ush1ga (LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944)


Basic Information

Item Value
gene id ush1ga
gene name LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14879627 ~ 14889482 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU210075
GGtggattttaaataaaaaaaaatactaatgttTTTAATGCTCTATACTGATAGATCCATACATGTTGCTCTCACTACTGCACTCTGCTTACTATAGCCTATCTGCAGAGtagtttaaattaaacatgtGCAGAGTAGGATGTGCCTTTCTAAAGCAGGGCCAGAACTAGGCGTAGTTTTCAATTATTTCCTTATGCACCCTGAAAAAAAGGCAGGTAAAAGCAGCCATGCAGAGTAGGCTTTGTGACGGCCTAAACATTTATCAGGTTTAAGTTGAGGAACACTCTCAAAGATGGAAAAACTCAGCACTAATAATGAGGAGCATTTAAAGGAGAGTCAACACAACACAGACGTAAATGAGGAACCAAGGGATCCTACCATACCGACACGCTGCTCCCACAAGATGTGTTGTGTAACTCCTGCATGGATAGCCCCAGCAAGGCCCTAAAATCCTGCCTGACCTTTCTGGTTTCTTACTGCGAGGCACGTCAGCCAAATTTCAAAACCTCCATCTGTGGATCCCCTCCACAACATAGACTGTCGGACTTGTGAGGTTGTGGACggatgcttgtgtgtgtttggactgTAAGAACCAAGAGCACGAAGGGCAAACGACTGTGGGAGAGGCACAGACACAGATTGATGTCTTAACAACACAACTCATAGtacaattcttttcttttttttcaaatttgcttaagtttaaaattattttctttttatcatgtAAAGAtggcaaaatattaatttaggaTATGTCAGTAATGGCCTTGCATCTTTACAGCATCTGTTGTATATGTGAGGATTGCTTGTGCTGTAGACTGAGCTGCAGAAGAAACAAGAAGAAATCAGTCAGAGTGACTCAACAGCTGAGAAAGCAATTGGAAAGCTAC
>XM_039823774.1
CTGTTACCCACTGTGTGTACCGTGGCGTCCCTGGATACCATCGACGCGCTCCTCCACTGATCAGGAGCGACTGGCTCTGGGGGAACTGCAGGACAAACTGGCATTTTAGCCGGTCTGCTCCCACTACATCGCCGTATGACGACGACGACGATGATGGTGATGTTGATGAACCGGAATGGAGTCGAGCAGGGTGGATTAATTCTGCACCATGAATGACAGGTACCACAAGGCGGCCCGGGACGGCTACCTGGACCTGCTGAAGGAGGCAACTCGGAAGGATCTCAACGCGCCGGATGAGGATGGCATGACACCGACGTTATGGGCTGCTTATCACGGCAACCTGGAGGCTCTGCAGCTGATCGCGGCGAGGGGAGGAAACCCTGACAAGTGTGATATATGGGGGAACACGCCACTCCACCTGGCAGCTGCCAATGGTCACCTCAATTGCCTTTTCTTCCTGGTGTCTTTCGGTGCCAACATATGGTGCCTGGACAACGACTACCACACGCCGTTGGACATGGCCGCCACAAAGAATCACATGGATTGTGTCCGCTACTTGGACACCATCGCCACCAAGCAGACAGGCCTCAACACCAAGCTGGTCAGCAAGATGAAGGACCGGGCGTTTCGCGATGCTGAGCGGCGAATCAAAGAGTGTGTGAAGATGCAGAAGAAACACCACAAACGCATGGAGCGAAGGTTTCATAGGGAGACTTCTGAGGCTTCTGCATCAGATGTGATGAGCTTTTCCAGTTACACCAGCAGCTCTCTTAGCCACAAGCTGCACAACTTTAATGCAGCCACAGTCAGTGTGCCATATTCTCAGGCTACTCTCCATGCCACAAACCGAGGGAAGACAAAGATTCAGAGGAAGCTGGAGAAGAGGAAACAAGGagatgggacctttaaaatctaCGAGGATGGGAGGAAGAGTGTGCGCTCCCTCTCTGGACTTCAGTTGGGCAACGATGTTATGTTTGTCAAACAGGGGACCTACGTCAACCCAAAGGACCGTGGCCGCCGCAACATTCGTGACATGTTCCCAAGAGACAATTATGATGCCATTTCACGTGCCATGAGCGAGCCGGACCTCCACGGGACCGATGTGGACTACTCTGAGATCAGCACTGACTCAGGACATGATTCTCTGTTCAATAGACCCGGTCTGGGCACCATGGTTTTTAGGAGGAACTATGTGAGTGGGGGGATGTTCGACCTCGGTGGTCGGGATGAGGACAGTGCAGACAATAATGTGCGTTTACGCAGTCGGCTGCAGCAATACCCGAGTGCAGATGAAGACAGCATTGGCAGTGCACGCAGCCTGCAGGAGAGGAACGTGGAGGAGCTGCCCTGGGAAGAAATCGAATTAGGGCTGGACGATGATGATGAGGCTAACACAAGCCCGCTGGAGGTCTTCCTCGCCACACAGAGCATGAGTGactttttctccattttcaaGAGGGAAAAGATTGACCTTGAAGCACTGTTGCTCTGCTCTGACCATGACCTTAAGAGTATCCACATCCCCTTAGGACCAAGAAAAAAGCTCTTAGATGCTTGTAAGAGACGGCTGGAGACCATCGAGTACCCAGACTGCATTGAGGACACAGAACTGTGAGTGACGGGATTTTCAGTGATACAGCGTAGTGAGGAAGTATTTGGGCATATCGCTGTACTCCAGCACAGATCCTCTTCAGTTACAAACACAGTTTCTTCTTTTGCCTTAATTCTGTCCTGCAGATTATAAAAAGTTCTTGGTCCCTCCTGCTGTGTGCTCATTTAGGCTTAAAGGTCAGTGGAGCATTGTGGAGTAGATGTCACGTATGGACAGGGAGGACGTAATGATTTACCTCTGTGGTAACAGAGCAGAAAGGACACTGTTAAGATGAATATGTCAAGCAAGAAGAGACAAGTGTGAGACTCTTACAGTGTCTCGTTAACTTTAGGAGGATCACTGCAAATATCTCTGTATGTCGGTTGGTTGGAGTCCCCTGCACTGCATGGTTTAACAAACTAAAAGACAATTTGTCAGAGTGCAGTGCAGTGTTCACTGCATGCTATATGGCATAGTTAACAGAGAACTGATTGTGGGGTCTGTGTCCCCTGAGCGTTTTTGCCCCTATGGGGTAAATCCAACCACCTCATGTGCCTGCATTGCTCGTGCCTGTGCATTTGCTTAAAATTGTCTTTTGTCAAAAATAGCATTGACATTAACGTAATTGTAACTTCATTATTAACAGTTTCAATTACAACATTCGGAGCAATATTTTAACCCAGAAGAGCCACTCAGCTGTTTCCTTACTCACATTTCATCTCTGTACATGTTTACATACAGCGAGCCATGTCAGTCCAAGCGTGGCTCTCTGGCAAGGCAGGCCAATTGTTCATTGAGATAACTGTTCTGATTTACTGTAGTATTTTAAACTATATGAAAACCCAGTATATTTAGGTAATTTTATAATACACAAGTTACATATGTTGCAGTTCTATATTTTGCATGTTCAGTCCATAAACTAGGAGATTTATAAACCTTTCTATATCACTCATGTCAGTCTTCATAATATGACAGTCTTCGAACTGTTTGTATCtggagtagtttttttttttattatgtacaTCTGCGCAGGAGCATATGTTGATGTTTACTACTACTACATCTCAACCTTTTAACATTTAGGtggattttaaataaaaaaaaatactaatgttTTTAATGCTCTATACTGATAGATCCATACATGTTGCTCTCACTACTGCACTCTGCTTACTATAGCCTATCTGCAGAGtagtttaaattaaacatgtGCAGAGTAGGATGTGCCTTTCTAAAGCAGGGCCAGAACTAGGCGTAGTTTTCAATTATTTCCTTATGCACCCTGAAAAAAAGGCAGGTAAAAGCAGCCATGCAGAGTAGGCTTTGTGACGGCCTAAACATTTATCAGGTTTAAGTTGAGGAACACTCTCAAAGATGGAAAAACTCAGCACTAATAATGAGGAGCATTTAAAGGAGAGTCAACACAACACAGACGTAAATGAGGAACCAAGGGATCCTACCATACCGACACGCTGCTCCCACAAGATGTGTTGTGTAACTCCTGCATGGATAGCCCCAGCAAGGCCCTAAAATCCTGCCTGACCTTTCTGGTTTCTTACTGCGAGGCACGTCAGCCAAATTTCAAAACCTCCATCTGTGGATCCCCTCCACAACATAGACTGTCGGACTTGTGAGGTTGTGGACggatgcttgtgtgtgtttggactgTAAGAACCAAGAGCACGAAGGGCAAACGACTG

Function

NR:

description
PREDICTED: Usher syndrome type-1G protein homolog

GO: NA

KEGG:

id description
K21878 USH1G; Usher syndrome type-1G protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU210075 False 893 lncRNA 0.41 2 14879627 14882905
XM_039823774.1 True 3294 mRNA 0.47 3 14882288 14889482

Neighbor

gene id symbol gene type direction distance location
LOC120575176 NA coding downstream 4995 14869942 ~ 14874632 (-)
fscn2a LOC104925063,LOC104962304,LOC103373227,LOC101170272 coding downstream 131597 14740537 ~ 14748030 (-)
LOC120575160 tmem235,LOC104962294,LOC100710065,LOC101469204 coding downstream 149578 14717993 ~ 14730049 (-)
LOC120575183 NA coding downstream 346977 14529438 ~ 14532650 (-)
notum1a notum,LOC104918326 coding downstream 390704 14481337 ~ 14488923 (-)
LOC120575070 map2k6,LOC103373127,LOC100697168,LOC103392800,LOC102787166 coding upstream 47486 14936968 ~ 14950077 (-)
btbd17b LOC103373589,LOC104944234 coding upstream 60782 14950264 ~ 14954273 (-)
ccdc137 ccdc137 coding upstream 74813 14964295 ~ 14969477 (-)
LOC120573908 tspan10 coding upstream 83870 14973352 ~ 14975399 (-)
LOC120574429 LOC105009787 coding upstream 109291 14998773 ~ 15000144 (-)
G154948 LOC104962285,LOC104925065 non-coding downstream 214956 14627750 ~ 14664671 (-)
G154953 cyth1,LOC103392816,LOC101076412 non-coding downstream 232558 14640102 ~ 14647069 (-)
G154952 cyth1,LOC103140955,LOC102194078 non-coding downstream 242825 14633178 ~ 14636802 (-)
LOC120575037 NA non-coding downstream 542553 14330945 ~ 14337074 (-)
G154825 NA non-coding downstream 552691 14325973 ~ 14326936 (-)
G155025 NA non-coding upstream 5897 14895379 ~ 14895624 (-)
G155039 NA non-coding upstream 73751 14963233 ~ 14963846 (-)
G155047 NA non-coding upstream 95652 14985134 ~ 14985364 (-)
G155106 NA non-coding upstream 266947 15156429 ~ 15162435 (-)
G155126 NA non-coding upstream 422598 15312080 ~ 15313592 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other downstream 22047 14851939 ~ 14857580 (-)
LOC120574214 bahcc1,LOC106528540,LOC108241329,LOC107083174 other downstream 51388 14795646 ~ 14828239 (-)
LOC120574213 NA other downstream 88849 14765734 ~ 14790778 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other downstream 335633 14533682 ~ 14543994 (-)
cenpx cenpx other downstream 350474 14526126 ~ 14529153 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other upstream 113531 15003013 ~ 15008712 (-)
LOC120573850 LOC106674513,LOC106098575 other upstream 120316 15009798 ~ 15010340 (-)
LOC120574278 LOC104940298,LOC103361237,LOC102197797,LOC102781856,LOC104946382 other upstream 217275 15106757 ~ 15139853 (-)
metrnla metrnl,LOC102778978 other upstream 553642 15443124 ~ 15449517 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other upstream 828365 15717847 ~ 15724422 (-)

Expression


Co-expression Network