G153623


Basic Information

Item Value
gene id G153623
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10020171 ~ 10024766 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208137
CAAAAACATTGTCAGCAGAGTTTGACTTGAAGTTGCCAGAGAAGCCTTGGTTcactgtgcagctgaaatttGTGTCTTTCTTCCAGTAATTTGTAGGGATAGAGAAGCTTCTGCTGATTGAATGGAGGCCTGGGGCTTCAGGAAGATCAACATACTGTTTGTCAGAGATGTCAGCACTGTTGGCCTGAAAGGTGACGTACAGGTCACGTGATGagagctgtgtgacatcacACTCCAGCACTGCGCTGTCCATCTTCAACAAATCTTTGAGGGATCTTCTAATCTCAACCAATGGGGCTGTAACTGCAGGCCCTTAATGatacagaaagaaaacaaagcatAATGTATTCTTTTAGTTTCTCTGCTGTCACAAGACGTCTGATTTTCATGTTGTATAGTCATCTTACCTGCAACACTCACAGTCCTCTCAGTGGATGGGAAGCACTTATGTTCAGCTTTACATGTTATAGACTTGAGTTGTTTCCATTCACTTAAAGAAACCGTCACTTCACTGACTATATGAGTTGTGTTTTTGACCTGGCTCGCTGTTGTAGTCGGTTTCCCATCCATCAGCCAGGTCACCTTGGCATCAAGAACAGTGCGGACCAAACATGTTGATTTCACGGATTCCGTGGATTCTGTCATCATTACTGTCTTAAAGCTGGGACTCTCCACGTGGATGAAAGGAGGGCCACTTGAATAAACTGACAGGAAACAAGGGAAACAAATCATGAAGCAACACTAGAATCCTGAGTAAACTACGTC
>TU208138
gagcaccatgtcatgggacctttaagggaaAGAAGAGTAACTCACCAAAAACATTGCCAGCAGAGTTTGACTTGAAGTTGCCGGAGAAGCCTTGGTTcactgtgcagctgaaatttGTGTCTTTCTTCCAGTAATTTGTAGGGATAGAGAAGCTTCTGCTGATTGAATGGAGGCCTGGGCCTTCAGGAAGATCAACATACTGTTTGTCAGAGATGTCAGCACTGTTGGCCTGAAAGGTGACGTACAGGTCACGTGATGagagctgtgtgacatcacACTCCAGCACTGCGCTGTCCATCTTCAACAAATCTTTGAGGGATCTTCTAATCTCAACCAATGGGGCTGTAACTGCAGGCCCTTAATGatacagaaagaaaacaaagcatAATGTATTCTTTTAGTTTCTCTGCTGTCACAAGACGTCTGATTTTCATGTTGTATAGTCATCTTACCTGCAACACTCACAGTCCTCTCAGTGGATGGGAAGCACTTATGTTCAGCTTTACATGTTATAGACTTGAGTTGTTTCCATTCACTTAAAGAAACCGTCACTTCACTGACTATATGAGTTGTGTTTTTGACCTGGCTCGCTGTTGTAGTCGGTTTCCCATCCATCAGCCAGGTCACCTTGGCATCAAGAACAGTGCGGACCAAACATGTTGATTTCACGGATTCCGTGGATTCTGTCATCATTACTGTCTTAAAGCTGGGACTCTCCACGTGGATGAAAGGAGGGCCACTTGAATAAACTGACAGGAAACAAGGGAAACAAATCATGAAGCAACACTAGAATCCTGAGTAAACTACGTC
>TU208139
gagcaccatgtcatgggacctttaagggaaAGAAGAGTAACTCACCAAAAACATTGCCAGCAGAGTTTGACTTGAAGTTGCCGGAGAAGCCTTGGTTcactgtgcagctgaaatttGTGTCTTTCTTCCAGTAATTTGTAGGGATAGAGAAGCTTCTGCTGATTGAATGGAGGCCTGGGCCTTCAGGAAGATCAACATACTGTTTGTCAGAGATGTCAGCACTGTTGGCCTGAAAGGTGACGTACAGGTCACGTGATGAGAGTTGTGTGACATCACACTCCAGCACTGCGCTGTCCATCTTCAACAAATCTTTGAGGGATCTTCTAATCTCAACCAACGGGGTTGTAACTGCAGGCCCTTAATGatacagaaagaaaacaaagcatAATGTATTCTTTTAGTTTCTCTGCTGTCACAAGACGTCTGATTTTCATGTTGTATAGTCATCTTACCTGCAACACTCACAGTCCTCTCAGTGGATGGGAAGCACTTATGTTCAGCTTTACATGTTATAGACTTGAGTTGTTTCCATTCACTTAAAGAAACCGTCACTTCACTGACTATATGAGTTGTGTTTGTGACCTGGCTCGCTGTTGTACTCGGTTTCCCATCCATCAGCCAGGTCACCTTGGCATCAAGAACAGTGCGGACCAAACATGTTGATTTCACGGATTCCGTGGATTCTGTCATCATTACTGTCTTAAAGCTGGGACTCTCCACGTGGATGAAAGGAGGGCCACTTGAATAAACTGACAGGAAACAAGGGAAACAAATCATGAAGCAACACTAGAATCCTGAGTAAACTACGTCTATTtaaa

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU208137 False 765 lncRNA 0.44 2 10020171 10023459
TU208138 False 810 lncRNA 0.44 2 10020171 10024766
TU208139 True 818 lncRNA 0.44 2 10021425 10024766

Neighbor

gene id symbol gene type direction distance location
LOC120574373 NA coding downstream 583305 9435292 ~ 9436866 (-)
LOC120574659 NA coding downstream 595125 9424509 ~ 9425046 (-)
LOC120574660 NA coding downstream 599473 9420152 ~ 9420698 (-)
LOC120574369 NA coding downstream 611689 9407854 ~ 9408482 (-)
LOC120574368 NA coding downstream 613367 9391565 ~ 9406804 (-)
cacna1aa NA coding upstream 36520 10061286 ~ 10149482 (-)
gtf2f1 gtf2f1 coding upstream 141946 10166712 ~ 10176011 (-)
luc7l3 luc7l3,LOC102798435 coding upstream 584232 10608998 ~ 10618057 (-)
LOC120574864 tob1 coding upstream 648576 10673342 ~ 10677290 (-)
spag9a NA coding upstream 714142 10738908 ~ 10772253 (-)
G153622 NA non-coding downstream 905 10018866 ~ 10019266 (-)
G153596 NA non-coding downstream 1312 9907240 ~ 10018859 (-)
G153597 NA non-coding downstream 177189 9794092 ~ 9842982 (-)
G153588 NA non-coding downstream 221904 9752259 ~ 9798267 (-)
G153629 NA non-coding upstream 157 10024923 ~ 10025127 (-)
G153630 NA non-coding upstream 551 10025317 ~ 10027699 (-)
G153631 NA non-coding upstream 9674 10034440 ~ 10038785 (-)
G153663 NA non-coding upstream 138678 10163444 ~ 10169439 (-)
G153671 NA non-coding upstream 261869 10286635 ~ 10294166 (-)
LOC120574648 NA other downstream 197178 9822145 ~ 9822993 (-)
LOC120574583 NA other downstream 283337 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 286976 9732686 ~ 9733195 (-)
LOC120574633 LOC102776372 other downstream 288931 9730610 ~ 9731240 (-)
G153584 NA other downstream 297547 9722181 ~ 9722624 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other upstream 327392 10352158 ~ 10390176 (-)
LOC120574455 NA other upstream 759346 10784112 ~ 10791565 (-)
LOC120574486 NA other upstream 1053779 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 1073550 11098316 ~ 11137528 (-)
G154033 NA other upstream 1178684 11203450 ~ 11225546 (-)

Expression


Co-expression Network