LOC120574287 (col1,LOC108233705,LOC103393603,LOC106536191)


Basic Information

Item Value
gene id LOC120574287
gene name col1,LOC108233705,LOC103393603,LOC106536191
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1606215 ~ 1620471 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU204266
GGTACTGATGGACAGCCTGGTGCTAAGGGAGAGAGTGGAGATAATGTTGCTAAGGGAGATGCTGGTTCCTCTGGCCCTGCTGGACCCACTGGTGCCCCTGGACCTCAGGGTCCCGTTGGAAACACCGGCCCTACGGGAGCCCGCGGAGCTGCTGGACCACCTGGACCTGCTGGTgagagaggagagcagggaCCTTCCAGAGCTCCTGGATTCCAGGAACAACCAGGACCCCAGGGTGCTGTTGGTGAGAGTGGCAAGCGCAGAGAGCAGGGTGTGCCTGGGGAGGCTGGAGCCACAGGACCTGCTGGAGCTAGAG
>XM_039824588.1
ATGCGTGTGTCTCACGCCCAATGCGGTGCCCCTGGTGGTCGTGGTTTCCCTGGTTCTGATGGCGCTGCTGGACCCAAAGGTGCCACTGGCGAGCGCGGTGCCCCCGGTCTTGTTGGACCTAAAGGTTCTACCGGTGAGCCTGGTTTGCCCGGAGCTAAGGGTATGACTGGTAGCCCTGGACCTGATGGCAAGATGGGACCTGCTGGAGCCGCTGGACAAGATGGCCGCCCCGGACCCCCTGGCACCGATGGAGCAAGAGGCCTGCCTGGAGTCATGGGATTCCACGGACCCAAGGGAGCTGCTGGTGACGCTGGAAAACCTGGCGAGAGAGGGGTGATGGGACCCACCGGCCCTGCTGGTGCCCCCGGAAAGGACAGTGACGTTGGTGCTCAAGGCCCCTCTGGACCTGCTGGACCTGCTGGTgagagaggagagcagggaCCTTCCAGAGCTCCTGGATTCCAGGAACAACCAGGACCCCAGGGTGCTGTTGGTGAGAGTGGCAAGCGCAGAGAGCAGGGTGTGCCTGGGGAGGCTGGAGCCACAGGACCTGCTGGAGCTAGAGGTGCCTGTGGATCCCCTGGAGCTGCTGGAAACGATGGTGCTAAGGGAGATGCTGGAGCCCCCGGAGACAAGGGAGAGACCGATGCCGCCGGACCTGTCGGACCTGCCGGATCTCGCGGAGCCCCTGGTGAGCGCGGAGAGTCTGGACCCCCTGGACCTGCTGGATTCGCCGGACCTCCTGGTACTGATGGACAGCCTGGTGCTAAGGGAGAGAGTGGAGATAATGTTGCTAAGGGAGATGCTGGTTCCTCTGGCCCTGCTGGACCCACTGGTGCCCCTGGACCTCAGGGTCCCGTTGGAAACACCGGCCCTACGGGAGCCCGCGGAGCTGCTGGACCACCTGGACCTGCTGGTgagagaggagagcagggaCCTTCCAGAGCTCCTGGATTCCAGGAACAACCAGGACCCCAGGGTGCTGTTGGTGAGAGTGGCAAGCGCAGAGAGCAGGGTGTGCCTGGGGAGGCTGGAGCCACAGGACCTGCTGGAGCTAGAGGTGCCTGTGGATCCCCTGGAGCTGCTGGAAACGATGGTGCTAAGGGAGATGCTGGAGCCCCGGAGACAAGGGAGAGACCGATGCCCCGCGGCCCTGCCGGACCTGCCGGATCTCGCGGAGCCCCTGTGAGGTGA

Function

NR:

description
PREDICTED: collagen alpha-1(I) chain-like isoform X1

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204266 False 316 TUCP 0.63 4 1608688 1620471
XM_039824588.1 True 1194 mRNA 0.64 19 1606215 1618054

Neighbor

gene id symbol gene type direction distance location
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding downstream 62805 1520386 ~ 1543410 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding downstream 97103 1500772 ~ 1509112 (-)
LOC120575499 NA coding downstream 160892 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 209747 1392492 ~ 1396468 (-)
taok2a LOC103363962 coding downstream 222487 1341826 ~ 1383728 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 203 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 384405 2004876 ~ 2058639 (-)
ilf3b ilf3,LOC102795819 coding upstream 544249 2164720 ~ 2209257 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding upstream 594123 2214594 ~ 2224968 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding upstream 734971 2355442 ~ 2433220 (-)
G150855 NA non-coding downstream 16907 1588768 ~ 1589308 (-)
G150776 NA non-coding downstream 85936 1519958 ~ 1520279 (-)
G150775 NA non-coding downstream 86309 1519690 ~ 1519906 (-)
G150765 NA non-coding downstream 117901 1485602 ~ 1488314 (-)
G150764 NA non-coding downstream 124242 1481743 ~ 1481973 (-)
G150865 NA non-coding upstream 19008 1639479 ~ 1639851 (-)
G150869 NA non-coding upstream 65006 1685477 ~ 1686203 (-)
G150862 NA non-coding upstream 78391 1698862 ~ 1736283 (-)
G150860 NA non-coding upstream 103229 1723700 ~ 1738851 (-)
G150992 NA non-coding upstream 288945 1909416 ~ 2072683 (-)
LOC120575421 LOC106675350 other downstream 140907 1461342 ~ 1465308 (-)
LOC120575422 LOC106675350 other downstream 145234 1456747 ~ 1460981 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 284182 1302340 ~ 1322033 (-)
G150705 NA other downstream 366225 1238242 ~ 1239990 (-)
G150694 NA other downstream 432192 1170045 ~ 1174023 (-)
G150856 NA other upstream 103651 1724122 ~ 1739481 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other upstream 195594 1816065 ~ 1822128 (-)
LOC120573864 NA other upstream 225269 1845740 ~ 1872092 (-)
farsa farsa other upstream 512261 2132732 ~ 2161724 (-)
G151146 NA other upstream 779338 2399809 ~ 2805411 (-)

Expression


Co-expression Network