LOC120573491 (lrfn4,LOC103363228,LOC102311587)


Basic Information

Item Value
gene id LOC120573491
gene name lrfn4,LOC103363228,LOC102311587
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11724497 ~ 11759859 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823246.1
CCCCGCATTCCTCCCGCTGGCCCAACACAAGGAGAAACACCTGGGGCGAGATCTGTgctaaacactcacacacaaaaaaaaacacacacacaaacctggaTAACATGTGGAGCTGATTCGGATTATAGAGCCGCACAGACGGAAAAGGTCTGTGGATCGCCAGGCATTCTACCATGCCTGTCCCCCCACCCCTCAATCCCCGCAGAAAAAAGCACCTGCCCGACACACACCGCCACCCCGAACAAAGGGCAGAAGGTTCCACCTTCCCTTCCCtcttccctccatccatcctctctctttctcttctcccccctctcttcGTCTCATCTTTGACCTCCTCATCCCATCTCGTCCACTGCGCATGCCCCAGGGCCACGAAGAAAACCCGTCTCGACTCTGCCCCTTTCCCGGCGTTTCACTGGCTGGCTCTGGTCACATGCTGCCTGCTGCCTTCTCTGATTGGAGCAGGGGAGACGTGGGGCGTGGTCTCGGCCTGTCCCTTCCACTGCGTGTGTCGAAACCTTTCGGAGTCGCTCAGCACGCTCTGCGCCGACAAGGGCCTCCTGTTTGTCCCCCCGCACGTTGACCGCCGCACCGTGGAGCTGCGACTGGCTGACAACTTCATCACGGAAGTGGGCGGGATTGACTTTGTCAACATGACCGGATTGGTTGATTTGACTCTGTCGAGGAATACCATCCACCTGATCCGACCAATGACATTTGGTGACCTGGAGAGTTTGCGCTCGCTGCATCTGGATGGTGAGCCAAAAGAACTGGTTTCAGGTTTGGTCAATCTGCAACACCTGATCGTCAACAACAACCAGCTGGCTCAAATCTGGGAACCTGGGGCAGGGGAAGCTTGTTTGCTCACACTGGAAGACCTCGACATGTCCTACAATAACCTCAGGAGGGTGCCATGGGAGTCCATTCAGAAGATGGCCAGTCTGCACACTCTCAACCTGGACCATAACCTGATAGACCACATAGCGGAAGGTGTCTTTGGAGAGCTGTACAAGCTTGCAAGGCTGGATATGACGTCCAACAGGCTCCGGACCATGCCTCCTGATGCCCTATTTGCAAGGTCACAGACAGGTGCAATAAGCCCCACCCCCTACAATGCTGTCATAAGCTTAAATTTCGGTGGGAATCCTCTGCACTGCAATTGTGAACTGCTTTGGTTACGCCGGCTTATCCGTGGGGACGACATGGAGACGTGTGCCACACctccacacctggctggaaGatatTTCTGGTCGATTCCTGAGGAGGAGTTCACGTGTGAACCACCTCTCATCACCCGTCACACTCACAAGCTGTGGGTGCTGGAGGGCCAGCGAGCCACGCTAAAATGCCGTTCCATTGGCGACCCAGAGCCAGTAGTCCACTGGGTTTCACCAGATGACCGCATCATTGCCAATTCATCCCGGACCAGCTCCTTCAGCAATGGGACCTTGGATATGTTGGTAACCGTTGTCCGGGATGACGGGGCATACACATGCATCGCAATAAACGCAGCGGGCGAAGCAACTGCCACCGTGGACCTGAAAATAATCCCCCTGCCTCAGCGGGGCGGAGCAGGCGGAAACACAGGGAGTAACAACGTGAACACCAAAAACAACAGGAACGTGACAAATGGGATTTTACGGGCCGATCCGGGCTCCTCGGATATCAGCACAGGGAAAAACGGAGGGATTAACAACGGCGCAGGACGTGGAGGGGAGGTGGAGGATGGGAGGAGAGGTGGCGAGGACCATGAGGACGACAGTAGCAGGGCCTCGGAAGGGGAAAGGGCCGACGGAGGGAGCATGGAGGACGACGTGGGGGACGAGGAGGAAGAAAGGATGGTTGGAGTACAAGGGGTTACTTCAACCTCAGCTCAGGTCCGGTGGGATATGGGGCGCATGTCTGCCGCTTACGTTGTCTGGATGTATCAGATACAGTACAACTGCACCGCCGACGAGACCCTCATCTACAGAATTCTACCGCCGACCAGTGACCGTTTCCTGTTGAAGAACTTGGTTTCCGGTGTGGACTATAACCTGTGTGTGCTGGCCATTTTCGATGACACTATCACAACATTAGCAGCGACAAAAGTGCTGGGCTGCGCCACGTTCTCCACCAAGGATGTTTACCCAGCATGCCGCTCTCTCCAAGCCCATTTCCTGGGTGGTACACTGACCATATTGGTTGGCGGTGTTGTTGTCGTCACCCTGCTCGTGTTCACGGTGGCGCTCATGGTTCGCCACCGCGTTTGCAATCATGGCGACCACATGATATGTCACAACGGCAACACTGAAGCAGGAGGCGGGGCCTGCTGTCAGGGTGGATGTGGAGGGGGCGGGGACAAAGGGGGAAACAGTGGCGGGTGCTACCAATCAAATGGTTCCGGGGACATGATGATGGTGGTCCTGCCCAATGGTCTGCCGTCAAAACGAGGAGGGGAGACGGACAAGGAGAAGGAGAATGAGAAGGAAGACTCCGCTTCCTCTCTGCCTCCAAAACTCCCTCCAAAGCCCAGGCCAAAACCTAAAGTCAACCTGGAGCATTTTCTTTCAGCTGGGGGCGTAGTTTCCATGACGACAGGGGCAGTAGGTGAGATGGCATTGGTGGTGAGGCAAAGGAAGCTGGACAAGGCGCCGCCATACACCCCTGAAAGTGACAGAACTCCCCTCTACTACTCCCCTTCCCCTTCATCCACCCTGCCCCGTCAGTCACATTCCAGGGACCGCCCGAAACCCCGTCTGGAGCGAGAACTTACCAATCGTGCCAGTTTCTCTCTGGCTGCCCCCCTGAGAGACTCAGAGCTGTTGGACTGGAGAATCAGTCCCAGAAGCAGGGACAAATGGAACTCCTCACAGGCTTATCAGAGCCCTCTGTCGCCTCTAAGCCCCGTCTGCGGGACCGTTAGCAAACGACGGCACTCTCTGGATATGGGTTCCTCTGTTGCCCTGGCGACCGATGCTGCCACAACGGTTGCCAAGCGCTATGGTGCTGTCAATTACGCCAAGCGGCTGAGTGTGATCTGGACGAGGCGGAGCCAGTCTCTCCACGGAATGCTAGTGCAGTGCGCCTCGACGACGAGCACAACGTCTTCGACGACCAGCGATGAGGAGAGTGGCGGGGGCTTTGGGGCACGCTGCCAGTTTCAACAGGGATACATCCACGCTTACAACACCACCAACTCCAACTCTAACACTGGGATCAGTACTGGGAAAGCGAGCAGTGTAAAAGACAGGGGGAGGCAAACGGGGAAGGATGGAAAGAGTGCTGAAGAACTGGAGGAAAGTGTAGTGTAGGGGGTTgtggaatgtaaaaaaaaacaagttaagaGGGATAAAGGGTCTGTGAGGCAGTTTCCATGGGATCTTAAGTTTAGCAGGACAAAGAGGTGGAAGAGGGAGCAGGACAGGGGAGTTGAAGTGGTTGCAGATGAGGAGGGGAAGGTTGGACGAAGTAGTTTAGACGAAGGGAGAAGAGTAAAATTGACTCGAGTCTCACTTGTGCAGCTCCTTGATTTTCCCTGGGagaagtcaaaaaaaaaaagaaagggggggAAG

Function

symbol description
lrfn4 Predicted to be involved in regulation of postsynaptic density assembly; regulation of presynapse assembly; and synaptic membrane adhesion. Predicted to be located in plasma membrane. Predicted to be active in GABA-ergic synapse; cell surface; and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 4

GO: NA

KEGG:

id description
K16357 LRFN4, SALM3; leucine-rich repeat and fibronectin type-III domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823246.1 True 3557 mRNA 0.55 7 11724497 11759859

Neighbor

gene id symbol gene type direction distance location
trnam-cau_43 NA coding downstream 239941 11484485 ~ 11484556 (-)
snx15 snx15 coding downstream 242891 11474794 ~ 11481606 (-)
trnal-aag_9 NA coding downstream 246299 11478117 ~ 11478198 (-)
trnal-aag_8 NA coding downstream 249154 11475262 ~ 11475343 (-)
tmem179ba tmem179b coding downstream 271620 11445612 ~ 11452877 (-)
spag17 LOC104959999,LOC104962483 coding upstream 176751 11936610 ~ 11967772 (-)
trnag-gcc NA coding upstream 197470 11957329 ~ 11957399 (-)
LOC120573708 ddit4l,LOC103390244 coding upstream 210548 11970407 ~ 11973487 (-)
LOC120573457 LOC104966162 coding upstream 218034 11977893 ~ 11991500 (-)
LOC120572708 nfib coding upstream 372547 12132406 ~ 12198738 (-)
G142766 LOC103363230 non-coding downstream 161565 11553786 ~ 11562932 (-)
G142758 slc3a2 non-coding downstream 184979 11490414 ~ 11539518 (-)
G142751 NA non-coding downstream 276986 11441681 ~ 11447511 (-)
LOC120573191 NA non-coding downstream 284661 11439304 ~ 11439836 (-)
G142744 NA non-coding downstream 290650 11409918 ~ 11433847 (-)
G142790 NA non-coding upstream 82408 11842267 ~ 11856354 (-)
LOC120573458 NA non-coding upstream 225970 11985829 ~ 11986624 (-)
G142846 NA non-coding upstream 463414 12223273 ~ 12224139 (-)
G142839 NA non-coding upstream 510976 12270835 ~ 12275611 (-)
G142868 NA non-coding upstream 521874 12281733 ~ 12287351 (-)
prox3 LOC104947722,LOC103363229 other downstream 257478 11455015 ~ 11467019 (-)
G142745 NA other downstream 280558 11441961 ~ 11443939 (-)
gpha2 gpha2 other downstream 569968 11149851 ~ 11154529 (-)
G142669 NA other downstream 579759 10930022 ~ 11144738 (-)
si:dkey-183c6.7 LOC103364800,LOC108242893,LOC102223112,LOC106525003,LOC106907808,LOC106948277,LOC103480784,LOC103131169 other downstream 1066524 10631475 ~ 10657973 (-)
LOC120573414 LOC104960590,LOC106514884,LOC103390236,LOC107084127,LOC106908847,LOC101464045,LOC100704366,LOC102310755,LOC102193047,LOC102788271,LOC103369314,LOC103129513 other upstream 150592 11910451 ~ 11935773 (-)
LOC120573137 ppp3ca,LOC103369319 other upstream 235055 11994914 ~ 12063426 (-)
G142916 NA other upstream 653895 12413754 ~ 12415155 (-)
rpl34 rpl34,LOC107566275 other upstream 838894 12598753 ~ 12602673 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other upstream 3327006 15086865 ~ 15121956 (-)

Expression


Co-expression Network