G157162


Basic Information

Item Value
gene id G157162
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 21944193 ~ 21945964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU212976
GAACCAGCAGCAGTCACTTGGTTGCTGTCTTCCTCGACTGAAACATCACTTTTGAAACTGatCACTTGCAACAGTTGGAAACACTCACAGACTGGACTCCATAGGTGCTAAAGTGAAGCCACTTAAAGACTGGACTTAAATCAGgtccTCCCACAGACATCATCAGCTTTTTATAACAATGTTGTAACTTGTTTTTTTGAAAGCAAATGTTGACcagtattttaaataaaataaaacttctA
>TU212977
GAACCAGCAGCAGTCACTTGGTTGCTGTCTTCCTCGACTGAAACATCACTTTTGAAACTGatCACTTGCAACAGTTGGAAACACTCACAGACTGGACTCCATAGGTatgtaaaatGTGCTAAAGTGAAGCCACTTAAAGACTGGACTTAAATCAGgtccTCCCACAGACATCATCAGCTTTTTATAACAATGTTGTAACTTGTTTTTTTGAAAGCAAATGTTGACcagtattttaaataaaataaaacttctA
>TU212978
GAACCAGCAGCAGTCACTTGGTTGCTGTCTTCCTCGACTGAAACATCACTTTTGAAACTGGTAAGATTATATTGAATTTCACTGATTGCTTTTCGTGATAACATTTAGACTATTAGAGTAACGTAGTAATACAACTAACGTCACTGCAACCCACGGCCTTtctgttctgtgaatgaatAACGTTAACATTCGTCGCTTATAATGGTTAAACTTCAATTCGGTATGATTAACGCTAGCACTATCAAACTATGGGAGCGCATAAATTGTATGTCGGATTTAACACCGAAATGACGCTACAACTCAAATCATGTAGCCACTTGTAGGACACGTGTTGTCTGGTGTTGAACATGGTTTGGTTCGGTTACTACCGTGTTCCCCAGCAGCTGCATTAGCCGGTAACGCTGGGGCCTATTGGGTAACTCCACGTGGTAAGCATGTTAGCTAACATGGAACATTAGCATAGCTAACAGTGTTGTGAGGTAAAATTAGTAATCGCAAGATAAATACTAGCACAGCATGAATGATTGCATTTTAACGTAAATGTAATGTTTCTTGTATATGATGAGGTATCCACTTGTATGGATTTAGCTGTCCCTCTCCCCTGATGACTTGCACTGGGCTCTGAGTCTGTGTGAAGAAAAACGTGCGTCTTTGGCCCTGACAAGCCAGAGTTTCTGAGGAGAAAGTAAGCTAGTGTTAGTCTAGGTTATGGTCCTGACAATACAATAACTCAtgcttttgtccttttttttttattttgttttcagatCACTTGCAACAGTTGGAAACACTCACAGACTGGACTCCATAGGTGCTAAAGTGAAGCCACTTAAAGACTGGACTTAAATCAGgtccTCCCACAGACATCATCAGCTTTTTATAACAATGTTGTAACTTGTTTTTTTGAAAGCAAATGTTGACcagtattttaaataaaataaaacttctA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU212976 False 242 lncRNA 0.38 4 21944193 21945964
TU212977 False 253 lncRNA 0.37 4 21944193 21945964
TU212978 True 949 lncRNA 0.40 3 21944193 21945964

Neighbor

gene id symbol gene type direction distance location
cldni cldn32a,LOC103367325,LOC104930709,LOC103392689 coding downstream 124708 21816010 ~ 21819485 (-)
LOC120575110 NA coding downstream 154555 21786206 ~ 21789638 (-)
LOC120575109 NA coding downstream 158931 21778647 ~ 21785262 (-)
si:dkey-66i24.7 LOC102077857,LOC102782865,LOC102307613,LOC101474966,LOC103367331,LOC104934487 coding downstream 197767 21744086 ~ 21746426 (-)
pheta2 LOC103367340,LOC104943744,LOC104930231,LOC103392672 coding downstream 249391 21690695 ~ 21694802 (-)
mybpc2a NA coding upstream 177479 22123443 ~ 22180634 (-)
akt1s1 akt1s1,LOC102786700 coding upstream 275409 22221373 ~ 22226314 (-)
LOC120574468 NA coding upstream 349226 22295190 ~ 22303508 (-)
LOC120574469 NA coding upstream 394671 22340635 ~ 22346505 (-)
ifi35 NA coding upstream 424575 22370539 ~ 22376877 (-)
G157161 shank1 non-coding downstream 11247 21927972 ~ 21932946 (-)
G157146 NA non-coding downstream 97470 21846356 ~ 21846723 (-)
G157145 NA non-coding downstream 101815 21842106 ~ 21842378 (-)
G157144 NA non-coding downstream 104136 21839590 ~ 21840057 (-)
G157135 NA non-coding downstream 113082 21821622 ~ 21831111 (-)
G157201 NA non-coding upstream 119044 22065008 ~ 22067115 (-)
G157203 lrrc4b,LOC102785919 non-coding upstream 141947 22087911 ~ 22088424 (-)
G157205 NA non-coding upstream 153344 22099308 ~ 22099532 (-)
G157287 LOC108237768,LOC103368180,LOC100690364,LOC107378484,LOC103144947 non-coding upstream 266206 22212170 ~ 22219414 (-)
G157300 LOC100690097,LOC101482526,LOC102787595,LOC104954386 non-coding upstream 306966 22252930 ~ 22254670 (-)
G157147 cdhr2 other downstream 88177 21849095 ~ 21856016 (-)
LOC120575106 LOC103367329,LOC107658449,LOC107564019,LOC107674165,LOC104934486 other downstream 188002 21754741 ~ 21756191 (-)
G157096 LOC102782282,LOC100692966,LOC103367351,LOC107084765,LOC104927186,LOC102201015 other downstream 203490 21734382 ~ 21740703 (-)
LOC120574354 NA other downstream 225464 21715014 ~ 21718729 (-)
G157034 NA other downstream 321232 21621030 ~ 21622961 (-)
G157384 LOC102296880,LOC102202593,LOC101475579 other upstream 679822 22625786 ~ 22639389 (-)
LOC120575271 LOC104967158,LOC103366161 other upstream 862572 22808536 ~ 22834656 (-)
tmem100a tmem100,LOC104954564,LOC101486137 other upstream 1499398 23445362 ~ 23448560 (-)
cbx2 cbx2,LOC104963701 other upstream 1581480 23527444 ~ 23534409 (-)
G157645 LOC103366762 other upstream 2187084 24133048 ~ 24138023 (-)

Expression


Co-expression Network