G152114 (rbx1)


Basic Information

Item Value
gene id G152114
gene name rbx1
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5461846 ~ 5464418 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206084
GTTCTTGAACGTGAATGATAAACCTTGTTATTTTCAGCAGCTGGCCTTCCTGCTTCACAAACGAGCACACGGAACTGTCAGAAACCCCCCTACTACAGGCACCAGTCAAAACAAGATTTGTGACAacattaatgtttatttgtgtacttaCAACATACCAAAACAAAGACATGGGTGTAAAAGAACAACTAGGCTTACAAGTGGGAGGGAACAGAGAAGGTGACACTTGTAGTAGCCAAGAAAACAGGTCAGCAACAATACAGCTAGTGTCCGTATCTGCAAaaacatgagagagagaaaggtcaTACTGTGTACAGTTCATTTCAAGAAATATTCACAACTTTGTTACAATAATCCACAGACATTTCCCCAAAGCCATACATCTGTGCTACACTTTCAAGAGTTACACTTGAATTTCCAAGTACTGATACTCACTTCTGAAACTCCCACTCCCTGTTGTCCAGAGGGCACACCTGTCTGGTTTTCAGCCAGCGGGAAATACAGTGGAAATGGAAGGCATGGTTGCAGACACCCCAGGCTACAGTGCACTCCTCAGAGGTTGCAGAAGCTTGGTTGGCCTGGCACTCTATACAGAGATCCATGATGTGGTTCCGACAGATAGCGCAGTTATCCACCACGATGTCCCAGGCCCACAGTGCCACAGCATTCCACTTCTTTACTTCAAATCGCTTTTTGCTAGCTCCACTGTTTGTGCCGCTTGGCGTATCTACATCCATAGCTGCTGCCATCTTGAAAGGAGAAGTTTATGACGAGTTTATTTACCCGGAAGAAACACAGCAATTTCCGTTGTAGTCGTTTGCTGTTGTAGTTCTTATTATACAACCATGTGCTTTAGCCGCTTGTGTCACGATTTGCTCATTGTGAAGAAGATCTGAT

Function

symbol description
rbx1 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human RBX1 (ring-box 1).

NR:

description
hyperosmotic protein 21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206084 True 897 TUCP 0.44 4 5461846 5464418

Neighbor

gene id symbol gene type direction distance location
LOC120575348 NA coding downstream 24483 5416137 ~ 5437363 (-)
tefb LOC106601241,LOC106607162,LOC107091051 coding downstream 47867 5399023 ~ 5413979 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding downstream 77002 5367065 ~ 5384844 (-)
polr3h polr3h coding downstream 95096 5360457 ~ 5366750 (-)
LOC120575093 LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535 coding downstream 103015 5350169 ~ 5358831 (-)
st13 st13 coding upstream 1833 5466251 ~ 5478667 (-)
cbx7a NA coding upstream 69438 5533856 ~ 5541201 (-)
tnrc18 tnrc18 coding upstream 197443 5661861 ~ 5717548 (-)
actb2 actb,LOC102799139 coding upstream 261468 5725886 ~ 5730322 (-)
rnf216 rnf216,LOC107591749,LOC106595856 coding upstream 329689 5794107 ~ 5818120 (-)
G152107 NA non-coding downstream 13789 5446503 ~ 5448057 (-)
G152104 tob2 non-coding downstream 66731 5390505 ~ 5395115 (-)
G152081 NA non-coding downstream 171485 5287858 ~ 5290361 (-)
G152052 NA non-coding downstream 291194 5170304 ~ 5170652 (-)
G151951 NA non-coding downstream 437754 5013517 ~ 5024092 (-)
G152233 ep300 non-coding upstream 44299 5508717 ~ 5509392 (-)
G152249 pdap1,LOC102785718 non-coding upstream 118961 5583379 ~ 5587735 (-)
G152256 NA non-coding upstream 136895 5601313 ~ 5606088 (-)
G152270 NA non-coding upstream 195668 5660086 ~ 5660898 (-)
G152280 NA non-coding upstream 273513 5737931 ~ 5783361 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 234605 5178316 ~ 5227241 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 696353 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 996855 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 1094503 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 2144931 3311727 ~ 3316915 (-)
top3a top3a,LOC102783137 other upstream 84873 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 110262 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 115845 5580263 ~ 5582864 (-)
LOC120574101 NA other upstream 527519 5991937 ~ 5995189 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other upstream 717990 6182408 ~ 6228114 (-)

Expression


Co-expression Network