G152043 (cdc42ep1,LOC102301584,LOC102206375,LOC102078793)


Basic Information

Item Value
gene id G152043
gene name cdc42ep1,LOC102301584,LOC102206375,LOC102078793
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5178316 ~ 5227241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206001
CAGGAAGCCATTTAAGAGCTGTATGATGCTACTGAAaggggacagaaagagagaaaaaccagagagagtgagagagagaaattgcCTTCAGCAGGCTTATTTAGCTGCAAAATCTAAATATGCTTTCTTTGGATGAACTTATTATGTAGGTTTAGCCTAGCATCAGCAttaacctgcagagatctgaggagcagttaaacattatcctcatgaatccaccggcGTTTAAGATTCCAaccaaagaaagcagaaggtaacggatatccggccgaaaagagtatGATCcggcggcaacagagcaatcccggaagtggaacgttgtggataaaGAGGAAATAATATGAAGGAGTCATCTGTCGAGCTGATGGAGCTGGGGAACAGCACCCTCTGTAGGCACCCATTGGAGTCCATGTTCAGCTGGGGCAGGGAGATGGCGTTCTTGATGATGGGTGAGACATCTGGTGGCGTGGATGACAAGTCCCGGGAGCCCCCTCGCGGACGCGGCCCAGAGTTCTTCCGTACATGCCGAAAGGTGCGTGTGAAGAACCCGGTCGTCCTGGAGCTGTTTGCTGAGTCTGGACTTCCTGGTTCCCGGTTGCCCCCGTAGTTGCTAAGGAAGGAAGTGTCACCAAACACTTCCCCGCCACGACCAACATGCATAGTGTGTCGGAAGTCACCCAGCGGCGGGCTGATCATGTCCACAGAGAGTTCGCTCTTGAAACGACGTTTCCCCTGCGAGCCAGACACAAGGCCCTTGATCCCTGGCAGTTTTCCCAGACTCATTCTGACTGGAAAGTTGCGTAATTTCCCTTTAATTTAAATGAGAGCGTCTGAGCTCCGATAACATGTCAGTCAAGTTTGAATTCCAGTTTAGGGTCCACTGtaaaaccagagagagagaaaaaaatttattaaaatgcCAGGACAGTGAGAACAGAAAACCCAAAAATGTGGTTGTTTAGCCGGCAGAGAATGTGTGTATAATCCATTCTCCACACGGCCAGAGCCAACTATTCATCCACCGTCGGCCCACGGTTTCTCTTTTGGGTCTACACTGAAAAGATGCCAGTTTCTACtatttctcttttctcctctcatGTACCGTTAGTACTGCACATGACCAAACGCTCAGCTCACTTCTCCTGCACAACAGCAGCTTTCAGctgtgacaaaataacaaagGAGGTGAATTACAAGGCGATACTTTGTTTCCTCTGGTTACCACAGCGTATGCGGTTGGAGAGTTTAGGGCTGGCTGGACTCTTGTTGGTTGGTTCAGTTTAGAAAAACAAAGTCAAGCCGCAACTGCAAATAACTTTAGACGTGATTTCAGTGCAACATCTTAGCTGGTTTGAGTGACAAAAGTCATGAAATATACTGGTTTGCACTGTCTTCACTTCATTCTAGATGTGGAGAACTGACTTGTAGTCAGTCTCAATTTACATTTTACTTATAACACTAAGAGGATCACCTCACCGGGAAGTCTCTTTAATTTGCCTTTTACCCAAATCTAATAAAAGAAGCTATTACATACGTATAGCTCgaattttaaaaacaaactgagaCTGGACGCTATGTTTTACCAGCACACAAATGTATAAATAACTCTGTTTAGGATATGTAATTGGATTGAGTCACTTTATACAGCCATTTTCCCACAGACC
>TU206002
CTTTAGAATAGTTTAAACAATCTATAAAATCATGGCAGCAACATAGtgcagagagaggggaaggtCCAGAAACTGAATACAGACCAGGATCTGGTAGTTGATCACTGACGTCCCTTATGTGAAAGAGGAAGCATGTTTCTATTGAAGAACAGAATATCACAACGTTCAGCCTCCCGGACTCGaaataaaccaaaccaaatCAATGAAGTTCCTTCTTCCtttcagaaagacttttcaacATCTAGACTTtgacctcttcctcctcttcagaAAAGGCATATGGTGTTTTGCGGCTTTGGGACAAAGCAGGAGAGGGGGTGTCGTTGCCCATCCTGGTTCCCTTTGTGAAGGAGCCTCCCCCATAATGACGAGACAGCACGTCAGCCGCCCTCTGGAACCGTTCTGCCTCCATCGCCGGCTCCGCTCTCTGAGGAGACCCAGTGCACACATCTGGAGTCCTCAGTgaccccctctcctcctcttgctctgcCCAGTCCACGCTACAAGAGCGCCCCCTGTTGTTCATGTTACTGCTGAATGACCTGCTACTCATGGAGGGGTTGGGTGAAGTCAACTCAGGGCTCTGCACAGGCGTCTCTGTTAGAGAGCTGTggtcctctccttcctcttcctcgccTGCTGCCTGGCTGTGATTGGACGTCTGAAGGTAGCTGGGGTTGTCAATCAAGCTCAGCACCTCACTCATAAGGGAAGGGCCAAGGTCTACAGTGAACGACATGAGGGAGTCTGAGCGAGTCAGCGTGAAGCTACCGCTGTCGGGTAGAGACCCTTTCCGCACGTCTCCATCATAAAACTGTCTGTCAATGCGAGAGAGGCGGGGCAGCGTGACAAATCCAGACTGTAGACCATATGTGCAGAAGGAGTCATCTGTCGAGCTGATGGAGCTGGGGAACAGCACCCTCTGTAGGCACCCATTGGAGTCCATGTTCAGCTGGGGCAGGGAGATGGCGTTCTTGATGATGGGTGAGACATCTGGTGGCGTGGATGACAAGTCCCGGGAGCCCCCTCGCGGACGCGGCCCAGAGTTCTTCCGTACATGCCGAAAGGTGCGTGTGAAGAACCCGGTCGTCCTGGAGCTGTTTGCTGAGTCTGGACTTCCTGGTTCCCGGTTGCCCCCGTAGTTGCTAAGGAAGGAAGTGTCACCAAACACTTCCCCGCCACGACCAACATGCATAGTGTGTCGGAAGTCACCCAGCGGCGGGCTGATCATGTCCACAGAGAGTTCGCTCTTGAAACGACGTTTCCCCTGCGAGCCAGACACAAGGCCCTTGATCCCTGGCAGTTTTCCCAGACTCATTCTGACTGGAAAGTTGCGTAATTTCCCTTTAATTTAAATGAGAGCGTCTGAGCTCCGATAACATGTCAGTCAAGTTTGAATTCCAGTTTAGGGTCCACTGtaaaacTGGCAGCGAGTCCTTTTTGCAGGAGCCTTCAATAGATCTCTACTTTTGAGAGGATTGTGTGCGTCTCATGAACTTGTCTTCCTCAAAGTCCAAGCAGAGAGAGCTCGGGGTCCACTGCCATGCACCGTCTACCACTAAAGCCGTTTATCCATGTGTGGCACCACACTGTCCATGGGACATCCTGTCACCAGGCCTGTCGCTCCGCGTCTTTATCCTCAGTTCCCTTGGTCCCCTTTGTACCCAAGGCGCCAGACCTTTGAGAGGCAACGAAAACAATCAGAGCAGAGGAAAAAGGTGGCTGAAGCGTTCTTAAAAAGGCCAATAAAGTAGTGTGAAGTAATCCAGCGACTCTTTTGTCTGCATCATCGTGGAAGAAAAAATAAGGCTCATCCAGGATTGTCCATGCACTGGATTAGCTGCTAATCCCTTCTGTCTTCCCTCCCTCACTTGCTCTCTGCCTTCTTCAATCCACTTAGTGGCCCGATGGTTTCCAGGTAGAGGGCCTTCTGTGTTTTCATTCAGTTCACTTAAAGCCAGC
>TU206003
ctTGATAAACAATTCTATATACATGTAACAGATGAAGTGATCAATATAAGCTATAATTGTACAACGATGTTAGGTTTATAACACCATTATTCCTGCTTACAGTTAATTATTTTACAATCTACAGAAGTTTTATCTCAGGTGTTATAAAACCTTATTTCCCAAATTCCAGGTTCAACTTGACGCCTCAGACCTTTGAACCTGAagatctttatttatgtaaaacacATTTAGCTGTTGAACATCATGATTATGAAGTGAGCGTTTATGTACAGTGTGAAAAAATAGTTCATTCAACTGTTATGAGGACAATTAATGCAGGTGTGACAAATGTTattcacttttacatttttgttactGATGAAAACAAAggtaattattaatatttagtCTTGACAAGAATCCATTGTGTGGTGTCCGACTCATTCAGTGACCTATCTTTAGAATAGTTTAAACAATCTATAAAATCATGGCAGCAACATAGtgcagagagaggggaaggtCCAGAAACTGAATACAGACCAGGATCTGGTAGTTGATCACTGACGTCCCTTATGTGAAAGAGGAAGCATGTTTCTATTGAAGAACAGAATATCACAACGTTCAGCCTCCCGGACTCGaaataaaccaaaccaaatCAATGAAGTTCCTTCTTCCtttcagaaagacttttcaacATCTAGACTTtgacctcttcctcctcttcagaAAAGGCATATGGTGTTTTGCGGCTTTGGGACAAAGCAGGAGAGGGGGTGTCGTTGCCCATCCTGGTTCCCTTTGTGAAGGAGCCTCCCCCATAATGACGAGACAGCACGTCAGCCGCCCTCTGGAACCGTTCTGCCTCCATCGCCGGCTCCGCTCTCTGAGGAGACCCAGTGCACACATCTGGAGTCCTCAGTgaccccctctcctcctcttgctctgcCCAGTCCACGCTACAAGAGCGCCCCCTGTTGTTCATGTTACTGCTGAATGACCTGCTACTCATGGAGGGGTTGGGTGAAGTCAACTCAGGGCTCTGCACAGGCGTCTCTGTTAGAGAGCTGTggtcctctccttcctcttcctcgccTGCTGCCTGGCTGTGATTGGACGTCTGAAGGTAGCTGGGGTTGTCAATCAAGCTCAGCACCTCACTCATAAGGGAAGGGCCAAGGTCTACAGTGAACGACATGAGGGAGTCTGAGCGAGTCAGCGTGAAGCTACCGCTGTCGGGTAGAGACCCTTTCCGCACGTCTCCATCATAAAACTGTCTGTCAATGCGAGAGAGGCGGGGCAGCGTGACAAATCCAGACTGTAGACCATATGTGCAGAAGGAGTCATCTGTCGAGCTGATGGAGCTGGGGAACAGCACCCTCTGTAGGCACCCATTGGAGTCCATGTTCAGCTGGGGCAGGGAGATGGCGTTCTTGATGATGGGTGAGACATCTGGTGGCGTGGATGACAAGTCCCGGGAGCCCCCTCGCGGACGCGGCCCAGAGTTCTTCCGTACATGCCGAAAGGTGCGTGTGAAGAACCCGGTCGTCCTGGAGCTGTTTGCTGAGTCTGGACTTCCTGGTTCCCGGTTGCCCCCGTAGTTGCTAAGGAAGGAAGTGTCACCAAACACTTCCCCGCCACGACCAACATGCATAGTGTGTCGGAAGTCACCCAGCGGCGGGCTGATCATGTCCACAGAGAGTTCGCTCTTGAAACGACGTTTCCCCTGCGAGCCAGACACAAGGCCCTTGATCCCTGGCAGTTTTCCCAGACTCATTCTGACTGGAAAGTTGCGTAATTTCCCTTTAATTTAAATGAGAGCGTCTGAGCTCCGATAACATGTCAGTCAAGTTTGAATTCCAGTTTAGGGTCCACTGtaaaaccagagagagagaaaaaaatttattaaaatgcCAGGACAGTGAGAACAGAAAACCCAAAAATGTGGTTGTTTAGCCGGCAGAGAATGTGTGTATAATCCATTCTCCACACGGCCAGAGCCAACTATTCATCCACCGTCGGCCCACGGTTTCTCTTTTGGGTCTACACTGAAAAGATGCCAGTTTCTACtatttctcttttctcctctcatGTACCGTTAGTACTGCACATGACCAAACGCTCAGCTCACTTCTCCTGCACAACAGCAGCTTTCAGctgtgacaaaataacaaagGAGGTGAATTACAAGGCGATACTTTGTTTCCTCTGGTTACCACAGCGTATGCGGTTGGAGAGTTTAGGGCTGGCTGGACTCTTGTTGGTTGGTTCAGTTTAGAAAAACAAAGTCAAGCCGCAACTGCAAATAACTTTAGACGTGATTTCAGTGCAACATCTTAGCTGGTTTGAGTGACAAAAGTCATGAAATATACTGGTTTGCACTGTCTTCACTTCATTCTAGATGTGGAGAACTGACTTGTAGTCAGTCTCAATTTACATTTTACTTATAACACTAAGAGGATCACCTCACCGGGAAGTCTCTTTAATTTGCCTTTTACCCAAATCTAATAAAAGAAGCTATTACATACGTATAGCTCgaattttaaaaacaaactgagaCTGGACGCTATGTTTTACCAGCACACAAATGTATAAATAACTCTGTTTAGGATATGTAATTGGATTGAGTCACTTTATACAGCCATTTTCCCACAGACC

Function

symbol description
cdc42ep1 Enables cadherin binding activity involved in cell-cell adhesion. Involved in positive regulation of pseudopodium assembly and regulation of cell shape. Located in adherens junction and focal adhesion.

NR:

description
PREDICTED: extracellular serine/threonine protein kinase FAM20C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206001 False 1664 TUCP 0.45 2 5179064 5183655
TU206002 False 1962 TUCP 0.52 4 5178316 5227241
TU206003 True 2634 TUCP 0.46 2 5179064 5187041

Neighbor

gene id symbol gene type direction distance location
zmp:0000000896 card10 coding downstream 16379 5143111 ~ 5161937 (-)
LOC120575075 LOC103368117 coding downstream 37203 5124962 ~ 5141113 (-)
LOC120575081 csnk1e,LOC101067908 coding downstream 54807 5111472 ~ 5123509 (-)
LOC120575080 tmem184b,LOC102777864,LOC101067677 coding downstream 67004 5093585 ~ 5111312 (-)
LOC120575087 ddx17 coding downstream 85175 5083750 ~ 5093141 (-)
LOC120575084 LOC105918010 coding upstream 48966 5276207 ~ 5281641 (-)
gucy2ca gucy2c coding upstream 82359 5309600 ~ 5326670 (-)
LOC120575093 LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535 coding upstream 122928 5350169 ~ 5358831 (-)
polr3h polr3h coding upstream 133216 5360457 ~ 5366750 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding upstream 139824 5367065 ~ 5384844 (-)
G152052 NA non-coding downstream 7664 5170304 ~ 5170652 (-)
G151951 NA non-coding downstream 154224 5013517 ~ 5024092 (-)
G151924 NA non-coding downstream 284998 4869887 ~ 4893318 (-)
G151799 NA non-coding downstream 594156 4583204 ~ 4584160 (-)
G151790 NA non-coding downstream 654742 4518781 ~ 4523574 (-)
G152081 NA non-coding upstream 60617 5287858 ~ 5290361 (-)
G152104 tob2 non-coding upstream 163264 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 219262 5446503 ~ 5448057 (-)
G152233 ep300 non-coding upstream 281476 5508717 ~ 5509392 (-)
G152249 pdap1,LOC102785718 non-coding upstream 356138 5583379 ~ 5587735 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 412823 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 713325 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 810973 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 1861401 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 2262949 2911326 ~ 2915367 (-)
G152114 rbx1 other upstream 234605 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 322050 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 347439 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 353022 5580263 ~ 5582864 (-)
LOC120574101 NA other upstream 764696 5991937 ~ 5995189 (-)

Expression


Co-expression Network