttccccactggggatcaataaaggtgcatcttatcttatctta

Function

symbol description
taf6l Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of STAGA complex. Orthologous to human TAF6L (TATA-box binding protein associated factor 6 like).

NR:

description
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L

GO: NA

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823199.1 True 2886 mRNA 0.55 12 4650888 4663367

Neighbor

gene id symbol gene type direction distance location
cth1 LOC104936466,LOC104960793 coding upstream 1699 4646523 ~ 4649189 (+)
mta2 mta2 coding upstream 9236 4597032 ~ 4641652 (+)
eml3 eml3,LOC100700327,LOC101475149 coding upstream 56468 4528698 ~ 4594420 (+)
si:dkey-28a3.2 NA coding upstream 138924 4497448 ~ 4511964 (+)
rtn3 LOC103359706,LOC108242286 coding upstream 171601 4447409 ~ 4479287 (+)
kcnk7 NA coding downstream 1745 4665112 ~ 4670916 (+)
ehbp1l1a LOC103359697,LOC102197177,LOC101477091 coding downstream 21383 4684750 ~ 4734922 (+)
si:ch73-40a2.1 LOC106526363,LOC108229774,LOC104948109 coding downstream 79361 4742728 ~ 4771432 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295 coding downstream 108808 4772175 ~ 4784445 (+)
rce1a rce1,LOC103373256,LOC100695797 coding downstream 171315 4834682 ~ 4848171 (+)
G141084 NA non-coding upstream 157854 4492677 ~ 4493034 (+)
G141082 LOC103359705 non-coding upstream 160287 4489993 ~ 4490601 (+)
G141080 NA non-coding upstream 162361 4488281 ~ 4488527 (+)
G141079 NA non-coding upstream 162894 4487740 ~ 4487994 (+)
G141052 NA non-coding upstream 282551 4366561 ~ 4368337 (+)
G141169 NA non-coding downstream 115374 4778741 ~ 4826417 (+)
G141178 NA non-coding downstream 176040 4839407 ~ 4839638 (+)
G141166 NA non-coding downstream 189105 4852472 ~ 4855735 (+)
G141179 NA non-coding downstream 192436 4855803 ~ 4857185 (+)
G141211 NA non-coding downstream 252132 4915499 ~ 4915910 (+)
G141063 NA other upstream 163281 4483692 ~ 4487607 (+)
G141060 men1 other upstream 205941 4440638 ~ 4444947 (+)
zgc:112271 LOC103361642,LOC104959592,LOC100706616,LOC104935668 other upstream 335343 4313151 ~ 4315545 (+)
mllt3 mllt3 other upstream 1217085 3256513 ~ 3433803 (+)
ablim2 ablim2 other upstream 1696198 2828052 ~ 2954690 (+)
trnaw-cca_15 NA other downstream 1573636 6237003 ~ 6237074 (+)
drap1 drap1 other downstream 1908354 6571721 ~ 6578757 (+)
LOC120573071 map3k11 other downstream 1925584 6588951 ~ 6640245 (+)
LOC120573538 NA other downstream 3053237 7716604 ~ 7721656 (+)
LOC120572330 LOC107104736,LOC106920517,LOC103140598,LOC106947113 other downstream 3326831 7990198 ~ 7997708 (+)

Expression


Co-expression Network