XLOC_004845 (CT573006.2)



Basic Information


Item Value
gene id XLOC_004845
gene name CT573006.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 32402084 ~ 32416844 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00009566
GATTTTTCTTAAATTGCGCATGCTCGCTAACTTTATGAGTCTGTAGGATGTCCCATCTGTTGATTTTCAGCTCTGAAGTGTGCTCAACAACAACTTAGAGATCCTctgtAAGCGACTGGCGTTGTGCAGCCTATTGTGTGTGGCTAaaggtaaatgtgtgtgtgaggtggaTGGGTTTGTGGGTGCCAAAGGATTGGAATACTTGATGAATTCAGTGAATATCCTGTGATTGCCATTAACAGATGTAATGACCACAAACGCAAGCAATAAAAATCCAGCCACAGCACCAAGACCAATGAACACGTTCCGAAGACTCGACTCTGGACCATctCATGTGTCGGGTGTTAACCAGCGACCCGTCATTGATTTCTGGTCTTATTCCAATCAAGTGACACATTAGAGGGTAAACGTTGACTGTCTCAAATGGTCCAACCAACAAGTTCCTGTGAAAATCTGGTCCCACTGCCCTGAAAAAAGGCTTCATGTCCATCACTTCATTGTCATAGCCATGTTCTCCTTTATTGTTCTGGAATACGTAGAAC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104417

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00009566 True 542 lncRNA 0.44 4 32402084 32416844

Neighbor


gene id symbol gene type direction distance location
XLOC_004844 nog3 coding upstream 11640 32388860 ~ 32390444 (+)
XLOC_004843 ANKFN1 coding upstream 27928 32292564 ~ 32374156 (+)
XLOC_004842 si:ch211-277e21.1 coding upstream 136915 32199651 ~ 32265169 (+)
XLOC_004841 NA coding upstream 215517 32170468 ~ 32186567 (+)
XLOC_004840 hlfb coding upstream 236857 32159272 ~ 32165227 (+)
XLOC_004846 NA coding downstream 14770 32431614 ~ 32526346 (+)
XLOC_004847 rbfox3a coding downstream 312626 32729470 ~ 33251465 (+)
XLOC_004848 BX936416.1 coding downstream 534938 32951782 ~ 32951896 (+)
XLOC_004849 csnk1db coding downstream 903660 33320504 ~ 33336787 (+)
XLOC_004850 NA coding downstream 923371 33340215 ~ 33343285 (+)
XLOC_004837 dre-mir-2196 non-coding upstream 485032 31916943 ~ 31917052 (+)
XLOC_004836 CR450698.1 non-coding upstream 583479 31795031 ~ 31818605 (+)
XLOC_004830 NA non-coding upstream 770787 31608889 ~ 31631297 (+)
XLOC_004829 NA non-coding upstream 798569 31583376 ~ 31603515 (+)
XLOC_004854 NA non-coding downstream 1179058 33595902 ~ 33606588 (+)
XLOC_004855 NA non-coding downstream 1185680 33602524 ~ 33605438 (+)

Expression



Co-expression Network