LOC120574888


Basic Information

Item Value
gene id LOC120574888
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 18136090 ~ 18139609 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU211508
CCCGCTGGTGGGTGATGCAATGCAAGCTTGTCCGATTGACACAGAATGGCGGCCGGCTGGTCACAAACAATCTTGTATAACAGTTAAACGACATGATGTACGTGACGATTGGTCAGGTTGCAGCCTTGGAGAAACAGCCCCCAGATGGTCTTCAGGAGCTTTCTGGCACATCTCCAGGATGCTGACCCAGAGCATTGAAAGGTTGAGCACTGGCAGCGATCTGACTGATTCTGCCCAGCTGCTGACGTGCAGAGCAGCGCACATTGATACGAGGACAAAAATAGCTTGCTGGGATACACAGCTTGACGCAACTGTTCAGAATTAAAATCACTGCCAATTTATTCTGTCCAACGTCAACTTTCTATGAGATGACAACCGtcacagtgtagaaatatttAGTTATTGTGTATAAAGGATGTTTGAGTTAATTTCGTTTGATCTGTGCTATCACTGTCCTAAGTGGAGGCTTTAGAAAAAATCTAGTTTGTAAGACTGGTCGGGTGCAATCTATTTGAAATGAGAGCAGTTAAAATATTCAGAAAAGAAGTAACCCCAAGTCAAGTTATGTGTGCCCTCCTCATCTTcctgtgtaaaaaataaaaattaaataaataaataaaaaataagtcaaAACA
>XR_005641920.1
TCCGATTGACACAGAATGGCGGCCGGCTGGTCACAAACAATCTTGTATAACAGTTAAACGTCTGTGGTTACAGTGAAACAGCATTTGACGCAGAACGCATAACTTGGAGGTTTTTCTGCTGGCCTACATGATGTACGTGACGATTGGTCAGGTTGCAGCCTTGGAGAAACAGCCCCCAGATGGTCTTCAGGAGCTTTCTGGCACATCTCCAGGATGCTGACCCAGAGCATTGAAAGGTTGAGCACTGGCAGCGATCTGACTGATTCTGCCCAGCTGCTGACGTGCAGAGCAGCGCACATTGATACGAGGACAAAAATAGCTTGCTGGGATACACAGCTTGACGCAACTGTTCAGAATTAAAATCACTGCCAATTTATTCTGTCCAACGTCAACTTTCTATGAGATGACAACCGtcacagtgtagaaatatttAGTTATTGTGTATAAAGGATGTTTGAGTTAATTTCGTTTGATCTGTGCTATCACTGTCCTAAGTGGAGGCTTTAGAAAAAATCTAGTTTGTAAGACTGGTCGGGTGCAATCTATTTGAAATGAGAGCAGTTAAAATATTCAGAAAAGAAGTAACCCCAAGTCAAGTTATGTGTGCCCTCCTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211508 True 635 lncRNA 0.42 2 18136090 18139609
XR_005641920.1 False 617 lncRNA 0.44 3 18136143 18139579

Neighbor

gene id symbol gene type direction distance location
tmem184a tmem184a,LOC104945382 coding downstream 116832 17998143 ~ 18019258 (-)
ints1 ints1 coding downstream 155108 17961593 ~ 17980982 (-)
si:dkey-43p13.5 LOC104944070,LOC103356273 coding downstream 183615 17948757 ~ 17952475 (-)
zfand2a zfand2a coding downstream 295130 17836474 ~ 17840960 (-)
galr2b LOC104918738,LOC103356301 coding downstream 324668 17796329 ~ 17811422 (-)
snx8a snx8 coding upstream 128806 18268415 ~ 18280376 (-)
lfng lfng,LOC106925146 coding upstream 172960 18312569 ~ 18319994 (-)
rps11 rps11 coding upstream 212851 18352460 ~ 18354987 (-)
LOC120575519 NA coding upstream 213152 18352761 ~ 18352844 (-)
LOC120575518 NA coding upstream 213754 18353363 ~ 18353446 (-)
LOC120574111 NA non-coding downstream 144063 17987780 ~ 17992027 (-)
G156026 NA non-coding downstream 152397 17983482 ~ 17983693 (-)
G155941 NA non-coding downstream 367606 17696325 ~ 17768484 (-)
G155942 ubfd1 non-coding downstream 420389 17712807 ~ 17715701 (-)
G155907 NA non-coding downstream 524058 17611768 ~ 17612032 (-)
G156068 NA non-coding upstream 40230 18179839 ~ 18180108 (-)
G156070 NA non-coding upstream 69288 18208897 ~ 18209177 (-)
LOC120574766 NA non-coding upstream 732245 18871854 ~ 18900161 (-)
LOC120574767 NA non-coding upstream 747896 18887505 ~ 18890913 (-)
G156294 NA non-coding upstream 766737 18906346 ~ 18907262 (-)
psmg3 psmg3 other downstream 113104 18019945 ~ 18022986 (-)
micall2a micall2,LOC102794725 other downstream 190555 17933568 ~ 17945535 (-)
trnat-cgu NA other downstream 389433 17746586 ~ 17746657 (-)
G155888 hs3st4,LOC104958756,LOC100711185 other downstream 720249 17415525 ~ 17415841 (-)
baiap3 baiap3 other downstream 870785 17227133 ~ 17265305 (-)
mrm2 mrm2,LOC102797561 other upstream 119792 18259401 ~ 18263674 (-)
G156321 NA other upstream 969290 19108899 ~ 19120932 (-)
G156396 NA other upstream 1110117 19249726 ~ 19251256 (-)
si:busm1-163l24.3 NA other upstream 1802358 19941967 ~ 19947921 (-)
hexim1 LOC104946860 other upstream 2159415 20299024 ~ 20300946 (-)

Expression


Co-expression Network