gtpbp1 (gtpbp1,LOC104924447,LOC102799794)


Basic Information

Item Value
gene id gtpbp1
gene name gtpbp1,LOC104924447,LOC102799794
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10352158 ~ 10390176 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208205
TCAGTTGTATTTTTAAATGGATTCAGTGCAAACTGGCAGCATCTGCTTATAAGCCCGTAATTGTAATGTTAGGAAAAGTGAGGTGATACAGTTTGACTAATAACGTATAGGCTATCTAGCGGAGCTGTACGGTAGCGTTTGGAGCTTGCGGCAAGTTACTGTGCTGGCTAGCGTGTTTACCAGCCGACGGGCAGCCGTCATCACAACAATCGGGACAGCTTGACATTTATTAACGTTACTGCAAGGCTGTCATAATAATGGCATCAATAGCAGCGGCGCATGAGCCGGGTATCAGCCCAGGCTCCATACCGCTGGCTGATGCTTTAGTCCCCGCGAGTATATTTGCTCCAGACCGGGGAGGATGCGGGGACGAGGACGAAGACGAGTGTTTTGAGGACGGGGACATGATCAATGGCGAGCCCGAGGGCCGTGGGGTTGACTTCACCAACAAGCTGGCACTTGTTAGCCCAAATGGAGAGCAGTATGACTCGTTACTTCGCCAGCTACGGGACAGGATGGAAGAGGGATGCGGAGAGACCATCTATATGGTTGGAATGGGCTCAGATGGTGGGGACTGGGGCCTGGATGAGAGGGATATGGAGGCCTCAGCAGCCACGGTGCGCTCTATGTGTGAGCAAGTGGATGCTGACC
>TU208206
TCAGTTGTATTTTTAAATGGATTCAGTGCAAACTGGCAGCATCTGCTTATAAGCCCGTAATTGTAATGTTAGGAAAAGTGAGGTGATACAGTTTGACTAATAACGTATAGGCTATCTAGCGGAGCTGTACGGTAGCGTTTGGAGCTTGCGGCAAGTTACTGTGCTGGCTAGCGTGTTTACCAGCCGACGGGCAGCCGTCATCACAACAATCGGGACAGCTTGACATTTATTAACGTTACTGCAAGGCTGTCATAATAATGGCATCAATAGCAGCGGCGCATGAGCCGGGTATCAGCCCAGGCTCCATACCGCTGGCTGATGCTTTAGTCCCCGCGAGTATATTTGCTCCAGACCGGGGAGGATGCGGGGACGAGGACGAAGACGAGTGTTTTGAGGACGGGGACATGATCAATGGCGAGCCCGAGGGCCGTGGGGTTGACTTCACCAACAAGCTGGCACTTGTTAGCCCAAATGGAGAGCAGTATGACTCGTTACTTCGCCAGCTACGGGACAGGATGGAAGAGGGATGCGGAGAGACCATCTATATGGTTGGAATGGGCTCAGATGGTGGGGACTGGGGCCTGGATGAGAGGGATATGGAGGCCTCAGCAGCCACGGTGCGCTCTATGTGTGAGCAAGTGGATGCTGACCTTATTACGCTC
>TU208212
AGGAAGTAAAAAGGCGTACACACCCACACCTTCCTTCCTTATTAATATTGCTGGTGTCAGTTGTATTTTTAAATGGATTCAGTGCAAACTGGCAGCATCTGCTTATAAGCCCGTAATTGTAATGTTAGGAAAAGTGAGGTGATACAGTTTGACTAATAACGTATAGGCTATCTAGCGGAGCTGTACGGTAGCGTTTGGAGCTTGCGGCAAGTTACTGTGCTGGCTAGCGTGTTTACCAGCCGACGGGCAGCCGTCATCACAACAATCGGGACAGCTTGACATTTATTAACGTTACTGCAAGGCTGTCATAATAATGGCATCAATAGCAGCGGCGCATGAGCCGGGTATCAGCCCAGGCTCCATACCGCTGGCTGATGCTTTAGTCCCCGCGAGTATATTTGCTCCAGACCGGGGAGGATGCGGGGACGAGGACGAAGACGAGTGTTTTGAGGACGGGGACATGATCAATGGCGAGCCCGAGGGCCGTGGGGTTGACTTCACCAACAAGCTGGCACTTGTTAGCCCAAATGGAGAGCAGTATGACTCGTTACTTCGCCAGCTACGGGACAGGATGGAAGAGGGATGCGGAGAGACCATCTATATGGTTGGAATGGGCTCAGATGGTGGGGACTGGGGCCTGGATGAGAGGGATATGGAGGCCTCAGCAGCCACGGTGCGCTCTATGTGTGAGCAAGTGGATGCTGACC
>XM_039824227.1
AATATTGCTGGTGTCAGTTGTATTTTTAAATGGATTCAGTGCAAACTGGCAGCATCTGCTTATAAGCCCGTAATTGTAATGTTAGGAAAAGTGAGGTGATACAGTTTGACTAATAACGTATAGGCTATCTAGCGGAGCTGTACGGTAGCGTTTGGAGCTTGCGGCAAGTTACTGTGCTGGCTAGCGTGTTTACCAGCCGACGGGCAGCCGTCATCACAACAATCGGGACAGCTTGACATTTATTAACGTTACTGCAAGGCTGTCATAATAATGGCATCAATAGCAGCGGCGCATGAGCCGGGTATCAGCCCAGGCTCCATACCGCTGGCTGATGCTTTAGTCCCCGCGAGTATATTTGCTCCAGACCGGGGAGGATGCGGGGACGAGGACGAAGACGAGTGTTTTGAGGACGGGGACATGATCAATGGCGAGCCCGAGGGCCGTGGGGTTGACTTCACCAACAAGCTGGCACTTGTTAGCCCAAATGGAGAGCAGTATGACTCGTTACTTCGCCAGCTACGGGACAGGATGGAAGAGGGATGCGGAGAGACCATCTATATGGTTGGAATGGGCTCAGATGGTGGGGACTGGGGCCTGGATGAGAGGGATATGGAGGCCTCAGCAGCCACGGTGCGCTCTATGTGTGAGCAAGTGGATGCTGACCTTAACGCTCGGGGCCGCAATGAGGCTGCCGGTTTGGTACGCGACTATCTAATCCGCGGGCGTGTGGGTGAGCTGGACTTCCTGGAGGTCAGGGTTGCAGTCGTGGGTAACGTGGATGCTGGTAAGAGTACTCTGCTGGGAGTGTTAACACACGGAGAGCTGGACAATGGCAGGGGCTTTGCCCGCCAAAAGCTCTTCAGGCACAAACATGAGATGGAGAGTGGCAGGACCAGCAGTGTGGGCAACGATATCCTGGGGTTTGACCAGGAGGGACAGGTGGTGAACAAACCAGATAGTCATGGAGGAAGCCTGGACTGGACCAAAATCTGTGAGAAGTCCTCCAAGGTGATAACCTTCATTGACCTGGCTGGCCATGAGAAATACCTCAAGACCACCGTGTTTGGGATGACCGGACACCTGCCTGACTTCTGCATGCTCATGGTGGGCAGTAATGCAGGTATCGTAGGGATGACCAAAGAGCACCTGGGCCTAGCCCTAGCCCTGAATGTGCCTGTGTTTGTAGTGGTAACCAAGATAGACATGTGTCCAGCCAACATCCTGCAAGAGACATTGAAGCTGCTCCAGAGGTTACTGAAGTCCCCCGGCTGTAGGAAGATCCCTGTCCTGGTACAGAACAAGGACGACGTCATAGTCACGGCGTCAAACTTCAGTTCGGAGAGGATGTGTCCCATCTTTCAGATCTCCAATGTGACCGGAGAGAACATGGACCTGCTCAAGATGTTTCTCAACCTGCTCTCCTCCAGGACCTCCTACCGTGACGACCAGCCCGCTGAGTTTCAGATAGACGACACCTACTCCGTACCGGGAGTGGGAACAGTGGTGTCAGGAACTACTTTACGTGGACTCATACGTCTGAATGATACAATGCTACTAGGGCCGGACCCCTTGGGCAGCTTCATCCCCATTGCCGTTAAATCAATCCACCGCAAAAGAATGCCCGTGAAGGAGGTTCGAGGTGGCCAGACTGCCTCATTTGCTCTCAAAAAGATCAAGCGTTCGTCCATAAGGAAAGGCATGGTGATGGTTTCCCCAAGGCTGTGCCCACAGGCCACTTGGGAGTTTGAGGCTGAGATCCTGGTACTGCATCATCCCACTACGATATCCCCCAGATACCAGGCCATGGTCCACTGTGGCAGCATAAGGCAGACAGCCACCATCTTGTCTATGAACAAAGACTGCTTACGGACAGGGGACAAGGCTTCAGTCCACTTCCGCTTCATCAAAACCCCGGAGTACCTGCACTGCGACCAGAGGCTGGTGTTCAGGGAGGGACGCACCAAGGCTGTGGGTACCATCACCAAGCTTTTGCAATCCACCAATAATCTACCATCAAATTCCAAACCTCCACAAATCAAAATGCAGTCTACAAAGAAGGCACCGCTGAGAAAAGAGGACGGCACCACGGCAGCCAGTGATGATGTAGCAACGATAGCACAGTCAGCAAACATCCCGAACGTGACACAACCGGGAGAGGGAGACGAAGACCCTCAGATAAAGGAGGGCAACAAAGAGAACAAGCCAAAGTCTGGAGGAGGTGGAAGAAGAAGGGGTGGCCAGAGGCACAAAGGAAAAGGCCAGAACAGCAGCACCAACTCCACAGCAGCTCCCTCCTCATCAGGAATAGGAGGCTCCTGAACTGCCCTCTTGCCCCTTGTaacaccccccccaccacactCCCTCTCTCCTACTATCACTCCACTAAGTGCTCTCATTCCACAAACCATGAAGGACACATATGTTTGGAGCAAGACACTCTCCTTAGTCTTATCACTCCTTGCCTTTTTGCACCAGGTCCcatagttttaattttttttcaaaagggaACACAAAGGGGTATGTCCCAAACCAAAAGGCATACACCCTTTAATGCATTTTAACATCAGCTGCCTTtactatttttaattgttttggtgttggaaagcagtgtgttttttttaggttaGCCTCACTCAGGAtgaggatttatttaattttatccaTATTTTATGTGTCTGTGAAATCTACAATTCAATCCTCTGGCTCAATGTCAGTAAAAGGGAGGGAGGCTAGACCGAAAACAAAGGTCCCGTACCAATATGAGCAGCTATAACGTGAAACTCCGCCATGCATTCCCTGTGTATTTGCAATGAAAAACAATTCATGTACCTATTTATACTGCATTatgtaaattagctgttagTCGTGCTCTGATTGAAAAGATGCCATTGtacaaaatgtatgcaaatcataaatgaatgtagcagagGGCACATAGTGATTTCAAATTCTAGATATATGGAAATAAGCGGTTACATTTTATAATTGTCAAGTTATTTATTTGGCATATATGCAGAAGGTTCACTGATGGTCATCGATTGTTCAACCTACTCTCACTTGCATGCTTAGATTCAGCAGTATCTAGCAGTGTCGGCCATGTTACAATCCTTATACAAATAGTGTCagtacaaacaaatacaacacataATCTTGTCACTCAAAGTTGCTCATGATGATTATAAGACATGCAGTAATTGCAGTGCTACTCGTAACTCTAGTACCCCATGCGTTATGGCCTGTTGCGGTTAACATGTTGTGACATTTTAAACACTTTGCAGCTAAGAAAACTGACCATTAATAAACAGGCTTTACTGAACTTTTAAA

Function

symbol description
gtpbp1 Predicted to enable translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in intermediate cell mass of mesoderm; intermediate mesoderm; lens; solid lens vesicle; and ventral mesoderm. Orthologous to human GTPBP1 (GTP binding protein 1).

NR:

description
PREDICTED: GTP-binding protein 1 isoform X1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K24887 GTPBP1; GTP-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU208205 False 651 TUCP 0.53 3 10360812 10390120
TU208206 False 662 TUCP 0.52 3 10360801 10390120
TU208212 False 707 TUCP 0.52 3 10360812 10390176
XM_039824227.1 True 3324 mRNA 0.49 16 10352158 10390133

Neighbor

gene id symbol gene type direction distance location
gtf2f1 gtf2f1 coding downstream 176147 10166712 ~ 10176011 (-)
cacna1aa NA coding downstream 202676 10061286 ~ 10149482 (-)
LOC120574373 NA coding downstream 915292 9435292 ~ 9436866 (-)
LOC120574659 NA coding downstream 927112 9424509 ~ 9425046 (-)
LOC120574660 NA coding downstream 931460 9420152 ~ 9420698 (-)
luc7l3 luc7l3,LOC102798435 coding upstream 218822 10608998 ~ 10618057 (-)
LOC120574864 tob1 coding upstream 283166 10673342 ~ 10677290 (-)
spag9a NA coding upstream 348732 10738908 ~ 10772253 (-)
LOC120574453 NA coding upstream 418131 10808307 ~ 10811425 (-)
LOC120574454 LOC106520401,LOC108239207,LOC102796162 coding upstream 422677 10812853 ~ 10820285 (-)
G153671 NA non-coding downstream 57992 10286635 ~ 10294166 (-)
G153663 NA non-coding downstream 182719 10163444 ~ 10169439 (-)
G153631 NA non-coding downstream 313373 10034440 ~ 10038785 (-)
G153630 NA non-coding downstream 324459 10025317 ~ 10027699 (-)
G153629 NA non-coding downstream 327031 10024923 ~ 10025127 (-)
G153734 NA non-coding upstream 204567 10594743 ~ 10595007 (-)
G153937 NA non-coding upstream 515179 10905355 ~ 10907608 (-)
G153950 NA non-coding upstream 560395 10950571 ~ 10959521 (-)
G153943 LOC104934589,LOC102791985 non-coding upstream 643030 11033206 ~ 11035516 (-)
G153987 NA non-coding upstream 678867 11069043 ~ 11073776 (-)
LOC120574648 NA other downstream 529165 9822145 ~ 9822993 (-)
LOC120574579 NA other downstream 612853 9697643 ~ 9739305 (-)
LOC120574583 NA other downstream 615324 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 618963 9732686 ~ 9733195 (-)
LOC120574633 LOC102776372 other downstream 620918 9730610 ~ 9731240 (-)
LOC120574455 NA other upstream 393936 10784112 ~ 10791565 (-)
LOC120574486 NA other upstream 688369 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 708140 11098316 ~ 11137528 (-)
G154033 NA other upstream 813274 11203450 ~ 11225546 (-)
LOC120574419 NA other upstream 1695809 12085985 ~ 12090981 (-)

Expression


Co-expression Network