LOC120573415


Basic Information

Item Value
gene id LOC120573415
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 17682075 ~ 17684953 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641722.1
AGCTGCTCTGTTACGCTGGCTCCAGGTGGTATAATCATGTACACCCCCTACATTTGgcACCTGGGGTGTCATGATGGTGTTCACCTTCGTGAGAACTATGGGATGGACATACTGGCATATTTGATATGGCAGACGTCATAGGCTACTGGATCATAGGAAGCCAGCATCGCACCTGCCGCCCTTCCACATTTTCCTGTTAAGCTCCAGATACAAGACAGGAGGTGTCTGGATCGTCAGTGATGGTTACCAGCACATTTGGCAAAAAAGATGTTTATTGAGATTTTCCAGTTTTTGCACTTCAAAAGCTTCCTGCCCATCTTCCTCAAAACGCCCCACCACCTCATTGTCCTTGGCATGAGGTGGgtggtttgacatttggtggcaGTGGTGGGATTTTTTTCGTCTCTGAGGCTGGAGAACCTGAAGAAGCTAAGTCGCTCCAACAGCGTGAAGAAGACCATGCAAAGCGACCAAGGGGCCATGGAGGACAGCAGCCATTCCAAGATTTGAAGACAGAGATGatattaaacaatatttaaCATTT
>XR_005641723.1
AGCTGCTCTGTTACGCTGGCTCCAGGTGGTATAATCATGTACACCCCCTACATTTGgcACCTGGGGTGTCATGATGGTGTTCACCTTCGTGAGAACTATGGGATGGACATACTGGCATATTTGATATGGCAGACGTCATAGGCTACTGGATCATAGGAAGCCAGCATCGCACCTGCCGCCCTTCCACATTTTCCTGTTAAGCTCCAGTTTTTGCACTTCAAAAGCTTCCTGCCCATCTTCCTCAAAACGCCCCACCACCTCATTGTCCTTGGCATGAGGTGGgtggtttgacatttggtggcaGTGGTGGGATTTTTTTCGTCTCTGAGGCTGGAGAACCTGAAGAAGCTAAGTCGCTCCAACAGCGTGAAGAAGACCATGCAAAGCGACCAAGGGGCCATGGAGGACAGCAGCCATTCCAAGATTTGAAGACAGAGATGatattaaacaatatttaaCATTT
>XR_005641724.1
atttagcattttgtgtTGGGTTTTCCCTTTCGTCATGGAGAAATCCCTTTAGAGTACCAACTCCATCAAGTGGCTGCTCAGCTCAATGTCCGCTACTTCTCAACAGAAACTTTATTTCCATTGTGTTATTGgcACCTGGGGTGTCATGATGGTGTTCACCTTCGTGAGAACTATGGGATGGACATACTGGCATATTTGATATGGCAGACGTCATAGGCTACTGGATCATAGGAAGCCAGCATCGCACCTGCCGCCCTTCCACATTTTCCTGTTAAGCTCCAGATACAAGACAGGAGGTGTCTGGATCGTCAGTGATGGTTACCAGCACATTTGGCAAAAAAGATGTTTATTGAGATTTTCCAGTTTTTGCACTTCAAAAGCTTCCTGCCCATCTTCCTCAAAACGCCCCACCACCTCATTGTCCTTGGCATGAGGTGGgtggtttgacatttggtggcaGTGGTGGGATTTTTTTCGTCTCTGAGGCTGGAGAACCTGAAGAAGCTAAGTCGCTCCAACAGCGTGAAGAAGACCATGCAAAGCGACCAAGGGGCCATGGAGGACAGCAGCCATTCCAAGATTTGAAGACAGAGATGatattaaacaatatttaaCATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641722.1 False 544 lncRNA 0.47 4 17682075 17684953
XR_005641723.1 False 463 lncRNA 0.49 3 17682075 17684953
XR_005641724.1 True 619 lncRNA 0.46 4 17682075 17684861

Neighbor

gene id symbol gene type direction distance location
pcdh7b pcdh7,LOC102786590 coding downstream 456543 17119707 ~ 17225532 (-)
dthd1 NA coding downstream 1119949 16549965 ~ 16562126 (-)
zgc:194930 NA coding downstream 1288600 16370017 ~ 16393475 (-)
LOC120573527 NA coding downstream 1362583 16316592 ~ 16319492 (-)
per1b per1 coding downstream 1371576 16294156 ~ 16310499 (-)
stim2b stim2,LOC106964335 coding upstream 2121 17687074 ~ 17730399 (-)
si:dkey-19b23.8 LOC103361359,LOC104965567 coding upstream 179878 17864831 ~ 17870686 (-)
chd3 chd3 coding upstream 221147 17906100 ~ 17949657 (-)
dnajc3b LOC103361354,LOC104927603,LOC100712384,LOC101476475 coding upstream 271828 17956781 ~ 17966143 (-)
cldn15a cldn15 coding upstream 281825 17966778 ~ 17971356 (-)
G143852 NA non-coding downstream 434442 17247376 ~ 17247633 (-)
G143837 NA non-coding downstream 713905 16967952 ~ 16968170 (-)
G143836 NA non-coding downstream 718343 16963489 ~ 16963732 (-)
LOC120572320 NA non-coding downstream 836031 16803547 ~ 16846044 (-)
G143812 NA non-coding downstream 982848 16694709 ~ 16699227 (-)
G143898 NA non-coding upstream 77427 17762380 ~ 17763705 (-)
G144013 NA non-coding upstream 202325 17887278 ~ 17889652 (-)
LOC120572704 NA non-coding upstream 307192 17992145 ~ 18002471 (-)
G144037 NA non-coding upstream 331296 18016249 ~ 18019306 (-)
LOC120573605 NA non-coding upstream 563490 18248443 ~ 18250057 (-)
LOC120572513 NA other downstream 432443 17230599 ~ 17249632 (-)
LOC120572710 nwd2 other downstream 1227147 16397933 ~ 16454928 (-)
acap1 acap1 other downstream 1638756 16019657 ~ 16043319 (-)
phf23b phf23 other downstream 1979981 15697099 ~ 15702094 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other downstream 2560119 15086865 ~ 15121956 (-)
tbc1d19 tbc1d19 other upstream 49379 17734332 ~ 17753015 (-)
rbpjb rbpj,LOC106534282 other upstream 79233 17764186 ~ 17821078 (-)
smim20 NA other upstream 167418 17852371 ~ 17853837 (-)
LOC120573700 LOC100692994,LOC102197104,LOC102799729,LOC101170466 other upstream 288946 17973899 ~ 18080804 (-)
G144058 NA other upstream 428899 18113852 ~ 18123690 (-)

Expression


Co-expression Network