XLOC_004844 (nog3)


Basic Information

Item Value
gene id XLOC_004844
gene name nog3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 32388860 ~ 32390444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009565
GGCAACAGACTCACAATTGAGAATGGGTCTTTGGGTTGCATCGCGACCCGCGAGGATAAATCAGTCGAGCCAGGTGATTCTCAGTTCGGCGGCCACTAGAAAGCATGCGGATCCTCAGAGAGCACGAGGAGCCCGCGAGCTCACACAGGAGACCGGCTCTGGCTGAAGCCGCCTGATGCTGTCATGAGGAACCTGTGCGTAAAAGCGGAACGAGACGCAAGACTTGTTGGATTTGCGAGCGCATTTACGCACCTCGGATAAGCGAATAAACACTTTGGCGCGAGCGCTCACGGCTCGCCAAAAAACTTAAGCGAACACTCAAGATGGATAACATACCGTATTTCCTGGCCACCGTGCTCATTTTCTCCATCGGGTTCAGGATAGAAGAGGGCATGTGCCAACACTACTACCTCCTCCGTCCCATTCCAAGCGACAGCCTGCCCATAGTGGAACTCAAGGAGGACCCGGATCCCGTACTGGACCCTAAAGAGCGGGATCTGAACGAGACCGAACTCAGAGCCATTCTAGGCAGTCACTTCGAGCAGAACTTCATGTCCATCAATCCTCCAGAGGACAAGCACGCGGGACAGGACGAGCTGAACGAGTCGGAGCTCATGAAACAGCGTCCCAATGGCATCATGCCCAAAGAGATCAAAGCCATGGAGTTTGATATCCAGCACGGGAAGAAACACAAGCCCAGCAAGAAGCTCAGAAGACGGCTTCAGCTGTGGCTCTGGTCCTACACCTTCTGTCCGGTGGTGCACACATGGCAGGACTTGGGGAACCGATTCTGGCCCCGTTATTTGAAAGTGGGCAGCTGCTACAATAAACGCTCTTGTTCGGTTCCAGAAGGGATGGTTTGCAAACCTGCCAAATCCAGCCATTTGACGGTTTTGCGATGGAGGTGCGTGCAGAGAAAGGGTGGACTCAAATGCGCCTGGATACCCGTTCAGTACCCCGTGATATCAGAGTGCAAATGCTCTTGCCCGAACTGAAATAAGCTCCGCACTCATCCTCACATGCACTGCCCCGTGTAGGAATGTATATTTGATGTATATGTGGTGCCATATTAGGTTACACTTTACATTGGTGTTCATGTTACTGTGTAATTTCATACAGAAGTACTGACAGAACTTTGCGTACTTAACATGTGATTCTTGTCTCTCTTGTTTTGTGGAGCTGCTTGCTATTATAGTCATTATAGTAAATAATTAGAGTAATAACATGgacactgtaaaatgtaaagtGTGGTGCCTGATTCATTTGTAAAAAGAACTAAAAGGTCAGTATTTGCCTATAATATCCAGTGTCTACTGTAACTTTGGTTGTAATGTAACTTTATACATATTTATGTCGAAGAACATTTCGCATTCAAAGTGCGTTTATTGAAGGAGTTCCAAGCTTTTTCCATTAttcggaaaaaaaaatactttatacaCCTCAGACAGGAGAATATAGATTACAGTCTTGGTGTGCTGTAAATATAAGGGGAATGGAAAATAACTGCTCATGTAAATTAAAAGAAactatttattctttatgttCATGTAgtcaaaatgcatttaaaataaaccaCTAAAAATGg

Function

symbol description
nog3 Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; negative regulation of BMP signaling pathway; and urogenital system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cartilage element; fin; head; and otic vesicle. Human ortholog(s) of this gene implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Orthologous to human NOG (noggin).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0007275 multicellular organism development biological_process
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990714-8 Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; negative regulation of BMP signaling pathway; and urogenital system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cartilage element; fin; head; and otic vesicle. Human ortholog(s) of this gene implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Orthologous to human NOG (noggin).

Ensembl:

ensembl_id ENSDARG00000053528

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009565 True 1585 mRNA 0.46 1 32388860 32390444

Neighbor

gene id symbol gene type direction distance location
XLOC_004843 ANKFN1 coding upstream 14704 32292564 ~ 32374156 (+)
XLOC_004842 si:ch211-277e21.1 coding upstream 123691 32199651 ~ 32265169 (+)
XLOC_004841 NA coding upstream 202293 32170468 ~ 32186567 (+)
XLOC_004840 hlfb coding upstream 223633 32159272 ~ 32165227 (+)
XLOC_004839 stxbp4 coding upstream 242879 32073660 ~ 32145981 (+)
XLOC_004845 CT573006.2 coding downstream 11640 32402084 ~ 32416844 (+)
XLOC_004846 NA coding downstream 41170 32431614 ~ 32526346 (+)
XLOC_004847 rbfox3a coding downstream 339026 32729470 ~ 33251465 (+)
XLOC_004848 BX936416.1 coding downstream 561338 32951782 ~ 32951896 (+)
XLOC_004849 csnk1db coding downstream 930060 33320504 ~ 33336787 (+)
XLOC_004837 dre-mir-2196 non-coding upstream 471808 31916943 ~ 31917052 (+)
XLOC_004836 CR450698.1 non-coding upstream 570255 31795031 ~ 31818605 (+)
XLOC_004830 NA non-coding upstream 757563 31608889 ~ 31631297 (+)
XLOC_004829 NA non-coding upstream 785345 31583376 ~ 31603515 (+)
XLOC_004850 NA non-coding downstream 949771 33340215 ~ 33343285 (+)
XLOC_004854 NA non-coding downstream 1205458 33595902 ~ 33606588 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location