LOC120574766


Basic Information

Item Value
gene id LOC120574766
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 18871854 ~ 18900161 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU211835
CGGACAGCAACACATGAGACCGCACAGCCTCGGTGACTGAGCGGGACATGCCGCTTTGGATATTCACCAGAAATGCGGATAAAATCCCTTGAAGcacttcttctttctcctcGTCGCTCTCCTCTTCTTGCAGGACCCCTAAAATGTAGGCCCCATACACCTCGCGGTCCACTTCTAACGAGTCTAGCCGATCATTTAGCCAGCTTTCAAACTCCCCGGCGTCTGCCACGGCCGCAGCCATCTTGGCCCTTTGGGGTCTTTTCGGCGGCGCACGGCTGTCTTTTCTCATTGCCTGTTCAAAAAGTGTGTTACAGAAGATGACGTCAGTGATCCAACCTGTGCAACATGACGGGTGGGTGGACACCCGGCGAGGGACTAGTCACTAGCGGGCTGTGATTCTGCACTGAACTGGTCACACCATCGGCCCAGCTGTTTCTCCTGCCTCAAGCAGCAGACGCACATTCTCCCAGAGGTCCGAGCAGCCCAGCGGTGTCCTGAAGTTACCAGGACTGCGGGATGTATTGTGACAGACTTTAAATGTGAGGAAGAGGAGCCCTTGTCACCCATCACCTCTGTGAGATGAAAGGCCCCGAAAGCAGCCAGCCACCCTGCTGGACATAGCTCAGCTGTTATAAGAAGTGTTTGACAGGAGTGGCAGGTACTTGACCTTCTCTctggctttctctctctcacacttccGCTCTTCtttgctctctcttttctctcactcttACTCCGTGTCGCTGCCTCGCCACAGGCTAACCACTCTTTGCGCCACAGCCTCTTGGGTGTTGTCAGGGAGCTAACAGTCCCAGTGCTCTGTAGTACGCCTgcgtttgttgtttgtttgttccatCTATT
>XR_005641902.1
CTTCTAACGAGTCTAGCCGATCATTTAGCCAGCTTTCAAACTCCCCGGCGTCTGCCACGGCCGCAGCCATCTTGGCCCTTTGGGGTCTTTTCGGCGGCGCACGGCTGTCTTTTCTCATTGCCTGTTCAAAAAGTGTGTTACAGAAGATGACGTCAGTGATCCAACCTGTGCAACATGACGGGTGGGTGGACACCCGGCGAGGGACTAGTCACTAGCGGGCTGTGATTCTGCACTGAACTGGTCACACCATCGGCCCAGCTGTTTCTCCTGCCTCAAGCAGCAGACGCACATTCTCCCAGAGGTCCGAGCAGCCCAGCGGTGTCCTGAAGTTACCAGGACTGCGGGATGTATTGTGACAGACTTTAAATGTGAGGAAGAGGAGCCCTTGTCACCCATCACCTCTGTGAGATGAAAGGCCCCGAAAGCAGCCAGCCACCCTGCTGGACATAGCTCAGCTGTTATAAGAAGTGTTTGACAGGAGTGGCAGGTACTTGACCTTCTCTctggctttctctctctcacacttccGCTCTTCtttgctctctcttttctctcactcttACTCCGTGTCGCTGCCTCGCCACAGGCTAACCACTCTTTGCGCCACAGCCTCTTGGGTGTTGTCAGGGAGCTAACAGTCCCAGTGCTCTGTAGTACGCCTgcgtttgttgtttgtttgttccatCTATTTTCAATAAATACAATGGTGGAAGCCTTGTGGTGGCGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211835 True 861 lncRNA 0.54 4 18871894 18900161
XR_005641902.1 False 730 lncRNA 0.53 4 18871854 18899990

Neighbor

gene id symbol gene type direction distance location
LOC120573969 LOC103367898,LOC107091783,LOC108243773,LOC101475747 coding downstream 122488 18747011 ~ 18749366 (-)
apnl LOC104944055,LOC103367897,LOC108243777,LOC103142218 coding downstream 125383 18744792 ~ 18746471 (-)
ezh1 ezh1 coding downstream 143364 18713174 ~ 18728490 (-)
plekhh3 plekhh3,LOC102778524 coding downstream 192515 18641208 ~ 18679339 (-)
retreg3 fam134c coding downstream 239445 18624636 ~ 18632409 (-)
moto NA coding upstream 4281 18904442 ~ 18916596 (-)
LOC120574559 LOC103368153 coding upstream 39910 18940071 ~ 18942352 (-)
si:ch73-141c7.1 LOC104946389,LOC103368151 coding upstream 47623 18947784 ~ 18950703 (-)
hsd17b1 hsd17b1,LOC102788995 coding upstream 52341 18952502 ~ 18955127 (-)
atp6v0a1a atp6v0a1 coding upstream 97713 18997874 ~ 19017467 (-)
G156070 NA non-coding downstream 662677 18208897 ~ 18209177 (-)
G156068 NA non-coding downstream 691746 18179839 ~ 18180108 (-)
LOC120574888 NA non-coding downstream 732245 18136090 ~ 18139609 (-)
LOC120574111 NA non-coding downstream 879827 17987780 ~ 17992027 (-)
G156026 NA non-coding downstream 888161 17983482 ~ 17983693 (-)
G156294 NA non-coding upstream 6185 18906346 ~ 18907262 (-)
G156316 stat3,LOC104946400 non-coding upstream 153997 19054158 ~ 19056296 (-)
G156410 NA non-coding upstream 370340 19270501 ~ 19270765 (-)
G156414 NA non-coding upstream 437128 19337289 ~ 19337622 (-)
G156418 znf385c non-coding upstream 510031 19410192 ~ 19423558 (-)
mrm2 mrm2,LOC102797561 other downstream 608180 18259401 ~ 18263674 (-)
psmg3 psmg3 other downstream 848868 18019945 ~ 18022986 (-)
micall2a micall2,LOC102794725 other downstream 926319 17933568 ~ 17945535 (-)
trnat-cgu NA other downstream 1125197 17746586 ~ 17746657 (-)
G155888 hs3st4,LOC104958756,LOC100711185 other downstream 1456013 17415525 ~ 17415841 (-)
G156321 NA other upstream 208738 19108899 ~ 19120932 (-)
G156396 NA other upstream 349565 19249726 ~ 19251256 (-)
si:busm1-163l24.3 NA other upstream 1041806 19941967 ~ 19947921 (-)
hexim1 LOC104946860 other upstream 1398863 20299024 ~ 20300946 (-)
atxn7l3a atxn7l3 other upstream 2164599 21064760 ~ 21071507 (-)

Expression


Co-expression Network