farsa (farsa)


Basic Information

Item Value
gene id farsa
gene name farsa
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2132732 ~ 2161724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU204533
CCGGTCTCTTTCGTGCTTCGCAGGGATCGAGCATGGCGGACGCCGGTGTGGCGGAGACGCTCCTACGGCGGATTGAGAAGGCGGACGGCGGTGTGGACAGCCTCGACGTGGCGAGCAGCCTCGGGCTGGACCACCAGGTCGTCGTCGGGGCCGTGAAGAGTCTGCAGGCCCTCGGAGACTTAATCTCAGCCGAGCAGCGCTCCTCCAAACACTGGGAGCTGTCGGAGGAGGGCACGGAGATAGCCGAGCAGGGCAGCCATGAGGCTCGGGTGTTCGGCTCCATCCCGCTGGACGGTCTGGCTCAGAGTGAGCTCATGAAACTGTCCTTTGGGAAGATCGGCTTCAGCAAGGCGATGTCCAACAAGTGGATCAGGCTGGACAAGACGCACGAGGGCGGCCCCAGGATATTCAGGACTGTGGAGAGCATACAGGACCAAG
>XM_039824602.1
ATCCGGTCTCTTTCGTGCTTCGCAGGGATCGAGCATGGCGGACGCCGGTGTGGCGGAGACGCTCCTACGGCGGATTGAGAAGGCGGACGGCGGTGTGGACAGCCTCGACGTGGCGAGCAGCCTCGGGCTGGACCACCAGGTCGTCGTCGGGGCCGTGAAGAGTCTGCAGGCCCTCGGAGACTTAATCTCAGCCGAGCAGCGCTCCTCCAAACACTGGGAGCTGTCGGAGGAGGGCACGGAGATAGCCGAGCAGGGCAGCCATGAGGCTCGGGTGTTCGGCTCCATCCCGCTGGACGGTCTGGCTCAGAGTGAGCTCATGAAACTGTCCTTTGGGAAGATCGGCTTCAGCAAGGCGATGTCCAACAAGTGGATCAGGCTGGACAAGACGCACGAGGGCGGCCCCAGGATATTCAGGACTGTGGAGAGCATACAGGACCAAGAAAAAAACTGTTTTGGAGTGATTCTTGTGTCTGTGTTCAGGACGGTGAAGTCGTACTGGATCACTAAGGGCCCCTCCTTCAGCACCACCATCACCAAACAGGAGACAGAGCTCACTCCAGACATGATTGCCAATGGCAGCTGGAAAGAGAAGAAGTTTAAGCCGTACAACTTTGAGGCGATGGGCGTGGCCCCAGACTGCGGCCATCTGCACCCGCTGATGAAAGTGCGAACGCAGTTCAGGCAGATCTTCCTCGAGATGGGCTTCTCAGAGATGCCGACCAACAACTTCATCGAGAGCTCTTTCTGGAACTTCGACTCGCTGTTCCAGCCGCAGCAGCACCCGGCCAGAGACGCACACGACACCTTCTTCCTGTCCGACCCAGCTCTCGCCCACGAGTTCCCGCAGGACTACCTGGAGAGAGTGAAGAAGGTCCACTCAGAGGGAGGCTTTGGCTCACAAGGGTACAAATATGACTGGAAGATAGAGGAGGCTCAGAAGAACATCCTCCGCACTCACACTACGGCAGTCAGCGCACGCATGCTGTATAAACTGGCTCAACAGGAGAAGTTCACCCCCGTCAAGTATTTCTCCATCGACCGGGTGTTCAGGAACGAGACGCTGGACGCCACCCACCTGGCCGAGTTCCACCAGATCGAGGGCGTGGTGGCCGACTACGGCCTCACGCTGGGAGACCTGATCGGCATCCTGTACCAGTTCTTCACTAAACTAGGAATTACCAAACTCCGCTTCAAGCCTGCCTACAACCCGTACACCGAGCCCAGCATGGAGGTGTTCAGCTACCACGAAGGACTCCAAAAGTGGGTGGAGGTGGGAAACTCTGGGGTCTTCAGACCAGAGATGCTGCTGCCCATGGGTCTCCCCGAGGACGTGTCTGTGATCGCCTGGGGGCTGTCTCTGGAAAGGCCCACCATGATTAAATACGGCATCAACAACATCCGAGAGCTGGTGGGACACAAAGTCAACCTGCAGATGGTCTACGACAGCCCCATGTGTCGACTGGAGTCCTGAAGTTCACCCACCGTTtatccttattattattattagtattattatttagaATTGGACCCACCTTTCCTTTAGCTGGGACAACTCCTTTCTACGCCTCCCTCTCCTGCTGAGCTCGACCAGTAAAACCAGTTGGAAGGCGACCGATGCAGAAAGACTTGAGACAGACTTCTTCAAAGGGCTTTTACACACAGGAGCAGCCTTTTTATATGAACTTAATATTCCAAAACATCATGCAAATCTTACCTTTGTTACATACTAAGAAGAGTTTGTTGCACCCCGCTACTGCAGGAAATATCTGACTTCTGTTATGTGACAGAGGTTCAATAAAAATGCTTCTTTGTTCCCAAATA

Function

symbol description
farsa Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be part of phenylalanine-tRNA ligase complex. Predicted to be active in cytosol. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha).

NR:

description
PREDICTED: phenylalanine--tRNA ligase alpha subunit

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
TU204533 False 438 TUCP 0.63 4 2155596 2161722
XM_039824602.1 True 1821 mRNA 0.54 13 2132732 2161724

Neighbor

gene id symbol gene type direction distance location
LOC120574768 LOC103358687,LOC104930242 coding downstream 74093 2004876 ~ 2058639 (-)
LOC120574288 LOC108233705,LOC103393603 coding downstream 485663 1620674 ~ 1647069 (-)
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding downstream 589322 1520386 ~ 1543410 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding downstream 623620 1500772 ~ 1509112 (-)
LOC120575499 NA coding downstream 687409 1429165 ~ 1445323 (-)
ilf3b ilf3,LOC102795819 coding upstream 2996 2164720 ~ 2209257 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding upstream 52870 2214594 ~ 2224968 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding upstream 193718 2355442 ~ 2433220 (-)
pglyrp6 NA coding upstream 276378 2438102 ~ 2450469 (-)
LOC120574080 gfi1,LOC102083319,LOC102796239,LOC103376798,LOC101077887 coding upstream 576211 2737935 ~ 2750253 (-)
G151026 NA non-coding downstream 3880 2127150 ~ 2128852 (-)
G151024 gcdh,LOC107718595,LOC107563244 non-coding downstream 12824 2113932 ~ 2119908 (-)
G151008 NA non-coding downstream 59948 2008932 ~ 2072784 (-)
G150992 NA non-coding downstream 60049 1909416 ~ 2072683 (-)
G151005 NA non-coding downstream 65086 2066706 ~ 2067646 (-)
G151030 NA non-coding upstream 48795 2210519 ~ 2212318 (-)
G151031 NA non-coding upstream 51231 2212955 ~ 2214142 (-)
G151033 NA non-coding upstream 63595 2225319 ~ 2225764 (-)
G151034 LOC106674584,LOC106674915,LOC106675207,LOC106675343,LOC106676464,LOC106676424,LOC106675739 non-coding upstream 77423 2239147 ~ 2239811 (-)
G151044 NA non-coding upstream 108246 2269970 ~ 2270192 (-)
LOC120573864 NA other downstream 260640 1845740 ~ 1872092 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other downstream 310604 1816065 ~ 1822128 (-)
LOC120574289 NA other downstream 392807 1591689 ~ 1739925 (-)
G150856 NA other downstream 393251 1724122 ~ 1739481 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other downstream 512261 1606215 ~ 1620471 (-)
G151146 NA other upstream 238085 2399809 ~ 2805411 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other upstream 712194 2873918 ~ 2896343 (-)
G151227 LOC103393680 other upstream 749602 2911326 ~ 2915367 (-)
G151344 smarca4 other upstream 1150003 3311727 ~ 3316915 (-)
LOC120575464 NA other upstream 2200124 4361848 ~ 4367343 (-)

Expression


Co-expression Network