G152249 (pdap1,LOC102785718)


Basic Information

Item Value
gene id G152249
gene name pdap1,LOC102785718
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5583379 ~ 5587735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206281
ATCTGAAATATTTTCATGAATCAGTTATATACAATGTAATATCCCCCCCAAAACATAGTGGCAAAGCTCAGTTAGCAAAGTCAGAATTGTACAATACCATTATTAATACCATGTACAAGATTATAGGTTAGAAGGGGTTCATTCCAAGTCTATGTGAACACTGCTGTATTCTCAATTGTAGCTTAAGTTTCTGGAGGGATCAACGAGGTCATTATTCCATGCCAAAATATACATAACCCCTCTCCACTGGTGTCTCCGCAACCATTTTCCAAATGGTCATATGTTACAGTAATGTCAACATCCTTCCTTTAAAAAtagtcaaatatatatattgcgCCAGTCCATGAACATGTAAAAACGCCTCTGATAAATAATCTGCATCATTTCATGGAGAGGGACTTTATTCCTCTCGCCGCTGCTGCCGCTGCATCTTTTGCTttttttctcttcttctttctttcttgccgcgtcttctctctgtttcttgATAATGGCGAGGCGAGCGAGGTCAGCTTTGGCCTGGTCTGTCTTTCCTGCCAAGTGCATCTTCATGTAGCGCTCCTTTGCTTTCTGCTTCTCAATCTCCTCTctgtgccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU206282
ATTAATAGTCATAAAACAACTCATCAGCTTTTTAGTGTTAATGCCCTATCTGTTACATGCAGGGCTTTCCGTAGGGTAGGACACTGTGCTGCATTCTCTCGTGTAGCACAATCACACCACTTTCAAAATACGTTAgcaatatgatttttttaacataacatTTTGACATTTCTAGCACATAATACACAAGACAGTAGAGCTGGGTGTGAGTGCTTTATACTGCTCCATTCTACTCCAAATGTCACGGCACGcgacaccaaacacacacctctctctccttGACAACTGCTTGGGCTCGTCCAGCTCGATCTGTGTCACCTTCTTGGTCTTCTGAGCCACTCTGTTGGGGTTCTCGATTTCTATTAAGCCCTCTACACCCGCTCTCCTCCTCTGCGAACACATCACACAACAGCTCATACAAGATAAAGTGAATGCTCTGAATATAGCAAACAATGAAATGACCACATGATCACGTTCATGGGAAGTTACAAGGTGCTTCATAGGTGCACATAAGTCAATAATAACaaattattatacattattaatgtgtgttttggtAACAGAGCAAGGGAATGACAGAAACAGTGCGGCGGTACATCTGAGTTTTCATCATCGCTGTCTTCTGATCCTGATGCAGGTAGCTTGTCCTCCGCTGTGTCATTCTGAGCTGCACCGCCCACCTCTTCTGCTTCCTGCTCTTGCTAGAACACATACATGAGGAGACCACACACAGGAGAATGTCATCAAACCGGTGCATCAGGTCAAACACATGCAGGGAATACATACACAACTTAGGAATGCAGGTTTTTACTCCATTCAAACACCACAGCAGCTGCTTTCAGTTTCTCTCTTCTGGCTGGTGGAGTACTAATTAGAGTCTTTAGAGAGGGGCTCACTCAGTTACATACTCTTTCCAATGGAACGATGCTATGGAGTTGCATTTTGGGAAGTGTAGGAGCCAGCATTTTTAGAGCTTGACCAATACTTAAAAAGCTGCACATTGTCTCTGTGTGGGACATGATTCAACAGTCTTTGGATGCACACTCGACCAacctttttcctctctttctctgccttcATCTGGGCGTCTATCTCCTCGGGACTGGTGTACGTCCGCACGCGACCCTTGTGGCCACCTTTCCTACCTCCTTTTGGCATTTTGGCAAACGAATC
>TU206284
ATCTGAAATATTTTCATGAATCAGTTATATACAATGTAATATCCCCCCCAAAACATAGTGGCAAAGCTCAGTTAGCAAAGTCAGAATTGTACAATACCATTATTAATACCATGTACAAGATTATAGGTTAGAAGGGGTTCATTCCAAGTCTATGTGAACACTGCTGTATTCTCAATTGTAGCTTAAGTTTCTGGAGGGATCAACGAGGTCATTATTCCATGCCAAAATATACATAACCCCTCTCCACTGGTGTCTCCGCAACCATTTTCCAAATGGTCATATGTTACAGTAATGTCAACATCCTTCCTTTAAAAAtagtcaaatatatatattgcgCCAGTCCATGAACATGTAAAAACGCCTCTGATAAATAATCTGCATCATTTCATGGAGAGGGACTTTATTCCTCTCGCCGCTGCTGCCGCTGCATCTTTTGcttttttctcttcttctttctttcttgccgcgtcttctctctgtttcttgATAATGGCGAGGCGAGCGAGGTCAGCTTTGGCCTGGTCTGTCTTTCCTGCCAAGTGCATCTTCATGTAGCGCTCCTTTGCTTTCTGCTTCTCAATCTCCTCTctctctctccttGACAACTGCTTGGGCTCGTCCAGCTCGATCTGTGTCACCTTCTTGGTCTTCTGAGCCACTCTGTTGGGGTTCTCGATTTCTATTAAGCCCTCTACACCCGCTCTCCTCCTATCTGAGTTTTCATCATCGCTGTCTTCTGATCCTGATGCAGGTAGCTTGTCCTCCGCTGTGTCATTCTGAGCTGCACCGCCCACCTCTTCTGCTTCCTGCTCTTGctttttcctctctttctctgccttcATCTGGGCGTCTATCTCCTCGGGACTGGTGTACGTCCGCACGCGACCCTTGTGGCCACCTTTCCTACCTCCTTTTGGCATTTTGGCAAACGAATC

Function

symbol description
pdap1 Enables RNA binding activity. Predicted to be involved in signal transduction. Located in cytosol and plasma membrane. Biomarker of high grade glioma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206281 False 707 lncRNA 0.42 2 5585236 5587735
TU206282 True 1173 lncRNA 0.45 2 5583379 5585169
TU206284 False 935 lncRNA 0.45 6 5583379 5587735

Neighbor

gene id symbol gene type direction distance location
cbx7a NA coding downstream 42178 5533856 ~ 5541201 (-)
st13 st13 coding downstream 104712 5466251 ~ 5478667 (-)
LOC120575348 NA coding downstream 146016 5416137 ~ 5437363 (-)
tefb LOC106601241,LOC106607162,LOC107091051 coding downstream 169400 5399023 ~ 5413979 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding downstream 198535 5367065 ~ 5384844 (-)
tnrc18 tnrc18 coding upstream 74126 5661861 ~ 5717548 (-)
actb2 actb,LOC102799139 coding upstream 138151 5725886 ~ 5730322 (-)
rnf216 rnf216,LOC107591749,LOC106595856 coding upstream 206372 5794107 ~ 5818120 (-)
smurf1 smurf1,LOC102787679,LOC103393300 coding upstream 233891 5821626 ~ 5840646 (-)
wipi2 wipi2 coding upstream 287007 5874742 ~ 5881666 (-)
G152233 ep300 non-coding downstream 73987 5508717 ~ 5509392 (-)
G152107 NA non-coding downstream 135322 5446503 ~ 5448057 (-)
G152104 tob2 non-coding downstream 188264 5390505 ~ 5395115 (-)
G152081 NA non-coding downstream 293018 5287858 ~ 5290361 (-)
G152052 NA non-coding downstream 412727 5170304 ~ 5170652 (-)
G152256 NA non-coding upstream 13578 5601313 ~ 5606088 (-)
G152270 NA non-coding upstream 72351 5660086 ~ 5660898 (-)
G152280 NA non-coding upstream 150196 5737931 ~ 5783361 (-)
G152298 NA non-coding upstream 204232 5791967 ~ 5792175 (-)
G152302 NA non-coding upstream 286042 5873777 ~ 5874308 (-)
bud31 bud31,LOC106595689 other downstream 515 5580263 ~ 5582864 (-)
top3a top3a,LOC102783137 other downstream 15840 5549291 ~ 5567539 (-)
G152114 rbx1 other downstream 118961 5461846 ~ 5464418 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 356138 5178316 ~ 5227241 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 817886 4585173 ~ 4765493 (-)
LOC120574101 NA other upstream 404202 5991937 ~ 5995189 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other upstream 594673 6182408 ~ 6228114 (-)
G152567 NA other upstream 1132049 6719784 ~ 6720643 (-)
arhgdig NA other upstream 1185145 6772880 ~ 6801536 (-)
grin2aa grin2a,LOC102780805 other upstream 1981983 7569718 ~ 7723914 (-)

Expression


Co-expression Network