G155942 (ubfd1)


Basic Information

Item Value
gene id G155942
gene name ubfd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17712807 ~ 17715701 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU211366
CCCTAGTGCattcatttaattaaataaGTTTTATTTCTTTAAGAATAACTGAAGAAAAGTGTTAGCAATTTCTGTACAATTGTTTCATCATTTTCCCTTGGATTTGCTGAAAACCTTGAATGATCAACAGGGCTGAGAAATGTGCTGCCACATAGTGCACTTTTAGCCTAAAAACAATATGATTAGTCCACAGGCATCCGTCCGTTTCCTTCGAATGAATTCCAAGAAGTTCTTTAAGCCTCACAGTTGACTCcagtttcatttttcattggcTCCTCCTCTTAATCCCAGTTCAAAAAAAGAGGCACATTAGAAATACTGCCATTTTCCAAGGACTGTGTCTTTGATTGCATCGACAAACTGGACAGGCACCCAGTAGACCCAATATTGAGATGCTTCTGTTGGACCCAACTGAAAAGCATCATGTGATAGTCCTCATGGCCTTCGATGGGTTCAGACACTACGTTTTTAATGGAGCCCATTGGGACTTTCTCCGTTCTCTCCTTTGTTCCGATCCACAGCTGATCCTGCTCCAGTTTGAATGTGAGTCTAACTTTTCCTCCGGACTTGTTAAACATTCCGGATAAAGGCACCGTTGGTAATCGTTCCTTTGTTCCTTTAATAGATGGCATTATGTCATCTGGTTTACCTTTGTCCAAAACTTTTCTGTGTTGCTTTTGACTGCATAAAGGctctttcttgttttcttcGGCCTTAACTTCCTGCTGAACAGCCTCTTTGGGTGTATTCACAGCTAATACATCATTTATTGTAGATCCTACCACCattatttttgcaccatttgTAATCTTTATTTCACGTAGCGTCTTGTCCTCTGGAAGCAATCCTTTGTACATCACTTTCTGCATTGCAGGTGGAAGACCAGTGAGTGAGTGGATCCGCTCTTTTAGTTGGGCTCCGGTGTTGTCAACAGGAATTTTCAGATCATATTTATTCTTGTTCCAGATAATCTTCAAGTCCACCATCTCCTGTTCACCGTCTGCGTTGTCCCCATTGCTAATACTAGAGTCCTGAGTTGTGGCGTCTCCCGCATCTGTGTATGACGTAGTTTCTGTGTCAACTTTTTCAGCATCCTCACAGAGTGGCTCGGCTTCTTTTGGCTTTGCCTCGGTTTCCATTATGACTTCTTCACTTC
>TU211368
CTCAGTATCTTTGTGTTGCAGTGAATTTAGCAAAAAATAAGGCCGACTGTAATCCTACCCTTTGTTCCGATCCACAGCTGATCCTGCTCCAGTTTGAATGTGAGTCTAACTTTTCCTCCGGACTTGTTAAACATTCCGGATAAAGGCACCGTTGGTAATCGTTCCTTTGTTCCTTTAATAGATGGCATTATGTCATCTGGTTTACCTTTGTCCAAAACTTTTCTGTGTTGCTTTTGACTGCATAAAGGctctttcttgttttcttcGGCCTTAACTTCCTGCTGAACAGCCTCTTTGGGTGTATTCACAGCTAATACATCATTTATTGTAGATCCTACCACCattatttttgcaccatttgTAATCTTTATTTCACGTAGCGTCTTGTCCTCTGGAAGCAATCCTTTGTACATCACTTTCTGCATTGCAGGTGGAAGACCAGTGAGTGAGTGGATCCGCTCTTTTAGTTGGGCTCCGGTGTTGTCAACAGGAATTTTCAGATCATATTTATTCTTGTTCCAGATAATCTTCAAGTCCACCATCTCCTGTTCACCGTCTGCGTTGTCCCCATTGCTAATACTAGAGTCCTGAGTTGTGGCGTCTCCCGCATCTGTGTATGACGTAGTTTCTGTGTCAACTTTTTCAGCATCCTCACAGAGTGGCTCGGCTTCTTTTGGCTTTGCCTCGGTTTCCATTATGACTTCTTCACTTC

Function

symbol description
ubfd1 Orthologous to human UBFD1 (ubiquitin family domain containing 1).

NR:

description
PREDICTED: ubiquitin domain-containing protein UBFD1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211366 True 1156 lncRNA 0.42 6 17712807 17715701
TU211368 False 712 lncRNA 0.43 4 17712807 17713851

Neighbor

gene id symbol gene type direction distance location
LOC120574020 LOC104966028,LOC101485820,LOC102791617,LOC102312576 coding downstream 5841 17696977 ~ 17706966 (-)
hs3st2 LOC104918711,LOC103360497,LOC100699275,LOC101484787,LOC102311231 coding downstream 365264 17326071 ~ 17347543 (-)
gpr146 gpr146 coding downstream 519813 17181894 ~ 17192994 (-)
mrtfbb NA coding downstream 625527 17042448 ~ 17087280 (-)
aanat2 LOC106964066,LOC103143768,LOC106942159,LOC103143770,LOC103468705,LOC106934031 coding downstream 707263 17004147 ~ 17005544 (-)
zc3h7a zc3h7a coding upstream 3763 17719464 ~ 17733285 (-)
galr2b LOC104918738,LOC103356301 coding upstream 80628 17796329 ~ 17811422 (-)
zfand2a zfand2a coding upstream 120773 17836474 ~ 17840960 (-)
si:dkey-43p13.5 LOC104944070,LOC103356273 coding upstream 233056 17948757 ~ 17952475 (-)
ints1 ints1 coding upstream 245892 17961593 ~ 17980982 (-)
G155907 NA non-coding downstream 100775 17611768 ~ 17612032 (-)
G155900 NA non-coding downstream 140247 17572233 ~ 17572560 (-)
G155891 NA non-coding downstream 209614 17502655 ~ 17503193 (-)
G155890 hs3st4,LOC103360498,LOC108243684 non-coding downstream 210525 17501594 ~ 17502282 (-)
G155887 NA non-coding downstream 297457 17415106 ~ 17415350 (-)
G156026 NA non-coding upstream 267781 17983482 ~ 17983693 (-)
LOC120574111 NA non-coding upstream 272079 17987780 ~ 17992027 (-)
LOC120574888 NA non-coding upstream 420389 18136090 ~ 18139609 (-)
G156068 NA non-coding upstream 464138 18179839 ~ 18180108 (-)
G156070 NA non-coding upstream 493196 18208897 ~ 18209177 (-)
G155888 hs3st4,LOC104958756,LOC100711185 other downstream 296966 17415525 ~ 17415841 (-)
baiap3 baiap3 other downstream 447502 17227133 ~ 17265305 (-)
gper1 gper1,LOC104918709,LOC100699814,LOC101483480 other downstream 539523 17165482 ~ 17173284 (-)
unkl unkl,LOC102789129 other downstream 550642 17146108 ~ 17162165 (-)
polr3k polr3k other downstream 677767 17032985 ~ 17035040 (-)
trnat-cgu NA other upstream 30885 17746586 ~ 17746657 (-)
micall2a micall2,LOC102794725 other upstream 217867 17933568 ~ 17945535 (-)
psmg3 psmg3 other upstream 304244 18019945 ~ 18022986 (-)
mrm2 mrm2,LOC102797561 other upstream 543700 18259401 ~ 18263674 (-)
G156321 NA other upstream 1393198 19108899 ~ 19120932 (-)

Expression


Co-expression Network