LOC120572478


Basic Information

Item Value
gene id LOC120572478
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 19544171 ~ 19546423 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641453.1
GCACCAGAGCCCTGCTACAGACCACATGACCAACCAGGTGGAAGCTCAATATGCTTCTCTTCTCAATGGTGATGCTTGTCTCTATGAAACAATCAAAGGCCCTGAAGAACCTGAACATGGGAGGAATAAAGAACCAGAGGACAGCCTTTACTCCAATGTGACGATAGGATCAGCTGCAGATCAATAAAGACATCTGAGGACAAAACAAATGGAATTGGTGACAATTTATATGACCACTACCCTCCTGAGAACCaaggaaaataatttttttcctaATCATATTTTTTGTGATTCCATATCTGTTTaaggttaaaaaagaaaacatcctACAATTTACAcattttgatttttatttatttacagcatgTCCACTGTAGTGGACAACAGGATCATTTGAGTACGAAAACAGACACATTTGTTGGATGTGGAgtcattatttacatgaagatAGTCCTGATGTCCACTATAATTAACATTCATAAAATGGCAAATTTTTCAAAAGATACATAATGTAGTTGCTATCAGAACTCAATATATGATTCCTAACACCTTAATGAACAAGAAAATATATGATTATAACAAAACCATAGACAAACAAGATTTGACTCATCTCTTATCTTTCCATAAAATGTGCTTGTTCCTATGCCGTCCATTTTGGATTGAAAGATAGAGGCGGTTCCCGGGAATTAAGAGATTTGCACAAAAGATTCCAAGGAGAGGAATGAAACTCAAATGTCCACTACAGTGGACATAAGTCAATGGGCTGGATCTCAGCAGGCagtatttgcaacttaaataaAAAGTGTGATTATTGTGTGCACCTCTGCTATTACATAGTATTTTGTACAGTTGACCTAATAGCAGATAATTGAAAGGAAATACATCATATGGCTGTAATCTTTTGTTGTAATTGGTGAAAGGACTACAGAGTTTTACATATGATAATGATATACCAACTTGTATCAGGTCTCTCCACACCCGTATTCCAGCAGGTTCAGAGGAAGCTTCtttcatactattcatcctgcacatagtaattcttactactcttataatgttaccacactgcacatagttgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641453.1 True 1081 lncRNA 0.36 4 19544171 19546423

Neighbor

gene id symbol gene type direction distance location
LOC120572474 NA coding downstream 20181 19512028 ~ 19523990 (-)
pnp5a pnp,LOC103368940 coding downstream 137813 19403481 ~ 19406358 (-)
sf3b2 sf3b2 coding downstream 174536 19357363 ~ 19369635 (-)
klc2 klc2,LOC102775952 coding downstream 262715 19266453 ~ 19281456 (-)
gal3st3 gal3st3 coding downstream 358380 19155032 ~ 19185791 (-)
LOC120572523 NA coding upstream 40707 19587130 ~ 19588077 (-)
LOC120573581 LOC103480354,LOC103144605,LOC104935705,LOC104965865 coding upstream 121276 19667699 ~ 19677622 (-)
arhgef11 arhgef11 coding upstream 132832 19679255 ~ 19702223 (-)
LOC120572266 NA coding upstream 333917 19880340 ~ 19894923 (-)
cbln11 NA coding upstream 518373 20064796 ~ 20070624 (-)
G144476 NA non-coding downstream 308647 19234321 ~ 19235524 (-)
G144425 NA non-coding downstream 443334 19100428 ~ 19100837 (-)
G144424 NA non-coding downstream 443941 19099980 ~ 19100230 (-)
G144423 NA non-coding downstream 444974 19098894 ~ 19099197 (-)
G144422 NA non-coding downstream 445331 19098582 ~ 19098840 (-)
G144585 NA non-coding upstream 120035 19666458 ~ 19667497 (-)
G144735 NA non-coding upstream 170561 19716984 ~ 19815341 (-)
LOC120573676 NA non-coding upstream 192935 19739358 ~ 19742781 (-)
LOC120573678 NA non-coding upstream 200082 19746505 ~ 19746825 (-)
LOC120573677 NA non-coding upstream 208797 19755220 ~ 19755722 (-)
LOC120572670 NA other downstream 190865 19282933 ~ 19353306 (-)
prkd4 LOC103376196 other downstream 277818 19247950 ~ 19266353 (-)
clcn3 clcn3 other downstream 487389 18962866 ~ 19056782 (-)
G144258 NA other downstream 946940 18595102 ~ 18597231 (-)
c14h4orf48 cunh4orf48,lg24h4orf48,lg3h4orf48,c18h4orf48,LOC102785068 other downstream 1004548 18536143 ~ 18539623 (-)
si:cabz01074946.1 NA other upstream 110660 19657083 ~ 19665792 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other upstream 230257 19776680 ~ 19797530 (-)
LOC120573300 slc12a6 other upstream 1280860 20827283 ~ 20863889 (-)
nop10 NA other upstream 1318334 20864757 ~ 20867106 (-)
LOC120573168 LOC103355779 other upstream 1360032 20906455 ~ 20929559 (-)

Expression


Co-expression Network