G153127 (atp2a1,LOC102238060,LOC106906942,LOC103469116)


Basic Information

Item Value
gene id G153127
gene name atp2a1,LOC102238060,LOC106906942,LOC103469116
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8551296 ~ 8611997 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU207418
GTCCAGTTTCTGCTGCAGAGGGGTCTTCTCCTGCTCAGTGGCAGCCATCTGGTCACGAATCTTACCGATCTCAGTGGAGACACCAGTTGCAACAGCAATACCAGTGGCTCTTCCTGCAGCGATGTTGGTGCCGGAGAACAGCATGTTCTTCTTGTCCTGGTTGACAGCTCGGGGGTCTGGGACGGCGTCAGTGTGTTTAATCACACTGACAGACTCACCAGTAAGAATAGACTGGTCCACACGCAGGGTTGTAGATTTGATGGAGATAAGCCTGATGTCAGCTGGCACTTTGTCACCAACGGAAACCTCCACCACATCACCAGGAACAATCTCCCTGGCCTTGATTCTCTGCACGCTCTTCCTGTCCGACCGGTAAACTTTCCCCATCTCAGGCTCGTATTCCTTCAGAGCCTCAATGGCACTCTCTGCATTGCGCTCCTGCCACACTCCAACGATAGCATTTGCAatgaggatgaggaggatgacTAGGGGCTCAACAAAGGCAGTGACGGTCTCCTCACCTTCCTCAAACAAAGCCAGGACAAAAGAGATGCAGGCGGCCAGCAGTAAGATTCTGACCAACAGGTCCTCGAACTGTTCCACCACCAACTCCCAGATAGTCTTTCCCTCCTCTGCTGGCAGCTcGTTGAAGCCATACTTTTCCAGGTTCTTCTTGAACTGCTCAGGCGAAAGGCCGGTTTCTTCAGTGACACCAAAGTAGGACAGAACCTCTGGTGACTCTTTCATGTGTGCGTTCTCCATCCTTGCTGAAACGGAGAGGTCTCTCtctaccccctctctctctctctctttctctctctctgggctGTTGCTCTCCTTTCGGAGCCCTGGACTGACAGAAAGTGagagagagagaggg

Function

symbol description
atp2a1 Predicted to enable ATP binding activity; P-type calcium transporter activity; and calcium ion binding activity. Acts upstream of or within several processes, including cellular calcium ion homeostasis; negative regulation of muscle contraction; and relaxation of skeletal muscle. Predicted to be located in several cellular components, including endoplasmic reticulum; endoplasmic reticulum-Golgi intermediate compartment; and sarcomere. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; gill; mesoderm; musculature system; and pectoral fin. Used to study Brody myopathy. Human ortholog(s) of this gene implicated in Brody myopathy. Orthologous to human ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1).

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207418 True 880 lncRNA 0.53 10 8551296 8611997

Neighbor

gene id symbol gene type direction distance location
LOC120573875 LOC104929518,LOC103375462,LOC108242957 coding downstream 30709 8513629 ~ 8520587 (-)
LOC120575363 LOC103375241,LOC104929519,LOC102212394,LOC101477022,LOC102794201,LOC102305637 coding downstream 39456 8506317 ~ 8511840 (-)
recql5 recql5,LOC102306769 coding downstream 46457 8488379 ~ 8504839 (-)
cdr2l LOC100699057 coding downstream 66604 8474480 ~ 8484692 (-)
nptx1l LOC103375324,LOC104929529,LOC100699861 coding downstream 249025 8297738 ~ 8302271 (-)
rabep2 rabep2 coding upstream 15086 8627083 ~ 8640435 (-)
si:ch211-11k18.4 LOC101474882,LOC102302894 coding upstream 39635 8651632 ~ 8659219 (-)
nudt9 nudt9 coding upstream 48305 8660302 ~ 8665654 (-)
mapk8ip3 mapk8ip3 coding upstream 127634 8739631 ~ 8768700 (-)
jpt2 hn1l coding upstream 160867 8772864 ~ 8778762 (-)
G153116 NA non-coding downstream 13340 8490056 ~ 8537956 (-)
G153112 NA non-coding downstream 81003 8468304 ~ 8470293 (-)
G153106 NA non-coding downstream 96628 8450022 ~ 8454668 (-)
G152925 NA non-coding downstream 258039 8293038 ~ 8293257 (-)
G152924 NA non-coding downstream 259081 8291900 ~ 8292215 (-)
G153130 atp2a1 non-coding upstream 280 8612277 ~ 8616112 (-)
G153142 NA non-coding upstream 32787 8644784 ~ 8645025 (-)
G153143 NA non-coding upstream 35086 8647083 ~ 8647291 (-)
G153139 NA non-coding upstream 47614 8659611 ~ 8684753 (-)
G153137 NA non-coding upstream 88112 8700109 ~ 8776266 (-)
G152952 NA other downstream 106915 8441179 ~ 8444381 (-)
LOC120574885 LOC103375378,LOC104925605,LOC104966930 other downstream 450898 8082138 ~ 8100398 (-)
grin2aa grin2a,LOC102780805 other downstream 827382 7569718 ~ 7723914 (-)
arhgdig NA other downstream 1749760 6772880 ~ 6801536 (-)
G152567 NA other downstream 1830653 6719784 ~ 6720643 (-)
G153172 mrps34,LOC102799846 other upstream 119400 8731397 ~ 8733019 (-)
natd1 natd1 other upstream 200333 8812330 ~ 8816305 (-)
tufm tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412 other upstream 238446 8850443 ~ 8857571 (-)
zgc:55558 p-ras,LOC105029053,LOC104950842,LOC104930345,LOC103392975,LOC101069736,LOC106606379,LOC103023536,LOC108413997 other upstream 283785 8895782 ~ 8907662 (-)
LOC120574599 NA other upstream 575253 9187250 ~ 9204006 (-)

Expression


Co-expression Network