XLOC_004846


Basic Information

Item Value
gene id XLOC_004846
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 32431614 ~ 32526346 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009567
TTCGAAATCCAATGTAGAGAATCCAGGAGCTGATTTTAGATTGTCATGTTTAATAACCAATCCGATTGCTTTTTGTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGtgcaCCTTTTTCTTGGAGATGGACTGGATTCGAAGCGAGAAGTAAATCCGAGCTGCTaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATCGGTGCGCTGGAAGCTGAGGGCACCTGCGTGAACCTGTTAATGGAGGTGCTGAGTGCCGGTGATGGGGCTGAGAGAAGGGCAGCTGTGAGTGGGGAAATCCCAGTTTAGAGGCATTGTGTGCAGGCCGCTGCTTTGGGATCCATTTCAGGCCCACAGCGTTAACAGGATATGATTAGTGACTGCTGGGAATCCACACTGTGGATGAGTGAAAACACCAGggctttattttgtgtgtgtgtgtgtgtgtgtgtctgactgtgactgtgtgtttttctgtttttattgtaaaatgttgaCTGGCTTCATTCCTGATGCACACAATCTGATGCATTTGATCCTTTCAGCCAGTaagtgctttgtgtgtgtgtgaattgctAGATAGTGTGCtagataataaaaatgatatcCAGCTATTGACAGTTTTTACCTGTTTACACTTGTATGGTATAAGGGTACCATCATTCATATTTCTAATGAGTGCATAATTTAgcatttaaaacaagcaaagaaGCAGCAGTAACATGTGACAGAAGCcgtacttaaagggccatgaaaccccct
>TCONS_00010958
GCTGATTTTAGATTGTCATGTTTAATAACCAATCCGATTGCTTTTTGTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGtgcaCCTTTTTCTTGGAGATGGACTGGATTCGAAGCGAGAAGTAAATCCGAGCTGCTaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATTTATACTTGTGTGAACAGAGCTGAAGAATAGGAAATACACCCCCCCCCTcaatc
>TCONS_00010960
CATGTTTAATAACCAATCCGATTGCTTTTTGTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGtgcaCCTTTTTCTTGGAGATGGACTGGATTCGAAGCGAGAAGTAAATCCGAGCTGCTaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATGCATCGATTTGAAAAAACGTCAAAGTGGAGCCCAAGATGTG
>TCONS_00010959
CATGTTTAATAACCAATCCGATTGCTTTTTGTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATGCATCGATTTGAAAAAACGTCAAAGTGGAGCCCAAGATGTG
>TCONS_00010961
GTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGAATTCAGTCTGCTGAAACGCGAGGAGGAAAGAAACCATTTTTATTTCAGCTCCCTGTGGAAATATACTGCCACGACTATCCATACAAGCTCAAAACAACATCAGACACCATGAGTGTCCTTCAACAGAAACTTTCCAACAACTTTCCTTTAATGAAAAGCACAATGACAAGCCCAAGGAGAAGCAATTCACCGAAAAACAATTTACGTCTCAAAAAGGACAAAGAGAGTGTTGAGG
>TCONS_00010962
GTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATtGTGACAAGATAAAGGCGAGTCTGCACTTCAAACAGCTTCTGTTGGCTGCGCAGGAATAACAATCGGcgcttcattatttatttttcgcCTCTGTTGTCTCTGGCAGTTATCTTAGCCATACGTCGTTATCCAACACCCCCCCTCCGACAGTCCTCCTCCCGTTATTATTACGAATTCAAAAGAAATACTTTCTGAAGTGTAGCGAGCGCCTGGGGAGCTGATTAGCTATTTACAGATGCCACCCACAAAATCCCATGACCCTTGGAGTGGAGGCTGCTAGCAGACAAGCCAATTAGCAAAGAGAGAGGCTGCAGTCTGCTATTAATGCCATTATTCTCTCTATAATGTCGG
>TCONS_00010963
GTAAATATGGGTGTGGCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATCGGTGCGCTGGAAGCTGAGGGCACCTGCGTGAACCTGTTAATGGAGGTGCTGAGTGCCGGTGATGGGGCTGAGAGAAGGGCAGCTGTGAGTGGGGAAATCCCAGTTTAGAGGCATTGTGTGCAGGCCGCTGCTTTGGGATCCATTTCAGGCCCACAGCGTTAACAGGATATGATTAGTGACTGCTGGGAATCCACACTGTGGATGAGTGAAAACACCAGggctttattttgtgtgtgtgtgtgtgtgtgtgtctgactgtgactgtgtgtttttctgtttttattgtaaaatgttgaCTGGCTTCATTCCTGATGCACACAATCTGATGCATTTGATCCTTTCAGCCAGTaagtgctttgtgtgtgtgtgaattgctAGATAGTGTGCtagataataaaaatgatatcCAGCTATTGACAGTTTTTACCTGTTTACACTTGTATGGTATAAGGGTACCATCATTCATATTTCTAATGAGTGCATAATTTAgcatttaaaacaagcaaagaaGCAGCAGTAACATGTGACAGAAGCcgtacttaaagggccatgaaaccccct
>TCONS_00010964
GCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattAACTCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGtgcaCCTTTTTCTTGGAGATGGACTGGATTCGAAGCGAGAAGTAAATCCGAGCTGCTaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATtGTGACAAGATAAAGGCGAGTCTGCACTTCAAACAGCTTCTGTTGGCTGCGCAGGAATAACAATCGGcgcttcattatttatttttcgcCTCTGTTGTCTCTGGCAGTTATCTTAGCCATACGTCGTTATCCAACACCCCCCCTCCGACAGTCCTCCTCCCGTTATTATTACGAATTCAAAAGAAATACTTTCTGAAGTGTAGCGAGCGCCTGGGGAGCTGATTAGCTATTTACAGATGCCACCCACAAAATCCCATGACCCTTGGAGTGGAGGCTGCTAGCAGACAAGCCAATTAGCAAAGAGAGAGGCTGCAGTCTGCTATTAATGCCATTATTCTCTCTATAATGTCGG
>TCONS_00010965
GCCTTTCATAGTTTCGCGGTACTGCTTCCGACAGGCCCTCCTGATTTGCAcctgccgagctagtgttgttcccattctgacaaacttccggtgacctgttattGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGtgcaCCTTTTTCTTGGAGATGGACTGGATTCGAAGCGAGAAGTAAATCCGAGCTGCTaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAATCGGTGCGCTGGAAGCTGAGGGCACCTGCGTGAACCTGTTAATGGAGGTGCTGAGTGCCGGTGATGGGGCTGAGAGAAGGGCAGCTGTGAGTGGGGAAATCCCAGTTTAGAGGCATTGTGTGCAGGCCGCTGCTTTGGGATCCATTTCAGGCCCACAGCGTTAACAGGATATGATTAGTGACTGCTGGGAATCCACACTGTGGATGAGTGAAAACACCAGggctttattttgtgtgtgtgtgtgtgtgtgtgtctgactgtgactgtgtgtttttctgtttttattgtaaaatgttgaCTGGCTTCATTCCTGATGCACACAATCTGATGCATTTGATCCTTTCAGCCAGTaagtgctttgtgtgtgtgtgaattgctAGATAGTGTGCtagataataaaaatgatatcCAGCTATTGACAGTTTTTACCTGTTTACACTTGTATGGTATAAGGGTACCATCATTCATATTTCTAATGAGTGCATAATTTAgcatttaaaacaagcaaagaaGCAGCAGTAACATGTGACAGAAGCcgtacttaaagggccatgaaaccccct
>TCONS_00009568
TCTCAAGAGTGTTCAACAGCAGAGGTGAAACTGAAAGTTAACTCCATCAAGAGCAGCGCTGGTTAACCAAGTACAAGGCATCTAATGTGAAACGTTGAAATCATCACTGaACATGAGTTCAGCTGAGAGAGCAGCCTGTCTCTTCCCCTCACATTGGCAGCTTGACATTATCAGGAAAT

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0032153 cell division site cellular_component
GO:0032155 obsolete cell division site part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009567 False 993 lncRNA 0.44 6 32431614 32495365
TCONS_00010958 False 457 lncRNA 0.45 6 32431642 32501829
TCONS_00010960 False 428 lncRNA 0.45 6 32431658 32526346
TCONS_00010959 False 371 lncRNA 0.45 5 32431658 32526346
TCONS_00010961 False 466 lncRNA 0.43 4 32431688 32467321
TCONS_00010962 False 652 lncRNA 0.46 5 32431688 32494782
TCONS_00010963 False 862 lncRNA 0.45 5 32431688 32495365
TCONS_00010964 False 694 lncRNA 0.47 6 32431703 32494782
TCONS_00010965 False 840 lncRNA 0.45 5 32431703 32495365
TCONS_00009568 True 179 lncRNA 0.44 3 32438097 32494226

Neighbor

gene id symbol gene type direction distance location
XLOC_004845 CT573006.2 coding upstream 14770 32402084 ~ 32416844 (+)
XLOC_004844 nog3 coding upstream 41170 32388860 ~ 32390444 (+)
XLOC_004843 ANKFN1 coding upstream 57458 32292564 ~ 32374156 (+)
XLOC_004842 si:ch211-277e21.1 coding upstream 166445 32199651 ~ 32265169 (+)
XLOC_004841 NA coding upstream 245047 32170468 ~ 32186567 (+)
XLOC_004847 rbfox3a coding downstream 203124 32729470 ~ 33251465 (+)
XLOC_004848 BX936416.1 coding downstream 425436 32951782 ~ 32951896 (+)
XLOC_004849 csnk1db coding downstream 794158 33320504 ~ 33336787 (+)
XLOC_004850 NA coding downstream 813869 33340215 ~ 33343285 (+)
XLOC_004851 fasn coding downstream 835602 33361948 ~ 33472581 (+)
XLOC_004837 dre-mir-2196 non-coding upstream 514562 31916943 ~ 31917052 (+)
XLOC_004836 CR450698.1 non-coding upstream 613009 31795031 ~ 31818605 (+)
XLOC_004830 NA non-coding upstream 800317 31608889 ~ 31631297 (+)
XLOC_004854 NA non-coding downstream 1069556 33595902 ~ 33606588 (+)
XLOC_004855 NA non-coding downstream 1076178 33602524 ~ 33605438 (+)
XLOC_004863 NA non-coding downstream 1933323 34459669 ~ 34470463 (+)

Expression


Co-expression Network