tufm (tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412)


Basic Information

Item Value
gene id tufm
gene name tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8850443 ~ 8857571 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU207545
CAATTTTAAAATACGCAGTAGCCCTATataatccttaagcttaacacAATTTACCTGTACACGAGTCCTATGAAGCTGCGTTGGAAAAAATAGACACACTGCGTCTTTTTAAAACAAGTTAACTTCCCTTTAAACACAGATACATGAATGCGCTAGAAGAACATTCTAgctaacgtaacgttagctgatCTCACGAGTGGCAAGGAGGCTGCCATGCTGTACCGTAAACCTTGAACCAAATTGGCaagcaaaatgtttttccgaaCTCTTTTCTCATCTCTTGTCTCATTTAAGTATTCACATGTTCTATGCTAATTCAGTACTTTGAAATTATAATATTGTAAAACTGACAGTATTCTAACCTTGGCATTTAAAAGGCACAACAGCAAACTACCTTTTTCTATGCAAACTCCACCTATTAGCGTGTTTAAGGTAAATCAGTGACGTTTGTACGCACGGCGTTCAGAGAGTATCAGTAAAAGTAAGAGGAGAATAGTGCCTCATGAAATTCCAATTAATTGCTAATGTCCTCGTGTCGTGCAGACCCAATATATTGTTACAACATATGTGATTTTGATGATTGATTTAGATTTAGATATTAACGCATTTTTTAAAAGCGTGAAAAGTAAAAAGCAAACATTTCTCCACCAATGCCATAGATAAAATAAGCAAGTTGGAGAAATTAATAGAAAACAACAGcttttacaataactttaaaaACGAACTACTCTCTGATCTGCTCGTATCCTAAAACCTGCAGTTTGGCACTTTCTcttattaaataattgtaataagtCGTGTCTTGATGTGTATTATTATCATTAGTAGTAGTGGTATTGAAAACACAACACCATTGTGGTAGTTGTAGTATTCTATATTAGTATACCGTTGTAACCAATCTATGTTTGTACGAATAAAACGCCATTTTTGTCTGCTGCTTGAAGCTGCGTGGGCGACAGCTTTGGAGCTGGTGAGGTACTCTCTTGATTTTATGATCGTCTTGGTTTTGCCTCACcatccaagatggcggcgctTGTGGGATTGCGTGCATGTTTCTCCGCCCTTCAGCTGTCTTCGCCATGCCTCCTGCACAGCTCCTTTAAATTGTGTGCTGTGCCCCTGAGTCGGCGGACCTTTGCTGCAGAGGCTAAGAAGACCTACAGCAGGGACAAGCCCCATGTGAACATTGGAACAATTGGTCATGTTGATCACGGAAAGACAACCCTGACTGCAGCCATCACAAAAGTGCTCGCTGACGCTGGTGGTGCTAACTATAAAAAATATGAAGACATTGACAATGCCCCTGAAGAGAAGGCCAGAGGAATCACCATCAATGCCTCTCATGTAGAATACACCACAGCCAACAGACATTATGCTCACACAGACTGTCCTGGTCATGCTGACTATGTCAAGaacatgATTACAGGCACAGCTCAGATGGACGGCTGCATCCTGGTGGTGGCGGCCACTGACGGCCAGATGCCTCAGACACGAGAGCACCTCCTGTTGGCCAGGCAGATTGGCGTCGAGCATGTtgtggttttcatcaacaaggCCGATGCCGTGGAGGACAGGGAGATGGTGGAACTGGTGGAGATCGAGATCCGCGAGCTGCTCACAGAGTTCGGCTATGATGGCGAGAACACACCTGTTGTGATAGGCTCAGCCCTCTGCGCCCTGGAGAACAGAGAGCCTGAATCGTGTAAAT
>TU207546
CATTTGGCCAAAATCCAAAGATGTTTACTTCAAAAgcatagaaaagaaaaacaatacataTTAAAATTGTAGTTGTTCAAACCAGTAAATATGGGCCTTATCGCTTAAAAAAAATGGAGTTAAAACAATCAATAACCAAAAAAGACCGTCAGTGAGAACTAACTGACGCGTGGACTAGAAAGTCTGGAACAAGAGATGTGTGCGTGTAGGGCTTTCTGCCCAAAGCCTCCTTATGTTTGCAATGTATTATTAACAGGCCCTCACCTCCTCTGACATGGGTTCAACAGTGGCAGGTCCCTCTGCGGCTGAACCAACATCCACTGCTAGCTGCAGGACCCCCTGGAGGTTCTGGGGATATCTCCTAGTTGGTCTGTCTTCTGCCATGATGTGCGCCGCTGAGGAGCAAAACAAGGAACATCAACAAGACAATTGGACCACCGGATTCAGAAATGACGTGCAGTAGACAGGGCCTGTGAAAATTaatcaaaaatacagttttaaacTTTACTCTCTGATGACCCTGGCATTACCCTTGCACTACTTCTAAGGACCCCATTCGCAGCTAttcgacaCTGCGTGGGCGACAGCTTTGGAGCTGGTGAGGTACTCTCTTGATTTTATGATCGTCTTGGTTTTGCCTCACcatccaagatggcggcgctTGTGGGATTGCGTGCATGTTTCTCCGCCCTTCAGCTGTCTTCGCCATGCCTCCTGCACAGCTCCTTTAAATTGTGTGCTGTGCCCCTGAGTCGGCGGACCTTTGCTGCAGAGGCTAAGAAGACCTACAGCAGGGACAAGCCCCATGTGAACATTGGAACAATTGGTCATGTTGATCACGGAAAGACAACCCTGACTGCAGCCATCACAAAAGTGCTCGCTGACGCTGGTGGTGCTAACTATAAAAAATATGAAGACATTGACAATGCCCCTGAAGAGAAGGCCAGAGGAATCACCATCAATGCCTCTCATGTAGAATACACCACAGCCAACAGACATTATGCTCACACAGACTGTCCTGGTCATGCTGACTATGTCAAGaacatgATTACAGGCACAGCTCAGATGGACGGCTGCATCCTGGTGGTGGCGGCCACTGACGGCCAGATGCCTCAGACACGAGAGCACCTCCTGTTGGCCAGGCAGATTGGCGTCGAGCATGTtgtggttttcatcaacaaggCCGATGCCGTGGAGGACAGGGAGATGGTGGAACTGGTGGAGATCGAGATCCGCGAGCTGCTCACAGAGTTCGGCTATGATGGCGAGAACACACCTGTTGTGATAGGCTCAGCCCTCTGCGCCCTGGAGAACAGAGAGCCTGAATCGTGTAAAT
>TU207547
CAATTTTAAAATACGCAGTAGCCCTATataatccttaagcttaacacAATTTACCTGTACACGAGTCCTATGAAGCTGCGTTGGAAAAAATAGACACACTGCGTCTTTTTAAAACAAGTTAACTTCCCTTTAAACACAGATACATGAATGCGCTAGAAGAACATTCTAgctaacgtaacgttagctgatCTCACGAGTGGCAAGGAGGCTGCCATGCTGTACCGTAAACCTTGAACCAAATTGCTGCGTGGGCGACAGCTTTGGAGCTGGTGAGGTACTCTCTTGATTTTATGATCGTCTTGGTTTTGCCTCACcatccaagatggcggcgctTGTGGGATTGCGTGCATGTTTCTCCGCCCTTCAGCTGTCTTCGCCATGCCTCCTGCACAGCTCCTTTAAATTGTGTGCTGTGCCCCTGAGTCGGCGGACCTTTGCTGCAGAGGCTAAGAAGACCTACAGCAGGGACAAGCCCCATGTGAACATTGGAACAATTGGTCATGTTGATCACGGAAAGACAACCCTGACTGCAGCCATCACAAAAGTGCTCGCTGACGCTGGTGGTGCTAACTATAAAAAATATGAAGACATTGACAATGCCCCTGAAGAGAAGGCCAGAGGAATCACCATCAATGCCTCTCATGTAGAATACACCACAGCCAACAGACATTATGCTCACACAGACTGTCCTGGTCATGCTGACTATGTCAAGaacatgATTACAGGCACAGCTCAGATGGACGGCTGCATCCTGGTGGTGGCGGCCACTGACGGCCAGATGCCTCAGACACGAGAGCACCTCCTGTTGGCCAGGCAGATTGGCGTCGAGCATGTtgtggttttcatcaacaaggCCGATGCCGTGGAGGACAGGGAGATGGTGGAACTGGTGGAGATCGAGATCCGCGAGCTGCTCACAGAGTTCGGCTATGATGGCGAGAACACACCTGTTGTGATAGGCTCAGCCCTCTGCGCCCTGGAGAACAGAGAGCCTGAATCGTGTAAAT
>XM_039824633.1
TGTCTGCTGCTTGAAGCTGCGTGGGCGACAGCTTTGGAGCTGGTGAGGTACTCTCTTGATTTTATGATCGTCTTGGTTTTGCCTCACcatccaagatggcggcgctTGTGGGATTGCGTGCATGTTTCTCCGCCCTTCAGCTGTCTTCGCCATGCCTCCTGCACAGCTCCTTTAAATTGTGTGCTGTGCCCCTGAGTCGGCGGACCTTTGCTGCAGAGGCTAAGAAGACCTACAGCAGGGACAAGCCCCATGTGAACATTGGAACAATTGGTCATGTTGATCACGGAAAGACAACCCTGACTGCAGCCATCACAAAAGTGCTCGCTGACGCTGGTGGTGCTAACTATAAAAAATATGAAGACATTGACAATGCCCCTGAAGAGAAGGCCAGAGGAATCACCATCAATGCCTCTCATGTAGAATACACCACAGCCAACAGACATTATGCTCACACAGACTGTCCTGGTCATGCTGACTATGTCAAGaacatgATTACAGGCACAGCTCAGATGGACGGCTGCATCCTGGTGGTGGCGGCCACTGACGGCCAGATGCCTCAGACACGAGAGCACCTCCTGTTGGCCAGGCAGATTGGCGTCGAGCATGTtgtggttttcatcaacaaggCCGATGCCGTGGAGGACAGGGAGATGGTGGAACTGGTGGAGATCGAGATCCGCGAGCTGCTCACAGAGTTCGGCTATGATGGCGAGAACACACCTGTTGTGATAGGCTCAGCCCTCTGCGCCCTGGAGAACAGAGAGCCTGAATCGTGTAAATcaaaaTGGTGTTCACCTAGCCTATTTTGCTCAGGTATTGAGATGTTCCACAAGTCTCTGGATCGGGCAGAAGCAGGAGATAACCTGGGCGCTCTGGTCCGAGGACTGAAGAGAGAAGATATAAGGAGAGGGATGGTGATGTGCAAACCAGGATCCATCCAGCCTTACCAGAAAATCAAGGCCCAGGTGTATGTTCTAAGTAAGGAAGAGGGAGGCAGACACAAACCTTTTGTCACCAACTTCATGCCCGTCATGTTCTCTCTAACCTGGGACATGGCCTGCAGAGTCACTCTGCCCGATGAcaagGAAATGGTGATGCCAGGGGAGGACACCTCCTTGACGCTCACACTCCGCCAGCCAATGGTTTTGGAGAAAGGCCAGAGGTTCACTCTGAGAGACGGAAACAGAACCATCGGCACCGGCCTGGTCACAGACATCCTGGCAGTTAAAGATGAAGACCAGTGCAACTGGGGCTGAAGGGGAATCTCTGCAGATAGGACTGGGCTGGGGGAAGGGTGTGCTGGGGGTGCAGGGAGGAAGGGTCTGTGGATATCTGTGTCTGGTCAAATCAAATAATTATAgaaacatacaaatacagtacataaaccCATGCACAAACCTCAAACAGAAATTGACTCGAATGAATGCATGGCTCTGTTGTTCAGATTTACCCAACCAAAATACCTGAAATGTTTAGCACTGTCTTTATGTTTAAAGGCCAAACTGTCAAAAATCCGTCATTTATGTAATAAAATCTATTTAATAATG

Function

symbol description
tufm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; pectoral fin bud; and segmental plate. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 4. Orthologous to human TUFM (Tu translation elongation factor, mitochondrial).

NR:

description
elongation factor Tu, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207545 True 1708 TUCP 0.43 6 8853760 8856957
TU207546 False 1336 TUCP 0.49 7 8853760 8857571
TU207547 False 1007 TUCP 0.50 7 8853760 8856957
XM_039824633.1 False 1547 mRNA 0.50 9 8850443 8856029

Neighbor

gene id symbol gene type direction distance location
tmem11 tmem11 coding downstream 40093 8807234 ~ 8810350 (-)
dhrs7b dhrs7b coding downstream 44591 8799475 ~ 8805852 (-)
jpt2 hn1l coding downstream 71681 8772864 ~ 8778762 (-)
mapk8ip3 mapk8ip3 coding downstream 81743 8739631 ~ 8768700 (-)
nudt9 nudt9 coding downstream 184789 8660302 ~ 8665654 (-)
tmem86b LOC103374980 coding upstream 3591 8861162 ~ 8862826 (-)
gys1 gys1 coding upstream 9015 8866586 ~ 8881153 (-)
LOC120573900 NA coding upstream 52376 8909947 ~ 8914504 (-)
slc17a7a LOC104930346,LOC103374936,LOC102793338,LOC101484681,LOC100693903 coding upstream 67030 8924601 ~ 8942317 (-)
slc6a16a LOC103374926,LOC104930347,LOC104945282 coding upstream 85488 8943059 ~ 8955286 (-)
G153137 NA non-coding downstream 74177 8700109 ~ 8776266 (-)
G153139 NA non-coding downstream 165690 8659611 ~ 8684753 (-)
G153143 NA non-coding downstream 203152 8647083 ~ 8647291 (-)
G153142 NA non-coding downstream 205418 8644784 ~ 8645025 (-)
G153130 atp2a1 non-coding downstream 234331 8612277 ~ 8616112 (-)
G153274 NA non-coding upstream 203725 9061296 ~ 9111224 (-)
G153275 NA non-coding upstream 207425 9064996 ~ 9085687 (-)
G153455 NA non-coding upstream 339187 9196758 ~ 9203859 (-)
G153456 NA non-coding upstream 342087 9199658 ~ 9501467 (-)
G153462 NA non-coding upstream 362028 9219599 ~ 9219903 (-)
natd1 natd1 other downstream 34138 8812330 ~ 8816305 (-)
G153172 mrps34,LOC102799846 other downstream 117424 8731397 ~ 8733019 (-)
G152952 NA other downstream 406062 8441179 ~ 8444381 (-)
LOC120574885 LOC103375378,LOC104925605,LOC104966930 other downstream 750045 8082138 ~ 8100398 (-)
grin2aa grin2a,LOC102780805 other downstream 1126529 7569718 ~ 7723914 (-)
zgc:55558 p-ras,LOC105029053,LOC104950842,LOC104930345,LOC103392975,LOC101069736,LOC106606379,LOC103023536,LOC108413997 other upstream 38211 8895782 ~ 8907662 (-)
LOC120574599 NA other upstream 329679 9187250 ~ 9204006 (-)
LOC120574343 NA other upstream 331813 9189384 ~ 9190066 (-)
LOC120574654 NA other upstream 334415 9191986 ~ 9192402 (-)
LOC120574662 NA other upstream 359498 9217069 ~ 9224455 (-)

Expression


Co-expression Network