G154948 (LOC104962285,LOC104925065)


Basic Information

Item Value
gene id G154948
gene name LOC104962285,LOC104925065
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14627750 ~ 14664671 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU209979
ttttattataaattaatgaaatgttatcatacaaatataaataagtGCAAAGTCGTATCAGTCTGCTTGCTTCGTTAAACAAATGTCTTCAAGCATTCACAGCCAGTGGTTTGGCTGGTAAAAGTACATCTTTATAAAAGACAGCATAAACACATCTTCACTCATGTAAACTCATGAAAATAAGATACATGTTGACTCTTCTCCTTATTGGTTGTTGTTTAATACATTCATTTGCAAGCAATGGCAATCCTGTAGTACTACCACATCTTTTCCCTCACCCCTGAAGCCATATTAAGCAGTGGTACTGTTCTCTCAAGTAAGATCCTCTAGGATTCAGTCAAGTTCAGGCAAGTTTGGCAAAAACCCTtcctcaaaataaaatatcaggaCTACATCTTCTTTCCACATTTAACGGTCTTAAAAAAATCTTATAAGATTCAGAATTGTTTTCCCCATCGTGGCTGGTGCTTATATACACCCAGAAGGCCATCGGTGTCCACTCATTTGTACTCTTAAGTTTCCACTGTCTGTGAATTTCCAGCGTGGTCAGAGACCCCACAATGCTGCGTGGACGTCTCGAATATGTCCAAGATTATCACCCGAGGTCGACAAAAAAAGCCAGCCTGAATGTAAAAGCCGATCCAGCTTTAATGGATGGATGATTTTCTGAGGCTGAGGCCTCACAGCACATTTGgttggcagcagcagcagaaggaaCCTGTGTGTCATCAGACTGTAGACAGCTTCGGTTTTCAGTAAGTTGTATGTCATCAGTGAGGCAGAGGAGGTTCTGCCTCTTTCATACCACCAGATAACAGCAGTGCTCGCTTTCTCTTGGCCCTGTTAGTGGATTAGTCCATGTGGGACTTAAGAGACTGATGCCCACTTTTCTGCGAGACGTACACACATCTTGTCAGTACGATAAACTGCTCCTTTACACAAGCACGATCTCGGGCTTGACTCTTTTGACTCTGCTTCATTGTTACTCCTCAGATAGAGCTGAAACCATCCCGTTTCTTTCATGTCTTTGCCCCTTCAAGAGCATCAGTCCAACACCTTTAGATAGGAGCGTCATACTCCTGGAGAAACTCCTTCAGAGGATGAGGAAGTTGGTCTCTTTGAGAAGAAATGTCCAAATGTCCATTGACTGTTTTTCTGCACAAGTGTTGCAAGGTGGATAAGATACAGGGGAGAGGTTTGATGAGCTCCAGGGGGATCTTCTCCCCTCCAGAGTAAATGTAGTAGGTATTCCCACTGCGAGTGTTCCCTTTGCTCTGAGGCATGTAGAAATGGACCAGCTTGAGGATGCAGTCAAAATGGGGAACAGATTGAATGTTCTTAGGGTCTGTTTGCAAGTAAAAAGAGGAAGTGTCACATTGGATACGCAGGTTCTTGGTCCCCGACGCCGTCTTCACGCTGAGGGCGAACAGGTGTCGGTTGTCGGAGCTGTCCCTGATGAGAAACGTGCCGGTGGTCTCGGTTGCCAGCATGGCGTTGGCCTCCTTCCCAGTGATGGCGCCCCAGTAGAAGCCACTCTCCTGGAGCTTGTGTAGCGTGGCGAGGACCATCTGGTACTGCGTTTTGGAGGTAAAAGTCTTGTAACGCTGAGGCAGCAGCATACTCGAGTCCAAGAGGCTGCTGCTCATTGCGGAGTCAAACTTGCTGTAAGTTACCATGGCGCTGTGCCCACTCTCTAGATAGCCTGGGGAGCACCGGGCGCCACACAGACAAGAGAAGAAGAGGTCGGGTCAAAGAGAGGCTCAAAGGGTTGTCGCTGAGGGCATGAAGAGGTCAGTCTGTCTGAAACACCTGAGGAGACAAGAGAAGGGGATGTGAGTTTTGAGTTCAGTGTGGAAAAGATGACACTAAACATAAAATGCAGTTTAAAAGTTTAACACTGCCATGACATAAAGTAATAGCAGATCTGTTTTATTCATGTTTAGATCTAACGgaacagctgcagcagctctaAGGGAAACTATTTTTCCAGATGTGGGAAGTTCTGTATATCATGCGTTTAAACATCCCTGGTGATGATGGGGAAATTGTCCCAGAGcgtcattgctttttttttgtcatcataaaacaaaacaatatagaCACAAACTGCATTAGTCCTGTCCTCTGTTTGAGAGGAGTTGTGGCTTTAACACTGTGTTCTGATCAAATGCTCCCATGTAAATTCTAGCCATTTCGGGGAAACTTTTTGTGCAATCTGCCCTCGGGACTCGGCCAATTCCAGTAAAGACAACGTAATCTAGATTGCGCAATTTACACGCCATAACCCGgcttcagttaaaaaaaaacctagCCTACCTCACTCAGACAAAAGCGCAACATTATTTATCCAAGTTTAGCCTATATGGAGTACATAGATGAGAAGTAGtatgcgaaaaaaaaaaaaaacagatcctCACCTTGAATGGTTTTTCCAAACTCGCtcgtttaaaaataaatccaagTGTGAatagatagatagatagatagatagtctgTTCACAGTCCAGCGTCTTTCAGGGTGACACAAATGTTTCGAAGTTCTTTGGCAATAAACTTCAGACTTCTAAAGTAGTTTTGTCGGTGTGTATCCCTGCTGAGCTGAGA
>TU209980
ttttattataaattaatgaaatgttatcatacaaatataaataagtGCAAAGTCGTATCAGTCTGCTTGCTTCGTTAAACAAATGTCTTCAAGCATTCACAGCCAGTGGTTTGGCTGGTAAAAGTACATCTTTATAAAAGACAGCATAAACACATCTTCACTCATGTAAACTCATGAAAATAAGATACATGTTGACTCTTCTCCTTATTGGTTGTTGTTTAATACATTCATTTGCAAGCAATGGCAATCCTGTAGTACTACCACATCTTTTCCCTCACCCCTGAAGCCATATTAAGCAGTGGTACTGTTCTCTCAAGTAAGATCCTCTAGGATTCAGTCAAGTTCAGGCAAGTTTGGCAAAAACCCTtcctcaaaataaaatatcaggaCTACATCTTCTTTCCACATTTAACGGTCTTAAAAAAATCTTATAAGATTCAGAATTGTTTTCCCCATCGTGGCTGGTGCTTATATACACCCAGAAGGCCATCGGTGTCCACTCATTTGTACTCTTAAGTTTCCACTGTCTGTGAATTTCCAGCGTGGTCAGAGACCCCACAATGCTGCGCGGACGTCT

Function

NR:

description
PREDICTED: suppressor of cytokine signaling 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209979 True 2604 lncRNA 0.44 2 14662048 14664671
TU209980 False 577 lncRNA 0.38 2 14627750 14664671

Neighbor

gene id symbol gene type direction distance location
LOC120575183 NA coding downstream 95100 14529438 ~ 14532650 (-)
notum1a notum,LOC104918326 coding downstream 138827 14481337 ~ 14488923 (-)
LOC120575481 myadml2,LOC103373375 coding downstream 148376 14476834 ~ 14479374 (-)
pycr1a LOC103373386,LOC104918329,LOC106533854 coding downstream 151960 14472095 ~ 14475790 (-)
LOC120575491 pcyt2,LOC103373415,LOC101487187 coding downstream 176095 14441803 ~ 14451655 (-)
LOC120575160 tmem235,LOC104962294,LOC100710065,LOC101469204 coding upstream 53322 14717993 ~ 14730049 (-)
fscn2a LOC104925063,LOC104962304,LOC103373227,LOC101170272 coding upstream 75866 14740537 ~ 14748030 (-)
LOC120575176 NA coding upstream 205271 14869942 ~ 14874632 (-)
LOC120575070 map2k6,LOC103373127,LOC100697168,LOC103392800,LOC102787166 coding upstream 272297 14936968 ~ 14950077 (-)
btbd17b LOC103373589,LOC104944234 coding upstream 285593 14950264 ~ 14954273 (-)
LOC120575037 NA non-coding downstream 290676 14330945 ~ 14337074 (-)
G154825 NA non-coding downstream 300814 14325973 ~ 14326936 (-)
G154788 NA non-coding downstream 528469 14078514 ~ 14099281 (-)
G154791 LOC100698953,LOC106518679,LOC103373486 non-coding downstream 539984 14085742 ~ 14087766 (-)
LOC120575453 NA non-coding downstream 681353 13936768 ~ 13946397 (-)
G155025 NA non-coding upstream 230708 14895379 ~ 14895624 (-)
G155039 NA non-coding upstream 298562 14963233 ~ 14963846 (-)
G155047 NA non-coding upstream 320463 14985134 ~ 14985364 (-)
G155106 NA non-coding upstream 491758 15156429 ~ 15162435 (-)
G155126 NA non-coding upstream 647409 15312080 ~ 15313592 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other downstream 83756 14533682 ~ 14543994 (-)
cenpx cenpx other downstream 98597 14526126 ~ 14529153 (-)
LOC120574967 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 other downstream 156320 14454837 ~ 14471430 (-)
med9 med9 other downstream 570396 14050738 ~ 14057354 (-)
tfap4 tfap4 other downstream 995914 13589483 ~ 13631836 (-)
LOC120574213 NA other upstream 101063 14765734 ~ 14790778 (-)
LOC120574214 bahcc1,LOC106528540,LOC108241329,LOC107083174 other upstream 130975 14795646 ~ 14828239 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other upstream 187268 14851939 ~ 14857580 (-)
ush1ga LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944 other upstream 214956 14879627 ~ 14889482 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other upstream 338342 15003013 ~ 15008712 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026841 socs3a coding NC_007114.7 CM002887.2 57423137 ~ 57425961 (-)