G155462 (colgalt1)


Basic Information

Item Value
gene id G155462
gene name colgalt1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16117119 ~ 16118492 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU210724
gCAGTGGCACAATGCATAACAAATACTATTGTGCTCCCATTAATACTCAAATCAAATTCCTGGGAGATTTAGTGTAGCCATATGGGGCAAAATCATGACAGGATAAATACTCTGTAAAATGTAAGATCATACAAACTGTATGCTCTCTTTTGCAGGGGCCTTTTATCAGGTCTTGCTCACCCAAAATGTTCAAATTCAGATATAACTGAAAATAATTAAGAGGTGGAGACTAATGTGTATTTGGATGCGGTTGGGTAGGTTCTTTTATAGGGAACTTTAAGGGCATTTATAACCATGCTACTCCCAAACCACAAGTTTGAGGCGTTAACAGCAGTTTGTCTCGTCTATAACCACGTCAACAGTGGGTTGAAACAATCCCAAAGTGATTGGGACACAGGAATAATGAACAGCATTTTATTATATACTGTGAATCTATGATTCTGACTTGACTGCAACAGttgcttgtgtgttttgttgctttGGTAAAACTCTGCTGCAAAGTGTTGGCTAATGATTATTCAAAACATAGCAATATGAagtttaaaaaagacaaaatactaaAGATCAAAGCAAAAGACATGCAGATGTTTCTCCTCTTGGACAAGTACATTTCGAATGATAACTATGACTATGACTATAACTATGATAAAATAGTTGATTTAAGAATGAATGTCTGCGAAAGTCTTGATTTTTGCTCAGTGACGTACAGTGTGGTAACAGCTCAATTCATTTGTAGTTTTGagaaatttataaaaaaaaacatttcagtgtAATCTCAAATTAGGACAATGTTAACTGCCTGATGACTGAAATGCAACAGTCCAGTTGCATTCTTTGCTAATATACAGGTTTGTTTCTGTATGACAGACAGAAGTTGGGTACTGCAAATGCCATTCCAAATGGCAAGTCTAGTGCCTTTATAAAATTAAATCTACAAACAAACAATGTGACAGAAAACACACCTGATCCCTTATTAACTTGTCACACATAGATAAATTAAAATCTTTCTACAACTTTGATGTCACATCCCTGCTATGATGCAAAATCTTAAGTATAAGAGACGAAACATAGGTGGTTTGTAAAATTTTGCAAGGCTCTCATTCAGTTCTTCTCATAGCTCGTCCCTTGCTGTGCTGTCCAAAGGCGACTGGAGCACATCTGAGTTCTGAGCCTCGGTGCTGATCTCAGCCTGCTCCCCAGTTTTTCCTGAGCGTGCTCTGTCCCAGTCTGTACGGACCTTGTCATTGTCCCACACTGTGGAGGTCTCAGTGTCGCTGATGTAGCCTTTGTCGCCTGTGTAGTGTGTTGGATACACTAGAAGAGGCTCAGCTGAAAATGCCTTCAGGTCCCTGGTTTCAAACTGTTCCATATAAT

Function

symbol description
colgalt1 Enables procollagen galactosyltransferase activity. Involved in positive regulation of collagen fibril organization. Located in endoplasmic reticulum lumen.

NR:

description
PREDICTED: procollagen galactosyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210724 True 1374 lncRNA 0.38 1 16117119 16118492

Neighbor

gene id symbol gene type direction distance location
LOC120574526 LOC103364137,LOC104952516,LOC108256828 coding downstream 9223 16106007 ~ 16107896 (-)
LOC120574529 NA coding downstream 12511 16101744 ~ 16104608 (-)
vac14 vac14 coding downstream 18130 16095711 ~ 16098989 (-)
trim35-13 LOC103364132,LOC102792268,LOC102305948,LOC101478242 coding downstream 24394 16089414 ~ 16092725 (-)
adgrl1a adgrl1,LOC103392844 coding downstream 126934 15894009 ~ 15990185 (-)
lpar2a lpar2,LOC104918571,LOC103392869 coding upstream 89758 16208250 ~ 16215393 (-)
brd4 LOC104952514,LOC103370560 coding upstream 102867 16221359 ~ 16229857 (-)
LOC120574499 LOC101164155,LOC101071797 coding upstream 164388 16282880 ~ 16296424 (-)
nr5a5 LOC104952484,LOC103370553 coding upstream 222602 16341094 ~ 16344963 (-)
soul5 NA coding upstream 227886 16346378 ~ 16348909 (-)
G155461 NA non-coding downstream 1597 16115108 ~ 16115522 (-)
G155460 NA non-coding downstream 5056 16110699 ~ 16112063 (-)
G155439 NA non-coding downstream 62363 16053990 ~ 16054756 (-)
G155359 NA non-coding downstream 225188 15891021 ~ 15891931 (-)
LOC120574547 NA non-coding downstream 291465 15822991 ~ 15825654 (-)
G155481 NA non-coding upstream 52431 16170923 ~ 16172305 (-)
G155493 NA non-coding upstream 86036 16204528 ~ 16223250 (-)
G155500 pet100 non-coding upstream 141327 16259819 ~ 16262030 (-)
G155507 NA non-coding upstream 160999 16279491 ~ 16280224 (-)
G155508 NA non-coding upstream 161891 16280383 ~ 16281568 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 301750 15813058 ~ 15815369 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other downstream 328604 15746791 ~ 15788515 (-)
LOC120574537 NA other downstream 371547 15741763 ~ 15745572 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other downstream 392697 15717847 ~ 15724422 (-)
metrnla metrnl,LOC102778978 other downstream 667602 15443124 ~ 15449517 (-)
LOC120574545 chchd5 other upstream 35295 16153787 ~ 16156067 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other upstream 111967 16230459 ~ 16259025 (-)
G155583 eif3g other upstream 450954 16569446 ~ 16642131 (-)
angptl6 angptl6 other upstream 503334 16621826 ~ 16626733 (-)
mgrn1b mgrn1 other upstream 893919 17012411 ~ 17023208 (-)

Expression


Co-expression Network