LOC120574652


Basic Information

Item Value
gene id LOC120574652
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9249829 ~ 9273114 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU207940
caggtgttgatggtcagactctgacagaatctgaaccagcggttaaaagacctggagaatcccacagattgacctgtacaacatctggattCACACTTAGTAGCTACTGGATGCACtggatcagacaggctcctggaaaaggactggagtggattgcTGCTGATACTAGTAGTAGTAGCAACTACTACTCTCAGTCAGTTCAAGGCCGGTTTACCGtctccagagacaacagcagagagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgagacccac
>unassigned_transcript_748
atgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatcccacagatttacctgtacaacatctggattCACACTTAGTAGCTACTGGATGCACtggatcagacaggctcctggaaaaggactggagtggattgcTGCTGATACTAGTAGTAGTAGCAACTACTACTCTCAGTCAGTTCAAGGCCGGTTTACCGtctccagagacaacagcagagagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgct

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04145 Phagosome
ko04664 Fc epsilon RI signaling pathway
ko05140 Leishmaniasis
ko05310 Asthma
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU207940 False 309 lncRNA 0.47 2 9249829 9273114
unassigned_transcript_748 True 345 V_gene_segment 0.46 2 9249839 9250269

Neighbor

gene id symbol gene type direction distance location
cabp5b LOC104945275,LOC103374841,LOC100700336,LOC104930357 coding downstream 201706 9043413 ~ 9048123 (-)
sez6l2 sez6l2 coding downstream 213001 9020086 ~ 9036828 (-)
kctd13 kctd13,LOC104945278 coding downstream 231089 9011223 ~ 9018740 (-)
hirip3 NA coding downstream 238898 9003265 ~ 9010931 (-)
antkmt LOC103374876 coding downstream 246678 8998880 ~ 9003151 (-)
LOC120574368 NA coding upstream 118451 9391565 ~ 9406804 (-)
LOC120574369 NA coding upstream 134740 9407854 ~ 9408482 (-)
LOC120574660 NA coding upstream 147038 9420152 ~ 9420698 (-)
LOC120574659 NA coding upstream 151395 9424509 ~ 9425046 (-)
LOC120574373 NA coding upstream 162178 9435292 ~ 9436866 (-)
G153462 NA non-coding downstream 29926 9219599 ~ 9219903 (-)
G153455 NA non-coding downstream 45970 9196758 ~ 9203859 (-)
G153274 NA non-coding downstream 138605 9061296 ~ 9111224 (-)
G153275 NA non-coding downstream 164142 9064996 ~ 9085687 (-)
G153137 NA non-coding downstream 473563 8700109 ~ 8776266 (-)
G153498 NA non-coding upstream 15189 9288303 ~ 9715061 (-)
G153527 NA non-coding upstream 86414 9359528 ~ 9359850 (-)
G153539 NA non-coding upstream 269004 9542118 ~ 9548305 (-)
G153481 NA non-coding upstream 329743 9602857 ~ 9603106 (-)
G153588 NA non-coding upstream 479145 9752259 ~ 9798267 (-)
LOC120574351 NA other downstream 6050 9243148 ~ 9243779 (-)
LOC120574593 NA other downstream 8487 9240830 ~ 9241342 (-)
LOC120574657 NA other downstream 9811 9239409 ~ 9240018 (-)
LOC120574350 NA other downstream 22114 9227266 ~ 9227715 (-)
LOC120574641 NA other downstream 27751 9221580 ~ 9222078 (-)
LOC120574591 NA other upstream 3354 9276468 ~ 9277002 (-)
G153486 NA other upstream 5263 9278377 ~ 9278925 (-)
G153519 NA other upstream 20763 9293877 ~ 9294304 (-)
LOC120574634 LOC102776372 other upstream 31923 9305037 ~ 9305586 (-)
LOC120574360 LOC102776372 other upstream 33650 9306764 ~ 9308379 (-)

Expression


Co-expression Network