slc1a1 (slc1a1)


Basic Information

Item Value
gene id slc1a1
gene name slc1a1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1550528 ~ 1574124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823242.1
cacacacacacacacacacacacactcgctcgcTGCCTCACACCATCGCTGGCTGGCCAGAAGCAGCGTCTGACGGCTGCATCCTTTGCTGTAGCAACACGGCTTCTCCATCCTCGTCTCTGCGTCGTCTGCACCTGACATCCTGACCGAGCGTCTGTTGTGTCTCCACAGGGGGCCATTGTGATTTCTCCTTTTTTTGGGGGttggaaaaaaatcaacaacaccACGGACATGATGGGTAACAAAGAACGACGAGGCGTGAATTTGAAAGGCTTGCTGAAGAGGAACTGGCTTCTGATTGCCACGGTTATATCAGTGCTGCTCGGGATCAGTTTGGGCGTCGTGGTCAGAGAGTATGCCTCCCTCTCCCATCTGGACAAGCAGTATTTTGGCTTCCCGGGAGAGATCCTCATGCGGATGCTGAAGCTTGTCATTCTCCCGCTCATCATCTCAAGCATGATAACAGGTGTTGCAGCCCTGGACTCCGAGGTTTCGGGAAAGATAGGCCTGCGAgctgttatttattatttctcaaCAACCATCATTGCGGTTATTCTTGGGATTATTTTGGTGATGACTATCAAACCGGGCGTCTCTCAGACAGCTGACCACATTGACAGAGCAGGGACCACGCCCAACGTCACAACAGTTGACACACTCTTGGACCTCGTCAGAAACATGTTCCCCGAAAATCTGGTGCAGGCTTGTTTTCAGCAATACAAGACCAAGCGCAAAGAGCTGGAGCCTCCGAAAGTTTCAGTCAACACCACCACAATTCCACCTCTCACAACTACTATCATGTCGGTGGTAGAGAACATAACAAAGGACTATCAAATCGTTGGGACATATTCTGATGGAATCAACGTATTGGGGCTCATTGTGTTCTGCGTTGCTTTTGGCCTCGTCATTGGGAAAATGGGCGAAAAGGGCCGTATCCTCCTGGAATTTTTTGATGCCCTGAATGAAGCGACCATGAAACTGGTCCAGATCATTATGTGctaCATGCCAGTAGGGATCCTGTTCCTAATTGCTGCTAAGATCATCGAGGTGGAAGACTGGGAGATCTTCAAGAAGATGGGTCTTTATATGGTGACGGTGCTGAGTGGTCTAGCTATCCACGCCACCATCTGTCTGCCACTGATCTTCTTTGTCATTGTGAGGAAGAACCCGTATACGTTTGCGTTGGGAATGGCTCAGGCCCTGGTGACAGCACTCATGATCTCATCCAGCTCGGCCACCCTGCCCATCACCTTCCGATGTGCGGAGGAGAACAATCGCATCGACAAGCGCATCACCCGTTTCGTCCTCCCAGTGGGCGCCACCATTAACATGGACGGGACGGCGCTCTATGAGGCGGTGGCTGCCATCTTCATCGCGCAGCTCAACGACTTCACTCTGGATGTGGGCCAAATTGTTACTATCAGTATAACAGCAACAGTTGCCAGTATTGGAGCTGCAGGAGTCCCTAATGCTGGCCTTGTCACCATGGTCATAGTCTTAACAGCTGTTGGATTACCTGCAAGTGATGTCACTCTGATAGTCGCTGTGGATTGGCTGCTGGACCGGTTCCGTACTATGATCAACGTCCTTGGCGATGCTTACGGAGCCGGTATCGTCCAGAAACTTTCCAAGAGGGAACTGGAGAGGATGGATCTGACATCAGACGTCGATGTTGCTAACCCCTTTGCTCTGGAAGCCAGTTTGGATGACGAAGAGTGCGAGAAGAAATCCTACGTCAACGGAGGCTTCACGGTCGACAAGACAGATGCCATCTCCTTTACCGAAACCTCTCAGTTTTAGCCTGTTGGTTGGTTCAGAGGAGCAGAGAAAGTGCCATGCTGCTATGGATGGAAAACGGAAAACCTTCCATCACGTGTTAGCTCCCTGACAAGAGTGGAAAACTATCCAACCAGACCCATCCTTAGACATCAGAAATCACACTATAGCAGCCTCCATTACGCTTATCCAAGATGATCACTCTTCATGTTGGACATTTACCATCACGACTAGATTAAAGTGCTTCCTTCTTACACTCAAATTGTGCCAAGATTAAAAAATGtcagttttctgtgtgtgtgtgtgtgcgtgcatgtgcatgtgcgtgtgcgtgtgtttgcgggtgtgtgtgtgtattttgcaaaaaataaattatcaaTTTAACAcaggtaaaaacaaaacaatacccAAATCCTACTTTATTTGCTCCTTCATTGGACAATAATTCTCTAAAATTTCTAAATGGTCTTTATTGAGTGGGTGTTGTTGAATGGCTATGCCCCCATAATGCACTGCTTGTATATCTTTGTCTGTATATTTAAACTGTGCCAAACATATAAAGAGGTTTTTCACCAAGTTGAA

Function

symbol description
slc1a1 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cerebellum; optic tectum; and telencephalon. Human ortholog(s) of this gene implicated in dicarboxylic aminoaciduria and schizophrenia 18. Orthologous to human SLC1A1 (solute carrier family 1 member 1).

NR:

description
PREDICTED: excitatory amino acid transporter 3 isoform X1

GO: NA

KEGG:

id description
K05612 SLC1A1, EAAT3; solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823242.1 True 2358 mRNA 0.48 12 1550528 1574124

Neighbor

gene id symbol gene type direction distance location
LOC120573289 NA coding downstream 50212 1492274 ~ 1500316 (-)
sorcs2 sorcs2 coding downstream 120811 1018258 ~ 1429717 (-)
LOC120573525 mrps28 coding downstream 636848 906545 ~ 913680 (-)
LOC120573590 NA coding downstream 943810 600634 ~ 606718 (-)
LOC120573587 NA coding downstream 1412291 135443 ~ 138237 (-)
LOC120573508 LOC103361692 coding upstream 86013 1660137 ~ 1664945 (-)
aco1 aco1 coding upstream 175395 1749519 ~ 1774918 (-)
LOC120573473 NA coding upstream 309778 1883902 ~ 1885687 (-)
LOC120572242 NA coding upstream 445488 2019612 ~ 2022367 (-)
pde5ab pde5a coding upstream 1104821 2678945 ~ 2797531 (-)
G140454 NA non-coding downstream 19578 1530235 ~ 1530950 (-)
G140451 NA non-coding downstream 28689 1519821 ~ 1521839 (-)
G140437 NA non-coding downstream 67823 1481738 ~ 1482705 (-)
G140418 grpel1,LOC102799061 non-coding downstream 71715 1468232 ~ 1478813 (-)
G140413 NA non-coding downstream 87663 1461638 ~ 1462865 (-)
G140492 NA non-coding upstream 88897 1663021 ~ 1663252 (-)
G140514 LOC106908230,LOC105925506,LOC101079287,LOC100690429 non-coding upstream 145801 1719925 ~ 1725333 (-)
LOC120573239 NA non-coding upstream 201713 1775837 ~ 1782596 (-)
G140534 NA non-coding upstream 213180 1787304 ~ 1788089 (-)
G140535 NA non-coding upstream 216586 1790710 ~ 1790942 (-)
tada2b tada2b other downstream 62102 1482789 ~ 1488426 (-)
G140274 NA other downstream 1098858 443550 ~ 451670 (-)
tspan5a LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072 other upstream 49135 1623259 ~ 1649432 (-)
LOC120573528 NA other upstream 353008 1927132 ~ 2032506 (-)
G140615 NA other upstream 477357 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 879942 2454066 ~ 2573483 (-)
arsj arsj other upstream 1023710 2597834 ~ 2622100 (-)

Expression


Co-expression Network