G154163 (bri3,LOC104946088,LOC103141671)


Basic Information

Item Value
gene id G154163
gene name bri3,LOC104946088,LOC103141671
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11529696 ~ 11557733 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208885
CAAAACCATAAGTagcattcatttttaattacaGTAACTCATATAAAAAGTAAGAACCTCAATCATAAGAGCGTGCGTAGTGTGTTTTCAAAAGCaagaagatatatatatatatattttgaatcaCTCCCACCCAGTTCTATCTCTTTTTCTTCTGCCATGGACAGTTATACAACAGCTTGCTGCGATGGAAGACGTAGACACAAAGATACTGCAGATGCAGGAACGTAGACATTCTCGGTTGATTGTCTGGTTTGGGAGGAATGGGGCAGGGTGACTTGTCACAGAGTACTAAGATAAAAATCCAGAGATTATACACATAATTGAAAGATTTCTTCAGCTTTTACTCTCAGCATGCTTCCCCAAAGTGAAACTCCGCAGATTAAAAGGAGTCTGCGCTTTGACATAAGAGTCCTCTTGAAGTAGAAGATGTCCGAACAGTGATTGAGGTTGTAAAGTCAAGGGCGTTTTCAGATTGTATGTACCTGAGGTCTGCATTGGCCCTGGAAAAGCACAACCCAGCAGAATAATCACCAAACAAACTGTCAGTGCAAATATGGCCCCAAGAAATAATATCAACAAAAATAGACAAAATGGTGCAGGCTTTCTGCCTGAGACAAGTCCATTGTTTCAGCCGGGACAGTTCACATCCAAGGATCTTTACACgtctttttctttgttaaagATGTTTCGGTTATTccctgtgacacactgagccaaaaacaaaacatttcaaataaaaagttTACATTTCCGGAAAAGGCTATTACGTCAGTGATCTACATGGATGCTGTGTAGAGTACAATATTAATAAGCACAAAAAGATGTATGCAGTGTGCCagcaaagacaaaaagaaagaaaaacccGAGCATGTGTCTCAGTTAATTCTGGCTTGAAAAAACATAAAGGAATCTGCTCAGATCATTAGATAACTGAGCTAAATCTACAGGAGAAATCATGACTGATGGAATCTCTGATGATCACTCAGCATGTAGTGAAGGCACTGACGACAGCTGGACACTTGCATATGCTAGAATATATCCTCAACTAGCAGACGCAAACACACGTGCCTctaataaaacatcataaatTGTGGTAATATCATCTTGATCATTTGCTGTATATAACATAATGGCAACAGCAATGTGCAATATTaataaaagacaacaaaataaaagacaaaaatgctagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcggcGCAAGGGAGCATGAGTAGGTGCATGAGCTGTGGTTTGGTCCCTCTAGCCAAAAGTGGCGCCACAGTTGGGACACCTTCTCTGACGCAGTGCGAAGCAGAAGAGGAGACCCAGGGGGAAGAAGAAGATGGCACACATGATCCCCAGGCAAGTGAAGTCATCCTCCAGGACACCAactctgcTGCAGGCAGGGCAGCCTCCCACCACCACTACAGACGGTTGTATGATGGTGTAAGTCCCGGTGTAGGGCTGCTGGGCTATGGCAGGGCCCATTTGGGCTGATGGGTATCCTATGGTTGACAGAAGGAAACGACATACATGTTATTGTGGACATAAATAaccacatcattttttttttaaataattaaacaaattaccatataatgtaattatataataatgttttgatttgtgtgactgtgttgtGAGTGCGTTTGTAGGAGAGTTGGGGATTCAGG
>TU208886
CAAAACCATAAGTagcattcatttttaattacaGTAACTCATATAAAAAGTAAGAACCTCAATCATAAGAGCGTGCGTAGTGTGTTTTCAAAAGCaagaagatatatatatatatattttgaatcaCTCCCACCCAGTTCTATCTCTTTTTCTTCTGCCATGGACAGTTATACAACAGCTTGCTGCGATGGAAGACGTAGACACAAAGATACTGCAGATGCAGGAACGTAGACATTCTCGGTTGATTGTCTGGTTTGGGAGGAATGGGGCAGGGTGACTTGTCACAGAGTACTAAGATAAAAATCCAGAGATTATACACATAATTGAAAGATTTCTTCAGCTTTTACTCTCAGCATGCTTCCCCAAAGTGAAACTCCGCAGATTAAAAGGAGTCTGCGCTTTGACATAAGAGTCCTCTTGAAGTAGAAGATGTCCGAACAGTGATTGAGGTTGTAAAGTCAAGGGCGTTTTCAGATTGTATGTACCTGAGGTCTGCATTGGCCCTGGAAAAGCACAACCCAGCAGAATAATCACCAAACAAACTGTCAGTGCAAATATGGCCCCAAGAAATAATATCAACAAAAATAGACAAAATGGTGCAGGCTTTCTGCCTGAGACAAGTCCATTGTTTCAGCCGGGACAGTTCACATCCAAGGATCTTTACACgtctttttctttgttaaagATGTTTCGGTTATTccctgtgacacactgagccaaaaacaaaacatttcaaataaaaagttTACATTTCCGGAAAAGGCTATTACGTCAGTGATCTACATGGATGCTGTGTAGAGTACAATATTAATAAGCACAAAAAGATGTATGCAGTGTGCCagcaaagacaaaaagaaagaaaaacccGAGCATGTGTCTCAGTTAATTCTGGCTTGAAAAAACATAAAGGAATCTGCTCAGATCATTAGATAACTGAGCTAAATCTACAGGAGAAATCATGACTGATGGAATCTCTGATGATCACTCAGCATGTAGTGAAGGCACTGACGACAGCTGGACACTTGCATATGCTAGAATATATCCTCAACTAGCAGACGCAAACACACGTGCCTctaataaaacatcataaatTGTGGTAATATCATCTTGATCATTTGCTGTATATAACATAATGGCAACAGCAATGTGCAATATTaataaaagacaacaaaataaaagacaaaaatgctagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggtaATTATgcagctacagccagcagccggttagcttagcttagggGAAGAAGCGTAAAACATGTTGTGGTTTTAAAAGGGGTTGTTGGTCGGACTATTTCTTTACCAGGTGCAGTAACATCCTGGAGCGTTGTCTCAGACTTCAGCTTATGCTAAGATAACCTTCTGCTGGCCAGAGCTTCATATTAACTGTACAGAGaggagtggtatcgatcttctcatatAACCactggcaagaaagcaaataagcccacAATGTgcctgtgtttaaaaaaaaaacaactaaaaaaacATGTAGGTTTGGTGTGACTGCATGCTCAACTTGCCTCCTTGTTCGATGTCAGAGTCGGTTAGATGTGTAAGGGAAAAGGTAGCGATGCTGGCCGGTGAAATGGAGAAACGGGAGTAGTTTGAGGAGCTGGTCCAGCTGGATTCCAGCACGCGCCCTGCTGCAGGGGGCGGAGAGGAAAAGCGAGATGCTGCAGATGAGGACATGGTCTTTGATACAGGGTCTTTATCCATCTTGGGCAGGAAGGCAGGTGCGGGGGAGAAGTCATCATCCCACTCAAAACCCCCACCTGCAGGGATTTAATACATGAGTGAGG

Function

symbol description
bri3 Predicted to be located in lysosomal membrane and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Orthologous to human BRI3 (brain protein I3).

NR:

description
PREDICTED: serine/threonine-protein kinase LMTK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208885 False 1698 lncRNA 0.41 2 11553495 11557733
TU208886 True 1856 lncRNA 0.42 2 11529696 11557733

Neighbor

gene id symbol gene type direction distance location
pvalb5 LOC104918844,LOC108239293,LOC100693182,LOC101480216,LOC102194634,LOC104946078 coding downstream 28472 11498316 ~ 11501224 (-)
LOC120575118 LOC106943715,LOC104918845,LOC103141685 coding downstream 33637 11493384 ~ 11496059 (-)
LOC120575117 NA coding downstream 37897 11489905 ~ 11491799 (-)
trnaq-cug_14 NA coding downstream 42771 11486854 ~ 11486925 (-)
pvalb8 LOC103469263,LOC103141687,LOC103361838,LOC103141679,LOC104946075,LOC102232223 coding downstream 44037 11482048 ~ 11485659 (-)
baiap2l1b baiap2l1,LOC103367811 coding upstream 128 11557861 ~ 11588233 (-)
nptx2a nptx2,LOC102777833,LOC101477389,LOC100706047 coding upstream 43600 11601333 ~ 11613286 (-)
srebf1 srebf1 coding upstream 413311 11971044 ~ 11983370 (-)
LOC120574261 tom1l2,LOC104918838,LOC103361751,LOC100706850,LOC102776585 coding upstream 426986 11984719 ~ 12008536 (-)
tbl3 tbl3 coding upstream 470294 12028027 ~ 12049270 (-)
G154115 NA non-coding downstream 62584 11466908 ~ 11467112 (-)
G154088 NA non-coding downstream 177131 11352203 ~ 11352565 (-)
G154036 NA non-coding downstream 256848 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 455920 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 494180 11033206 ~ 11035516 (-)
G154173 NA non-coding upstream 82295 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 85384 11643117 ~ 11649924 (-)
G154187 NA non-coding upstream 272211 11829944 ~ 11830183 (-)
G154231 NA non-coding upstream 411672 11969405 ~ 12012480 (-)
G154245 NA non-coding upstream 463794 12021527 ~ 12022190 (-)
G154033 NA other downstream 304150 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 392168 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 449089 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 738131 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 1139520 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 528252 12085985 ~ 12090981 (-)
cep112 NA other upstream 869771 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1177711 12735444 ~ 12737483 (-)
iqck NA other upstream 1397241 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1415527 12973260 ~ 13012781 (-)

Expression


Co-expression Network