G153987


Basic Information

Item Value
gene id G153987
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11069043 ~ 11073776 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208656
GACAGTGGCGCATTCATCACAAATCAAATCCAGTTGTGCTTTGAGGGACTGATCCTAAAAGAAATATTCATGATGAATGTTTCACTCAAATTAAAACCGGAAAAACCTCTTCCAAAGCTTTAATAACTACAAGCTaatgaaaatgtatatttttatttaactgtaTTATTTAGCAGATACAATTGTTCAATATTAACTGAGAATTAGAATACATTCCAGACTTTGACTGGGGTGATCCAAGTGGGACACTCACTTATACAGGTGGCTTGTAGTGTGTGCAGGtgaacacacaaatgcatgtcAGAATAGCCTGAACATTCTGTTTTCCAATACGCTTATCTACTTTAATTACTAACATTACAGTGTCTCACAGGTTCTGACATTCctctgtttttaaaatgtttatttaaaagataaATAGACCTACCAATCATACACATGATTGGTATATTACATCATACACATGTAATATAAAGCTTCCAGACTTTATTCTTTAAGTCTCAAAAATAAATTGTACctctaaatgtaggctacatacaacagaaaacaatgcacattcaaaaataaagtcaaagtataaagtaccaacattaaaatgaataagCCTGCATGGACAATACTGTATAAACAACTTCCAATTTCCAGCAAAATACAAACTAAGGTACCGCCTCTAACCTGGCGCACTGGGTGACCTGTGCCACTCCCCCCAGACACGGCCCTGTTAGCACATTAAACAGAAGTGATGAGCCCATACTTACCAGTGAAGACTCTCCTTTTGATACTCAAGTAAAGCATTAAATCATTAGTTTAAATGGAGGTCATTCCCATCAAAAACTATAGATGCTGATCACATTAAGAGGAACTAGTGGAAAGAAATGTGTTGCACACATATGTTTTCTGCCCCGACTTATTCCTCGATCATATTGAATGATTGGCTGCTATAAATGTAGAATGCTTAATTATTATGGGctcattttgttaaaaaaaaaaaaaaaaaggtgactaACTGTGTgagcacacaaaacacaggttGACGGAAGTTAAAATTACAGCAGTGGTACTTACAGCTTTAACTAACCTGTTACTGGTAGGGATTCTCCTTCATGTAAGTAGTTAAACTCAAATGATCAAGTGAGGACAGCTGATGAAACAAACAGGATTAAGTAGTAAagacattttcacattcataTGAAAAGTCATTTGTTCATCACAAACCTCCCAACAaacatttaatgtatttatggCTGTTTGTGACAGACTTTTGACCAAGCTTTAATATTTTAggcagtaaattgctgttgactGTAGGACTAGTTATTATAAAAAGCTTCTTAAGGAATACGGTTTCATTTAAAAGCTCCATACTTTCAGTATAAAGTTATTAAATGAAAACTGAGCTTCCTGATGCTCTCACCAACCAAGAATGGAGGATACAGGTTCAATGACACATTAGAGGTTAACAATCAAGAACATAATTTACATGCCTGAAGAAAATGGTGCCTAAAcgcaacaacacaaacaagggCCTTCACCAAACTTGCTGCAAGTTTGGGGACATTGAGATCCAACAGCGTGTAAGCTGTGAGGGCCCCTGGTAATGAATGAGAAGACAGAAAATGGTGAGACTTGCCTCAGGCTGAAACAGGGCTACACTGAGACAGGGCCTCAGCCAGTCCCCCATGGCATCGCTACAGGGAGAAGAGAAATCTGGGTTTTAGCGCTACAGCGACCCGGAATTATGCAGCTGTACAATGCACTTGCCACGTTCAGAGAatcaataaaaattaaaaatcaataTACTGTTTCTAgccaaaagaaaacatttaccaACATATTTCAACTGGAGTACAAACCTGCAGTGACGTCTCTTTTCCCACTAACATCCCGCAAAGAAGAGTCTTACATTTTTGCCACATTTTATTACAATACAGTTTTACAACAATACATATATCACTTCATTTAGTACTTCAACTATTTAAGGTTATGGGAGTACCTCTTCATTAAAACTATGCACATAAAACAGAATGAATGCATCAACAGTTATTTGAAGCCCTCACCAAACACAGTTGGGGACACAAAGTCCAACAGCACTACGTGCTGTGAAGGCCTCACTGTTAAGCTTAGAacagaaatgtatttacatAAAACTTGCCTTGATAAAGGTTGGGTACTGCTCATGTAACTCCAGCGCCTTCACAACACTACGAACCATATCTACTACACTTCTATAAACCTGAATGAAAcatgagaaggaaaaaaaagccacagaACAGAGAGGGTTTGAAACAACAGTACATAGTCTTGGTTAGGTACAGTGTAAATACTTCCCATGCGCTCTGTGATTCTTTTGTTTGCTGTTTATTCAGTGTCTCTTCCTCATTGCTCAGTAGTAGAATAAACAGTATGTTGTGGTACTAAAATACCAATACTGGTTTGTCTACTAGCAGCTGAGGACATTAGAAAAGGGTTGAGTGTCCAAACCTATTGAAGAGAAGATGGCAGGCTTCAGTAGCGGGCTCCAGGAGACATGACAGAGGGTCTCATACCCATGGGTGGCCGTGGAGGGGCTCCCTGGTACCCTGGGGGAACCACAGGAGGGGCCTGTCCGTACGGAAGCATCCCTCCTGGCATGTAGCCTGGCAGCCCCTGGGGTGGACCACCGTACTGGCCTGCGAAAACATGGGCAGACGGTGTATACCAGGTATGGAATGCCTCATGCTGGACTGCTGAGGAGCCATCATCCCACCCACGGAACCCGCTGACGGGGCAGCAGCACTGTTCTGGCCTGGGCGGAGAATACTGAGCTGGTACCTCTGCAACTGAGCGCGCAACTCTTCCTACAAGACACAGAAAGAAAACGAGGCGGAATAATTTGATGCTAAAACTCTCTAGCTCCACCAGGAGAAATAAACAAGaacattctttttatttattattttttattcaagaAAAGCCATTTATTGTCTTTAATGTAAACAGAGAGTATGACTTAAGCTATGATTAACAGCTAGTTACTgtaaaaactataaataaagACAGTTGCAGCTGGACTACTTACCAGTGAGATATCCTCATCAGGGTGGATCAACTTACTGGTTGCACTGGAGGTGGTGAGGGTGGCAGGCTTACTGGTCACAGTAGAGGGAGGTTTGGAGACCGTACTGCTGCCAGCATTGGTGCTGGCCACAGCTACGGTGGCCTGAGTATAGGCCGGGAATGTGGGCTTTGAGGGATcagaggaggtagaggaaggaGGGTGGGGGGACCCTGACTGCAGACTCTAGAGGGGGGAAGAGAAGAAAACACATTAGAGAGACTCTGCCGAAAGGCATTTACATTTCACAGGGGACACACTTTTAGTCATACTTTGAGGTTACTCCCATTCTTGAGTTTACATGTAGTAATTTGAAGCTGGCATTAATGCTACTGTTTGTACACAGGCTTAAGATGGATTGGTCTGGAATGTTCCAGTAATGGTTGCATCTCcactttttcctttctttacagtgtcatgtcacccaaaataaatagtaataataCTTTGTAACTTTCCCCTTAGTAAAGCCAAGCAGTAAAGAAATAGACAATCAACATGATTGCACCTACATTTTCCCAATTTAGTACCAGTTAGCAGGTTTGGTTTCAGAAGTGCTTGGGACATTAAAGTAAATATGTGAAAGCTATTTcatgtgtttatatattttacaaatacattcaattgcAGTATTATTAAAGACTTAGCACCACTTAAAGTTTTCTTGAAGAGATCTGATACTTTATGGTAGATAATATTGTATTTGGTTCTTTAAAACAAAGAGCCCTGCCTTTTACTGCCTTCTCTTTGACAATAAACACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208656 True 3856 lncRNA 0.40 2 11069043 11073776

Neighbor

gene id symbol gene type direction distance location
c15h17orf75 clg4h17orf75,clg8h17orf75,LOC102789701,LOC101467397,LOC102229770,LOC106934014,LOC106960136 coding downstream 5193 11057892 ~ 11063850 (-)
LOC120574053 LOC104934592,LOC103360693 coding downstream 52452 11008642 ~ 11016591 (-)
rln3a LOC104944611,LOC103360695 coding downstream 75013 10988167 ~ 10994030 (-)
il12rb2l NA coding downstream 81883 10975641 ~ 10987160 (-)
LOC120575016 tnpo2,LOC103360699 coding downstream 99287 10954170 ~ 10969756 (-)
LOC120574485 NA coding upstream 7943 11081719 ~ 11084573 (-)
LOC120574065 NA coding upstream 98745 11172521 ~ 11263721 (-)
LOC120573949 NA coding upstream 216090 11289866 ~ 11293711 (-)
LOC120573873 hn1 coding upstream 225431 11299207 ~ 11309655 (-)
LOC120573874 sumo2 coding upstream 236902 11310678 ~ 11318550 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 33527 11033206 ~ 11035516 (-)
G153950 NA non-coding downstream 109522 10950571 ~ 10959521 (-)
G153937 NA non-coding downstream 161435 10905355 ~ 10907608 (-)
G153734 NA non-coding downstream 474036 10594743 ~ 10595007 (-)
G153671 NA non-coding downstream 774877 10286635 ~ 10294166 (-)
G154036 NA non-coding upstream 198043 11271819 ~ 11272848 (-)
G154088 NA non-coding upstream 278427 11352203 ~ 11352565 (-)
G154115 NA non-coding upstream 393132 11466908 ~ 11467112 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 455920 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 566252 11640028 ~ 11641512 (-)
LOC120574455 NA other downstream 277478 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 678867 10352158 ~ 10390176 (-)
LOC120574648 NA other downstream 1246050 9822145 ~ 9822993 (-)
LOC120574583 NA other downstream 1332209 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 1335848 9732686 ~ 9733195 (-)
LOC120574486 NA other upstream 4769 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 24540 11098316 ~ 11137528 (-)
G154033 NA other upstream 129674 11203450 ~ 11225546 (-)
LOC120574419 NA other upstream 1012209 12085985 ~ 12090981 (-)
cep112 NA other upstream 1353728 12427504 ~ 12565471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G40617 slc45a1,LOC102791367 non-coding NC_053115.1 CM020912.1 20720758 ~ 20723134 (-)
striped catfish (Pangasianodon hypophthalmus) G213221 NA non-coding NC_047607.1 CM018553.1 18706417 ~ 18713626 (+)
bowfin (Amia calva) G43831 NA non-coding CM030125.1 CM030125.1 29119373 ~ 29121319 (-)