G150594 (cnn1)


Basic Information

Item Value
gene id G150594
gene name cnn1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 515749 ~ 518674 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU203830
tatctatctatctatctatctatctatctatctatctatctatctatctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtatatctctgtgtgtgtgtgtgtgtgtgtatatctgtgtgtgtgtgtgtgtgtctctgtgtgtttgtgtgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtatatctgtgtgtgtgtgtgtgtgtgtatatctctgtgtgtttgtgtgtgtgtgtgtgtgtatatctgtgtgtgtgtgtgtgtgtgtctctgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgactgtgtgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtgtatatctctgtgtgtttgtgtgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtatatctctgtgtgtttgtgtgtgtgtgtgtgtgtatatctgtgtgtgtgtgtgtgtgtgtctctgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgtgtgtgtgtgtctctgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgtgtgtgtcctcaCCATGCCAGCCAGAGCCATGAGCGTGGACTGGACCTGCGTGTGGTTGGCGTTCTCAAACAGGTCGTTGGCCTCGAAGATGTCCGGTAGCCTCAGGCCGTACTCGGTGATCGCCCGGACAAAGTTGCCGATGTTCTCCAGCTGGTGCCAGTTCTGGCTCGAGCGGTTGATCTTCTTCACCGAGCCGGGCTGGAGCACATTAATGAGTCTACGGAGAGAGGGATGTAATGGGAGAAAGGTCATGTTGAGTTGACTATAAAGGGATGTTTCTGTCTGGACAGAAAAGGTAATGTTGCGGACATCGATGGAGAATGACTGCATAAGAGAAGGGACTCCCAGACACGCTCGCCCAGATGTGTCCTGatttcttgttgttttgttatCCTGCTATAGCAAAAGATATTTCCTGGTTTCATCCTTAGCAAACAGGATGCTGTTCCTCTGCAACATACACTCTCTTCTTTCTGTGCTACTTTGAGATCTCTTCCACTGTACTCTGATACTGTGTAACTCCATCTCCTTGCAAGCAATAATACATTTGAACAAACTATCACAGGACAACCTGTCTCTGTTTGAAACTTCTTTATTGCCCAGTCTGTTGACGGAAATCTTCCACCACAGGGACACCAAACAACAGCCAATCAGTGGTCAGATtacagcaggggtcttcaacgtgttttaaaccaaggaccccttaactgaaatgagatcagggaccccctactacatatattgtataacatGAAGGtgcatattaatctggtcctacaTTAACTTATATGGGAGCCTAAAGCATTTATAGATACCTGTTTTTGCAtaaaatactaagctattcaaatagcctgatatgttttaatgttaacccttaaatgtgaaacagtcaatcctttgggatgaactgtatctgtggatatttgctaataacatgttggaatcatgttaagagattaaaatttttgaaaaacactttcaaaaattaacaataatttggaggcctgTGAGGACCTTTGTCTTTGGAGTGACTGTGAGGACCCCctgggggtcccggaccccctgttgaagatccctgtaTTACAGAAACTTGTATACTACTGCGGCGTCTCTGAGCTAGGGTGACCAGACTATGTCCCGGGACAGTGCCCGGTTTCGGTGACCTGTCCTCGGCTGGAGCTGTCCCACGGAAATGTGACTTGACTGAAATTGGAATGAAATAgtgtaatgggaaaaattacatttaagcataattccttatattttcatgttttatttctactttaattctctcacattatTGAAAGTTTCTGCTTAACTGctgagacgtccagtctggaacatgatgtgagcactgttagcctgaacagatagggggctacaaggtcaccctaaaaacTAGCTCTAGTTGTCCCATGCcagttaaccctcatgccctcttcggtcacttttgtacatttttctcaagttttatttttcattttgtgatcatttttgctgttacctcttatggcatgaaattttgtaggaatccttcttttcagtcaatttttttaaatccagtgttttttactcttacatgtctgttatacttaaatgattcattttgtaccctctggacaccttcgaggcattaaatcatcatatatcaatattgttttctgctttttttttcatgaatcacttaagataactggggggtgaaagtcgtacagggaggaggaggtgagatgactccaagatgtctcttgtatttctccgagatgtcttcatgtgtatcagattgcctgtataAGAATTGTAGcatcataataatccaagtgtgtgtgtgtgctgtcactctgaagatgcatataagcctggtgttctgttcactcatttgagaaactgactccacactgggctgcggccttttgtgaaatcatgttgctcctatatttgcaaatatatcttttaataaaatacaaaaacccaacttgg

Function

symbol description
cnn1 Predicted to enable actin binding activity. Involved in negative regulation of vascular associated smooth muscle cell proliferation. Located in cytoskeleton.

NR:

description
PREDICTED: calponin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203830 True 2799 lncRNA 0.43 3 515749 518674

Neighbor

gene id symbol gene type direction distance location
LOC120573973 NA coding downstream 172177 328685 ~ 343572 (-)
LOC120574215 NA coding downstream 212633 282291 ~ 303116 (-)
LOC120574946 NA coding downstream 281837 227045 ~ 233912 (-)
swsap1 NA coding upstream 165812 684486 ~ 690905 (-)
LOC120573830 LOC104949076,LOC102775949 coding upstream 592244 1110918 ~ 1166720 (-)
tlcd3ba LOC103374918 coding upstream 699155 1217829 ~ 1242261 (-)
LOC120573837 NA coding upstream 733430 1252104 ~ 1253365 (-)
nlk1 nlk,LOC104935892,LOC100700355,LOC107394986,LOC103393459,LOC101063351 coding upstream 737085 1255759 ~ 1291070 (-)
G150524 NA non-coding downstream 52680 448230 ~ 463069 (-)
G150574 NA non-coding downstream 135466 379854 ~ 380283 (-)
G150562 NA non-coding downstream 199865 312550 ~ 315884 (-)
G150492 NA non-coding downstream 283933 230765 ~ 231816 (-)
G150542 NA non-coding downstream 313585 200690 ~ 202164 (-)
G150597 NA non-coding upstream 1056 519730 ~ 521199 (-)
G150512 cnn1 non-coding upstream 7297 525971 ~ 582648 (-)
LOC120574134 NA non-coding upstream 12992 531666 ~ 533073 (-)
G150509 NA non-coding upstream 12994 531668 ~ 533825 (-)
G150602 NA non-coding upstream 20322 538996 ~ 539699 (-)
G150554 NA other downstream 254831 260536 ~ 260918 (-)
G150487 NA other downstream 326330 148618 ~ 189419 (-)
LOC120573816 NA other downstream 378632 133910 ~ 137117 (-)
elof1 NA other upstream 14858 533532 ~ 538148 (-)
G150530 NA other upstream 149003 667677 ~ 689117 (-)
G150519 NA other upstream 218047 736721 ~ 738729 (-)
G150515 NA other upstream 503362 1022036 ~ 1023562 (-)
sh2b1 LOC102305267,LOC103374915 other upstream 634755 1153429 ~ 1213566 (-)

Expression


Co-expression Network