XLOC_004850


Basic Information

Item Value
gene id XLOC_004850
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 33340215 ~ 33343285 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010966
tcaagactttcagaaaaaggaaaaaatagtgACAGATAATTGGCAGCCAGAAGAAAACATCAAATTTACCAAAAACAGCttaggagctacgttttttttgcagtttttgtttttgtgaatccaccagaggctgctgtgtacgctttttgagatctcaaatttctcttgcgagtgccattcgtgcctgctgttctctcgtaaatccaccagaggctgctgtcgactgaacgatagactgacccaccctcctccttgcctaaactcaaccaatagtgttttcaaaagcaccaattgcgTTTGCGTCAAAGTCTAGGTGGCAATGTGGAATTCATCATTTTCGGTGTCATGGTTGCAGTGGAGAGGCGGCTTCACTTTTGTCAAGTTAAACAGCTGCTGACTGCTAATGTTGCTTACGGCTAACACACGTCCATCCATAACAACATAAAACATTCACCCGCAAATGAGAGTAAGTTACGTTAAACATCTGCAtctataattataaaagtattttgttttatacGTGGCCGAAATGAGTGAATCTGCAGCACACGATTGTTGTTCTACTGAATCGTTTCATTTTAGTGAATGAGTCATTTTTTACGTGTCTGGCATGCTCCAGTACTTAAACAATGCATTGAATCAAAACGACTGCTGATGATCGACTCTAATGATCGAGCTTAACTAATGTTAATGTTATAAACGTGAATTTCAAACTCATAAACCGCTTGCAAGTTCTCGAATCATCAGCTCTGAACCGAGTCTCTGTCGGATGCGCCCAAAGCTGATGACACCTACTGAGACCGCGATTGACTTTGTAACAGAGACGAACTGATGGCATGAATAGAgggtataataatatatttaataactagTGCAAGCGGAATATGTTTACTCTGTGCAACAAGTCCATTGAACCGATTCATTGAATTGAACCGAGGGATGGAACAGATTTGCAGAATAAG
>TCONS_00010752
ccaccctcctccttgcctaaactcaaccaatagtgttttcaaaagcaccaattgcgTTTGCGTCAAAGTCTAGGTGGCAATGTGGAATTCATCATTTTCGGTGTCATGGTTGCAGTGGAGAGGCGGCTTCACTTTTGTCAAGTTAAACAGCTGCTGACTGCTAATGTTGCTTACGGCTAACACACGTCCATCCATAACAACATAAAACATTCACCCGCAAATGAGAAGTGCCTTGAAAATGAGCTCCAAGACTGCCAGgAGGTTGAACTTGAAGGCCACACAAATGAAATCATGAGGTTGTTGGTGATTCACAGCCCCACAGCAGAGAAGGACCCAGCAGATGAGTGTTGTcataattgtttaaattgtttgtgttgttaggtttaaattgtttaaattatgcATGTTTTGGCATTATTagacttttctttatttttctgtgattatGTAAGATTTATGTAACACTGTAATGCATTGTAACACTGTATTTTGCTTGAAATGTATCtctatattaattattcaaaatgtttttatactatttgttcaataaaaatgcaattaatagTATT
>TCONS_00010967
CTTTGTGTTAGAAGGGATCCATTTATAACCCTATTTTATCATTGTTGTTATTTACAGATCAATGATATTTTTTCTTAAGTTACAGTGCACAGCTCACAGAGTCACTGtattgtcactaaaatgcatGCCTTTGCTTATTTACATCAGAGTGCCTTGAAAATGAGCTCCAAGACTGCCAGgAGGTTGAACTTGAAGGCCACACAAATGAAATCATGAGGTTGTTGGTGATTCACAGCCCCACAGCAGAGAAGGACCCAGCAGATGAGTGTTGTcataattgtttaaattgtttgtgttgttaggtttaaattgtttaaattatgcATGTTTTGGCATTATTagacttttctttatttttctgtgattatGTAAGATTTATGTAACACTGTAATGCATTGTAACACTGTATTTTGCTTGAAATGTATCtctat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010966 False 962 lncRNA 0.40 2 33340215 33341296
TCONS_00010752 False 569 lncRNA 0.37 4 33340455 33343285
TCONS_00010967 True 431 lncRNA 0.34 2 33341378 33343226

Neighbor

gene id symbol gene type direction distance location
XLOC_004849 csnk1db coding upstream 3428 33320504 ~ 33336787 (+)
XLOC_004847 rbfox3a coding upstream 88750 32729470 ~ 33251465 (+)
XLOC_004848 BX936416.1 coding upstream 388319 32951782 ~ 32951896 (+)
XLOC_004846 NA coding upstream 813869 32431614 ~ 32526346 (+)
XLOC_004845 CT573006.2 coding upstream 923371 32402084 ~ 32416844 (+)
XLOC_004851 fasn coding downstream 18663 33361948 ~ 33472581 (+)
XLOC_004852 narf coding downstream 117509 33460794 ~ 33474029 (+)
XLOC_004853 slc9a3r1a coding downstream 141173 33484458 ~ 33537126 (+)
XLOC_004854 NA coding downstream 252617 33595902 ~ 33606588 (+)
XLOC_004855 NA coding downstream 259239 33602524 ~ 33605438 (+)
XLOC_004841 NA non-coding upstream 1153648 32170468 ~ 32186567 (+)
XLOC_004837 dre-mir-2196 non-coding upstream 1423163 31916943 ~ 31917052 (+)
XLOC_004863 NA non-coding downstream 1116384 34459669 ~ 34470463 (+)
XLOC_004867 NA non-coding downstream 1501157 34844442 ~ 34846842 (+)
XLOC_004869 CR854979.1 non-coding downstream 1538492 34881777 ~ 34881895 (+)

Expression


Co-expression Network