trnar-ucu_16


Basic Information

Item Value
gene id trnar-ucu_16
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 15354247 ~ 15354335 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_699
GGCTCCGTGGCGCAATGGATAGCGCATTGGACTTCTAAttcaaaggttgtgggttcgagtcCCACCGGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_699 True 73 tRNA 0.56 2 15354247 15354335

Neighbor

gene id symbol gene type direction distance location
LOC120573430 LOC104952638,LOC104923974 coding downstream 610 15338869 ~ 15353637 (-)
LOC120572506 LOC104952638,LOC104923974 coding downstream 16027 15335090 ~ 15338220 (-)
LOC120573428 LOC100691766,LOC101464677,LOC102785851,LOC102193527,LOC104952637 coding downstream 21584 15327456 ~ 15332663 (-)
LOC120572736 LOC107094197,LOC101175051,LOC106520906,LOC106931240 coding downstream 110299 15234234 ~ 15243948 (-)
LOC120572502 LOC102788115,LOC101471575,LOC102294957 coding downstream 127296 15216695 ~ 15226951 (-)
LOC120572694 cpz coding upstream 257371 15611706 ~ 15620641 (-)
LOC120572190 gpr78,LOC102198312,LOC100693923,LOC104952649,LOC103358009 coding upstream 268968 15623303 ~ 15628703 (-)
trmt44 trmt44 coding upstream 294076 15648411 ~ 15664148 (-)
LOC120573214 plscr3 coding upstream 325910 15680245 ~ 15690181 (-)
LOC120573228 eif5a coding upstream 378733 15733068 ~ 15742231 (-)
G143348 NA non-coding downstream 19459 15333883 ~ 15334788 (-)
G143344 NA non-coding downstream 37460 15313965 ~ 15316787 (-)
G143317 NA non-coding downstream 67849 15276713 ~ 15286398 (-)
G143292 NA non-coding downstream 162086 15189996 ~ 15192161 (-)
G143281 NA non-coding downstream 272217 15079305 ~ 15082030 (-)
G143356 LOC100690702,LOC103375269,LOC102194098,LOC101464393,LOC102785273 non-coding upstream 9260 15363595 ~ 15365593 (-)
G143357 NA non-coding upstream 12447 15366782 ~ 15367391 (-)
G143364 NA non-coding upstream 36410 15390745 ~ 15391085 (-)
G143365 msantd1,LOC102784318 non-coding upstream 36900 15391235 ~ 15391491 (-)
LOC120572697 NA non-coding upstream 238759 15593094 ~ 15605222 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other downstream 232291 15086865 ~ 15121956 (-)
rpl34 rpl34,LOC107566275 other downstream 2751574 12598753 ~ 12602673 (-)
G142916 NA other downstream 2939092 12413754 ~ 12415155 (-)
LOC120573137 ppp3ca,LOC103369319 other downstream 3290821 11994914 ~ 12063426 (-)
LOC120573414 LOC104960590,LOC106514884,LOC103390236,LOC107084127,LOC106908847,LOC101464045,LOC100704366,LOC102310755,LOC102193047,LOC102788271,LOC103369314,LOC103129513 other downstream 3418474 11910451 ~ 11935773 (-)
phf23b phf23 other upstream 342764 15697099 ~ 15702094 (-)
acap1 acap1 other upstream 665322 16019657 ~ 16043319 (-)
LOC120572710 nwd2 other upstream 1043598 16397933 ~ 16454928 (-)
LOC120572513 NA other upstream 1876264 17230599 ~ 17249632 (-)
tbc1d19 tbc1d19 other upstream 2379997 17734332 ~ 17753015 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-7 NA coding NC_048583.1 CM023237.2 19995660 ~ 19995751 (+)
eurasian perch (Perca fluviatilis) trnan-guu_34 NA coding NC_053133.1 CM020930.1 1640863 ~ 1640936 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucu_20 NA coding NC_047622.1 CM018568.1 5427360 ~ 5427452 (-)
tiger barb (Puntius tetrazona) trnar-ucu_8 NA misc NC_056705.1 CM032074.1 4284409 ~ 4284499 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_20 NA coding NW_019172695.1 APWO02002293.1 5428 ~ 5517 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_44 NA coding NW_019172941.1 APWO02000150.1 804814 ~ 804904 (-)