snapc2


Basic Information

Item Value
gene id snapc2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5946032 ~ 5955060 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823468.1
GGAAGACGAATTGTTGTTGTTAGCGGCTGAACGCAGGCGGGCTGTGAAAGTTATCTCTGCGAGGAAGCACGTCTTTTAAACCAAGTTCAACGTTCAAATGGACGTTTACATCCAGCGAGTAACGGCCACGGCTCTCTGAGCTTGCACGAGACGAACACGCTCGAGTTTGTCTCGTGAATCTTTCGGTCTAGTCTGGTAACGTACGTTCGGTTTGTTTAGTATCGGTGACGTGAGTCGAGATGAAGCCGCCTCCTCGGAAACGAACTAAAATAGATCGCACCCTCGCATACAGCACCCTGTCTCCCGAACCTTCTAGTAAACAAAAGGCCAGCAGACAGTGGAAGATGGCCGAACAGAGGAGTCTCCTGACGGCACTGAAAAGACTCAGCGGGAAAACCCAGGGCCACGAAGACATCGACTATGATTTCCTGAGAAACCACGTGAAAACTCGGTCCATTTCGGAGATGCAATCTGTGGTGGAATATCTGAAGAACAAAGTGATCTCAATGGCGAGCCAAATGCTAAAGGAGAAGAGGTTGGAGGAGAAGGTCCGAAAGCCCATCGAGGTGTGGACACACATGGCTTCTACTGTAACTGGAAGCCTCGAAGAACCCATTTCCACTGCATTCTCTCAGATGCTGATCGTGTCGTCCACAGAGCCTTGCACCCTGAGGAACTGTGACCCTCCCCAAGTCTACAGACCACCCACAAACAAAGAGGGGCCTGTTAGTCGCACCATCACTCCTAGACCAATGACTAGGTTGCCAGTCAAAGCTGAGCGTCCTAACGCCAACGCAGCCCGTCCTCTCATGGTTATCAAGACCCCGGCACCAGCCATGGGCCCAGCCAAAAGACTCCCAGCACCCTCCCAAGTGGTGAGAGTGCCAAACAGCAACATCCCTCCACCGAAGCAACGGCTTCCTGCCACAGCTGGAAGCTCGCCTGCTGCTGCCGCCACCTCCCCCTCTCAGACTGCAGCCTCCGCCTGCCCGCCGGGTGCGGCAGCATCACTCGCTGTGCCTCCTACATCTCTACAATCGTCCTCACAGACTGTGACTCCACTTACAGTTACAGGACCAGTCCCACCCAGTTCTGGCTCTGCAGCAGTGGTAAAGACTCCGAGTGTTAGCAGCTCTCTAATCAGGACTACCCAGCAGCCCGCGGAGCGACACCCCACCCCCATCTCCACCGCCTCCACGTCAAACTCCCTCTCCTCCACCAACGCCACCAGCCAAACTCCAGTCCCCAGTACCGCAGCGTCCTCTGGTGCCTCCTCCACGCCCCCACTCTCCACCACCGCCGCGGCCTTGTACGCCCGCTTCGGTCGCACCAGCAAGTACAACACGACGGACACGCCGAGGGTGTTAGGCGTCAAGAGCGTAGTGGACTTTGAGAggatctattactacctgagtCAAATCCACCAGCCGAACGACAAGTGTCATCTCACCCCCATGGAGAGCGCTATAGTGCTGGACCTGTTGATGTCTCTCCCAGAGGAGCTTCGCCTGCTGAACTGCAACAAGCTGCACACACATCTGACCCAGGTGTACCAATTCCTCTCATCCCCCGCTGACTCCAAGATGGCGCGAGAAATGTTTAAAGAGCGGAAGGATGGAGTCTGTGCTCAGACAGGGACACCGAGCGGTCCAAACTGTCAGCAGAGCCCTGCTGGGGCTGCTGACAGCGGCGATGTCACAGACAGTGGAGGGAAGAAACTGCAGCCAGAGGAATCTGAGAGCCAATCAGCAGGAAGCAGTAACCCATCAGGACATTTGGGGAATGCAGAAAAGATGGGACCCTGCCCCCCCCTCAACCCATTTATGGTGCCACTGAAACTGTTGAGACGCAAATAGGTCACGttcaaaaatgtataaaaacaaatgtgcaatGGTTTGTTCAGTATGCTTTAGTTATGTCTACAttctataataatacattatctTTACACTCATTTTAGAGTTTTAAAGTATTTGGTCATTGTTTGTCTCAGAGGTTCCAAGGCTGGGCATCGAACCAGAATCTGGAGTATGGGATGTCTGGTCACTCTGATTCATCGCCTCATTTATACTTATTCTTTGATGAGGTAGGTTCTATTTAAATCAGAATATTATCTATTTGAGacatttcagttttatttatgcAACGTTGTTGTTCAGCTGCTTTTGTTAAGACGACATTAAACACTGATGCATTGAGAAGTTTGGCTTATTTtcttaaaagaaagaaaaagctttttttgtACAGGGGAACTAAAGATTATTGTATTATTGATTGATCTGcatattattttctttattaatcATTTGGATaataaaatgtcaggaaaaaaagtgaaaaatg

Function

NR:

description
snRNA-activating protein complex subunit 2

GO: NA

KEGG:

id description
K15209 SNAPC2; snRNA-activating protein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823468.1 True 2343 mRNA 0.50 7 5946032 5955060

Neighbor

gene id symbol gene type direction distance location
LOC120573619 NA coding downstream 24161 5901924 ~ 5921871 (-)
LOC120573667 NA coding downstream 80282 5841417 ~ 5865750 (-)
ache ache coding downstream 124253 5784808 ~ 5821779 (-)
si:dkey-6n21.12 LOC102198682,LOC106632892,LOC104937153,LOC101478675 coding downstream 188212 5741321 ~ 5757820 (-)
si:dkey-6n21.13 LOC104944656,LOC104937154,LOC102297111 coding downstream 210850 5727636 ~ 5735182 (-)
trnal-aag_6 NA coding upstream 1991 5957051 ~ 5957132 (-)
vgf NA coding upstream 4380 5959440 ~ 5967428 (-)
serpine1 serpine1 coding upstream 43058 5998118 ~ 6005218 (-)
trnas-uga_22 NA coding upstream 73781 6028841 ~ 6028922 (-)
trappc14 LOC104941436 coding upstream 203798 6158858 ~ 6185624 (-)
G141416 NA non-coding downstream 234316 5711434 ~ 5711716 (-)
G141394 NA non-coding downstream 361506 5584162 ~ 5584526 (-)
G141259 NA non-coding downstream 737572 5208237 ~ 5208460 (-)
G141233 LOC104947167 non-coding downstream 867816 5077628 ~ 5078216 (-)
G141224 NA non-coding downstream 909835 5035502 ~ 5036197 (-)
G141467 NA non-coding upstream 14891 5969951 ~ 5970613 (-)
G141468 NA non-coding upstream 15875 5970935 ~ 5971387 (-)
G141470 NA non-coding upstream 34835 5989895 ~ 5992227 (-)
G141601 NA non-coding upstream 200992 6156052 ~ 6157413 (-)
G141612 NA non-coding upstream 310380 6265440 ~ 6266025 (-)
G141439 NA other downstream 102886 5743559 ~ 5843146 (-)
G141400 NA other downstream 345570 5596958 ~ 5600462 (-)
cd99l2 cd99l2 other downstream 363037 5560026 ~ 5582995 (-)
nat16 nat16 other downstream 470877 5424561 ~ 5475155 (-)
G141234 NA other downstream 845950 5099705 ~ 5100082 (-)
gal3st4 gal3st4,LOC104939968 other upstream 222861 6177921 ~ 6220260 (-)
LOC120572220 NA other upstream 266911 6221971 ~ 6231297 (-)
sox19b LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535 other upstream 353838 6308898 ~ 6315817 (-)
LOC120572256 NA other upstream 398404 6353464 ~ 6371100 (-)
tbc1d14 tbc1d14 other upstream 420912 6375972 ~ 6416457 (-)

Expression


Co-expression Network