si:dkey-6n21.12 (LOC102198682,LOC106632892,LOC104937153,LOC101478675)


Basic Information

Item Value
gene id si:dkey-6n21.12
gene name LOC102198682,LOC106632892,LOC104937153,LOC101478675
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5741321 ~ 5757820 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823386.1
GGCAGTGACAGGAAGTACCAGAGTTGAATTTCCCATTGCCAACTTTTTCCTGTGAGTTAAATTCCTGAAGTTTGTGTGTCCATTGTTTGTTCGTTAGGACCAAGAAAGAGTGGATATTTGGCATAATAATAGccccccaaaaacaaaaaaacaaaacaagagccGCCAAGACACCGTGTAAGTAAGTGCAGACTGACACGAATGAGACCCGAAGGGCTCTGGAGGTGGACATCGTTTTTCGCTTCTTTTTTGGCTGGTTGAAGCCAAGGCAGAGGGAGTGAAACTCCTGATGTAAAGGAAGGGAAGGTACGGGGGAAGATAACTAGGAGGAGTTGAGGAAGGAGCGGAGCTAACTAGCTGTTATGTGGCAAAACTCTCAACTACTTCTCCGACAACGAGAGCAGCAgagctgtgtttttatttgagaGAAAGTGCCCTGTagaagatggagggagagaaggagcgACAgcgggaggagaaggagagtaaCGAGGCAGAAGATGACAGGAGGAGTGATGAAGAGGCTGACAttgacgaggaggaggaggaggaggatgaagaagacTCGGAGGGCGCGGCGCTGATCTGGCAGGAGGGCTACGGCGAGGACAGTCTGGGCCTTCCCATCATGCACTGGGAGGCGCTGAGCCTGCGCATCGCCGAGCTGGAGAAGCAGGAAGAGGAGAATAAGGAGAAGAGGGCAAAGAGCGGAGTTTCTCTGGAGCGAGGCAGAGCTCCAGCGAGCTGGGccgaggacagagggaggagagccGAGAGCCGCGAGGACGGGGACGACGCCTGCAACAGCCACGTTCTGGCACTCACCTCCcgCCTGCAGACCCAGATGAATCTTCAGCTCTGCTTCATCAACGACAGTGAaagtgaagaggaggaggaggacgagaaGCAGGGAGAGATCAGCCAGAAGGAAAGCAGCAGCACATGGAGGGGGAGCGTTCAGGTCCATAAGAACCCTCCGCCTGCTGCCAAGCCGGAGAAACCCAAATCCAGAGGCTTTCGGAACACTCTGAGGAACCTCCGAGACCGGCTGAGAACAGACCACAAAGCACTGgCTGCAGCTCGTAGCGATCCTGTAGTCCAGAGACGGCACGTGGAGCGCAGTGATTTACAAAACTTCTGCATTAAGGACCTGAATGCTCTCTGCACGTCTCTCAGCCAGACCATCCAagACCTGAGCTCCGACCTGGTGGGCCGCCTGCAGGTGCGAGACCAGCTGAGGACGGAGCAGGACGCCATGCTGCTGGAGGTTCAAGACCTGACATCGCTGTGAGCCTGAGGTTCAGCCGTCGAGCCTGTGGCTCTGTCCCACACAACACTTGAACACGTGTCAAGTCTGTGAACATTGTCGTGAGTCAGACGGTGCCACAGTGGCCTCCACAAACATCTCAGTCAGTCCCTCCTGCTGTCGGGGCTGACCAGCCAATCACTGTGAAGACTGTCCCTCCCTGAAAAGGACCATGACATTCATTTGCATAGTATTTTTCAGTGttattgtctgtgttgtgtatttATAAGGGATAAGGGAAATGTTGTCTCACTAAAGGATAGTGTCCACCAGCAGGGGTGTAAAactggggcaaaaaaaaaaagggcaacaACTGAAACTGAGTTGGACACAACATCCAGGCAGTGGATGTTGGCCTTATAGGAACACGCCAGGGTTTCTCCCATTGTATTGCAGGCCTGGTGGTCCACCACCACCAGGCCTAAACCACTGGGGATCATTTTGTAAGGtattttaaagaatttttttaaactagttGCAGTGGGTTGCCGTAATCTTGATAttatgaacgtccgttacattcaagccattgccaaaagagttgctacaaagctaattaagactatcagctccacacaactctctctggatttctcagtatgacta

Function

NR:

description
PREDICTED: schwannomin-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823386.1 True 1912 mRNA 0.52 7 5741321 5757820

Neighbor

gene id symbol gene type direction distance location
si:dkey-6n21.13 LOC104944656,LOC104937154,LOC102297111 coding downstream 6139 5727636 ~ 5735182 (-)
rnaseka LOC101070669,LOC104937157,LOC103362101 coding downstream 56660 5678216 ~ 5684661 (-)
med11 med11,LOC102785859 coding downstream 121056 5616677 ~ 5620265 (-)
LOC120572332 NA coding downstream 318219 5418473 ~ 5423102 (-)
LOC120573316 acox3 coding downstream 405604 5319797 ~ 5335717 (-)
ache ache coding upstream 26988 5784808 ~ 5821779 (-)
LOC120573667 NA coding upstream 83597 5841417 ~ 5865750 (-)
LOC120573619 NA coding upstream 144104 5901924 ~ 5921871 (-)
snapc2 NA coding upstream 188212 5946032 ~ 5955060 (-)
trnal-aag_6 NA coding upstream 199231 5957051 ~ 5957132 (-)
G141416 NA non-coding downstream 29605 5711434 ~ 5711716 (-)
G141394 NA non-coding downstream 156795 5584162 ~ 5584526 (-)
G141259 NA non-coding downstream 532861 5208237 ~ 5208460 (-)
G141233 LOC104947167 non-coding downstream 663105 5077628 ~ 5078216 (-)
G141224 NA non-coding downstream 705124 5035502 ~ 5036197 (-)
G141467 NA non-coding upstream 212131 5969951 ~ 5970613 (-)
G141468 NA non-coding upstream 213115 5970935 ~ 5971387 (-)
G141470 NA non-coding upstream 232075 5989895 ~ 5992227 (-)
G141601 NA non-coding upstream 398232 6156052 ~ 6157413 (-)
G141612 NA non-coding upstream 507620 6265440 ~ 6266025 (-)
G141400 NA other downstream 140859 5596958 ~ 5600462 (-)
cd99l2 cd99l2 other downstream 158326 5560026 ~ 5582995 (-)
nat16 nat16 other downstream 266166 5424561 ~ 5475155 (-)
G141234 NA other downstream 641239 5099705 ~ 5100082 (-)
G141219 NA other downstream 781316 4958679 ~ 4960005 (-)
gal3st4 gal3st4,LOC104939968 other upstream 420101 6177921 ~ 6220260 (-)
LOC120572220 NA other upstream 464151 6221971 ~ 6231297 (-)
sox19b LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535 other upstream 551078 6308898 ~ 6315817 (-)
LOC120572256 NA other upstream 595644 6353464 ~ 6371100 (-)
tbc1d14 tbc1d14 other upstream 618152 6375972 ~ 6416457 (-)

Expression


Co-expression Network