LOC120573581 (LOC103480354,LOC103144605,LOC104935705,LOC104965865)


Basic Information

Item Value
gene id LOC120573581
gene name LOC103480354,LOC103144605,LOC104935705,LOC104965865
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19667699 ~ 19677622 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823388.1
CCGGTGCTGGATGtgtgcacacagagagagccGCTCAGCGGGGCTCCGCCACACAGCAGATGCGGAGCCGGGATGAGGAGCGTGTGTGTCGCTGCTTTTTGTGCGGCTTCGGTGTTTTCAATTTGAGATGCGATTTAACAACCAAAACAAACTGCGTTCACCGAAAAGGAAACCATTTGCACTCCGGTGGTAAATGAGCGTGGAGACTGTGGACAGATGAGAGTCGGGAGAAAGTGAATTTGGAGCTTTTGGAGGCACTTTTGttgctctgctctgctgctcGGCTCTTTGTGCTGCGGGTTGCAGCTTTTCCCTTTTGGATAGAAAGGCCTCCAAGATAGATTCCCTCAGGAGTAAAGTGGACTTGCTGCGCCTCCCTCTGGCCCTCTCCACCAAGTCCATCAGCAGTCGTAAGAGCCAGCTGGGCGTGGTCTGGGAGAAAGGCGGCGGCTCGGGGGCAGGAGGGGCCCGGAAACACCGCCCACCGCCGGCCTCCGACATGGACAACGAGTCGACGTACTCGGGCTACTCCTACAAGTCGTCCCACTCGCGAAGCTCCCGCAAACACAGGGACAGGAGGGACCGGCATCGCTCGAAGAGTCGCGACAGCACCATCCGCGGAGACAAATCAGTGACCATCCAGGCTCCTGGAGAGCCGCTGCTGGACGCAGAGTCCACCAGAGGAGACGACAGGGATGACAACTGGGGCGAGACCACCACGGTGGTCACTGGCACCTCCGTGGACAGCGTCTCCAACGAGGACCTGACACGCATGACGAAGGACCTTGAGGATTCTTCGCCGCTGGAGTGCCGGCGTTACCTCAGCCCAGCGTTGGGCGCCGTCCTGGGGCTCTTTGCTCTCATCACTCCTCTGGCCTTCTTGGCCCTCCCACAGCTCCTTTGGCGGGATGAACTGGCACCTTGCGGCACACCATGTGAGGGCCTTTACATTTCTCTGGCCTTCAAGCTCCTGATCCTCCTCATCTCCACCTGGACGCTGTTCCTGCGCccgcccagagccactctgccACGCTTCTTCATCTTCCGCTCTCTGCTGCTGGCATTGGTCTTCCTCTTCGTGGCGTCCTACTGGCTCTTTTACGGGGTGCGGGTGCTGGAGCCCAGAGAGACGGACTACAGGGGGATTGTGGGATATGCAGCGTCTCTGGTGGACGCACTGCTGTTCATTCAGTACCTGGCCCTGGTGCTGCTGGAGGTCCGACATCTGCAGCCCGCTTTCTGTCTAAAGGTTGTGAGGACTACAGACGGACATAGTCGCTTCTACAACGTGGGACATCTCAGTATTCAGAGGGCAGCAGTGTGGGTTCTGGACCAGTACTACAGTGACTTCCCAGTCTATAACCCTGCCCTACTCAACCTGCCCAAGTCCATCCTCTCCAAGAAGATGTCTGCTTTCAAGGTTTACAACTTGGGGGAAGAGAACAGCACCAATAACTCCACAGGTCAGTCCAGAACTATGATCGCAGCCGCTGCTCGGAGAAGAGACAATTCCCACACCGAGTACTACTACGAGGAGGCAGAAGTGGAGCGCAGGGTCCGCAAACGAAAGGCCAGACTGGTGGTGGCAGTAGAAGAAGCCTTCACCCACATCAAGCGTCACCAGGACGAAGAGGCGACCGCATCCTCCCCCAAACACCCGCGGGAGGTGATGGACCCCAGGGAGGCGGCCCAGGCCATATTCGCCCCCATGGCGCGGGCCATGCAGAAGTACCTCCGCGCCACCAGGCAGCAGTCCTACCACAGCATGGAGAGCATCATCAACCACCTGCAGTTctgcatcacacacaacatgacTCCCCAGgctTTCCTCGAGCGTTACCTGAGCCCAGGCCCCACCCTCCAGTACCTGGACACCAGCAGGGGGCGCCAGTGGACACTAGTGAGTGAGGAGCCGGTGACTTCTGCTCTCCATCAAGGCCAAGTCTTCTCCCTGAGACGCCTCGACTTCTCCCTGGTCGTCACGGTGACGCCCCTCCCCTTCCTGCGTTTGGGCGAAGAGTTCATCGACCCCAAAAGGCACAAGTTTGTCATGAAGCTCCAGTCAGAGACGTCCGTGTAGGACGAGGACGCTGAATCAAACATACTCATCTTAGTGCTTTCAGGGtatcttctttttatttttatgatacctttttagtttgttttcgtgatttttgttttgtttgttgatgaGCGTGACAcccaagaataaaaaaagaaaagacaacgtAATCTCAGACATTGTTACCCAAACAAACTTTATTAGACTCAAAGTGCCGACTGTTAACTTTTGATATTGCACTACAGACTGCTCCCAGTTCCCATGATACTGACGTATTCTTTGGGTTTCTTAGGGGCTTTTCAACACTCATTTAAGGAAATATATTGTTTTGATGAAAGAAAATTGATTCTTTGGTTGAAAGAATGACTACTTGTGTCTATCAGTTggattttagctttttttttattccagcaACATTTATTCAAGCAAATATACCCATGTAGGGTCTGTGTTAAAGTATTTCGAGTGTGCACTGACCTTTTTTAATGCACACTCTTTGTCAGAGCTAATCTTACttcccttttcccttttttactTGAACTTCTTGTTATCGAATTTGGCCTTTACAGGCTACAGACGGACAGAATCAGGTGATGACCCAATGGTCCCCTGGTCTTATCTCCCCTTTCGGACATTGAATGGTTTCACTGACTGAATCATTCCGTCCTCTTTTTGTTAACTGAAAAGTGGACATGCATACTGTACTTCCCACTGAAAGTCAGAAATAAGAAACACTGGATGGACTTCTAATGCACTGATCATTTCATCAGTGCATTGTTGTATTATTTCCCGCTCAGGTTTTATTGAATCACTTCTCATTTCTGGAGAAATTCACTCCTGCACTGAGAACTAATCTAACTTTCTGAGCATAATGTATGACCGGTTTATGTCCAGTGATACTGGTAACGAATGTTTTCTCCTCTACATATGAGGTTTGAATTGGACTTGATGAACTCAAGCACAATACAGCCAAGTACCGCCAATGTGTCTCTTTTTGGcagcttggtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgt

Function

NR:

description
PREDICTED: vang-like protein 2 isoform X2

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823388.1 True 3129 mRNA 0.52 8 19667699 19677622

Neighbor

gene id symbol gene type direction distance location
LOC120572523 NA coding downstream 79622 19587130 ~ 19588077 (-)
LOC120572473 NA coding downstream 113858 19529160 ~ 19553841 (-)
LOC120572474 NA coding downstream 143709 19512028 ~ 19523990 (-)
pnp5a pnp,LOC103368940 coding downstream 261341 19403481 ~ 19406358 (-)
sf3b2 sf3b2 coding downstream 298064 19357363 ~ 19369635 (-)
arhgef11 arhgef11 coding upstream 1633 19679255 ~ 19702223 (-)
LOC120572266 NA coding upstream 202718 19880340 ~ 19894923 (-)
cbln11 NA coding upstream 387174 20064796 ~ 20070624 (-)
LOC120572528 NA coding upstream 403119 20080741 ~ 20085137 (-)
si:ch211-63p21.1 LOC103371025,LOC102193822,LOC102788031,LOC101475184,LOC100709095 coding upstream 409825 20087447 ~ 20093439 (-)
G144585 NA non-coding downstream 202 19666458 ~ 19667497 (-)
LOC120572478 NA non-coding downstream 121276 19544171 ~ 19546423 (-)
G144476 NA non-coding downstream 432175 19234321 ~ 19235524 (-)
G144425 NA non-coding downstream 566862 19100428 ~ 19100837 (-)
G144424 NA non-coding downstream 567469 19099980 ~ 19100230 (-)
G144735 NA non-coding upstream 39362 19716984 ~ 19815341 (-)
LOC120573676 NA non-coding upstream 61736 19739358 ~ 19742781 (-)
LOC120573678 NA non-coding upstream 68883 19746505 ~ 19746825 (-)
LOC120573677 NA non-coding upstream 77598 19755220 ~ 19755722 (-)
G144776 LOC104967121 non-coding upstream 200052 19877674 ~ 19879627 (-)
si:cabz01074946.1 NA other downstream 1907 19657083 ~ 19665792 (-)
LOC120572670 NA other downstream 314393 19282933 ~ 19353306 (-)
prkd4 LOC103376196 other downstream 401346 19247950 ~ 19266353 (-)
clcn3 clcn3 other downstream 610917 18962866 ~ 19056782 (-)
G144258 NA other downstream 1070468 18595102 ~ 18597231 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other upstream 99058 19776680 ~ 19797530 (-)
LOC120573300 slc12a6 other upstream 1149661 20827283 ~ 20863889 (-)
nop10 NA other upstream 1187135 20864757 ~ 20867106 (-)
LOC120573168 LOC103355779 other upstream 1228833 20906455 ~ 20929559 (-)
si:dkey-172j4.3 LOC102306481,LOC103363024,LOC100708735,LOC101468909,LOC102781820,LOC101073787,LOC108246481,LOC106609052 other upstream 1673620 21351242 ~ 21438456 (-)

Expression


Co-expression Network