XLOC_004853 (slc9a3r1a)


Basic Information

Item Value
gene id XLOC_004853
gene name slc9a3r1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 33484458 ~ 33537126 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009584
AGTTGCAACACAGTGAAGAGGCGGAGTGCGTGGCCCAGTTTTCACTTCACGAATACACTTTTCTGGTTTTCCTTCAACGTCAAGTTTACCCGGACTGCTGGTGTTGAGTAGGCTGCCTCTAAGTCTTAAACTTTCAAAATGTCCAGCGACCTCAGGCCAAAGCTGTGCGTCTTAGAAAAAGGGGACACCGGATACGGGTTTCATCTCCACGGCGAGAAGAACAAGCCCGGTCAGTTCATCCGTCATGTGGAGCCCGACTCTCCGGCCGCCGCCGCCGGTCTGCTGGCCGGGGACAAACTAGCTCTGGTCAACGGGGAAAATGTTGAGGACGAGAAGCATCAACAGGTGGTGTCCCGCATACGAGACACCGTGGGCAAACTGGAGCTCGTGGTGTTGAACGCAGAGACCGCAGAACTGCTGCTGAAGCACAATTTGAAGTGCCAGAAAGAGTATGTGACTGATGGGATACCAATTCCTGCTGGATCCGAGCCTGAAGATGAAGTGAAGAACGGGACATCATCCAGAGAATCCACCCCAGTCCCGGAGACAAATGGGGACATGCGCATAGATAGACTCAGTGTGAGCTCCAAGGACTCGAAGAACGAGCTGCGTCCACGTCTCTGTCACATAAAGAAAGGTGCCACCGGATATGGCTTCAATCTTCACACAGAGAAAACAAAACCCGGCCAGTACATCAGGGCGGTGGATGAGGACTCACCGGCAGAGAAATCTGGACTTCGGCCTCAAGATAAAATAGTGCAGGTCAATGGTATTTCTGTGCACACTATGCAGCATTCAGAAGTGGTGGCGGCCATTAAAGCAGGAGGAGACGAGACCAAACTTCTAGTGGTGGATCCAGAAGCAGACGCTTTCTTCATGAGCTGTGAAATCCTGCCAACCGAGGAGCATCTCACAGGTCCACTTCCAGAGCCTATTCCCAGACGTGAAGCAGAAGAGCAGGTGAATGGAAAAGTTGTCCAGGAGGAAAAGCCTAAAGTAGAAATGAGTCTGTCGAGCTCCAGCACCTCCTCTAACACCTCCACCTCTGCAGCTCCGGCTCCAGCATCAGCTCCGGCTCCAGCATCAGCTCCGGCTCCAGCATCAGCTCCGGCTCCAGCCATGGCTGCTGCACCACAGGAGAAGGTGAAGGAGAAAGCCTCCAGCGCAGACGCAGGCCTGGCTCTGAACATGTCTCTTCAGCAGGCTAAAGAGCGCGCTCATCAGAAACGCTCCAACAAGAGAGCTCCGCAGATGGACTGGAGCAAAAGAAACGAGCTCTTCAGCAACCTCTGAGCCTCCTGCGtgcctctgtctctctctgttgTTTTCTTCACTTCTCCTCCATCCCATCATGCCTCTCTTCTCCATCATCGTCAGTCTTTTAAATCCACTTGCACATGATTAGAAAACCCTTTACGTGTACGTTTTAAACCAGTGTTATTCTGCTTGAGATTTTCCTCTGTTGATTTCCtcgtgtttttaaaatatatatatctgatTTAACATTCCTGTATAATGTACAGCCtagaacttaattatttttattttaaaaaaagaaagcttCAATGATCTCTGTATATTTTCTTGCTTCGCTTAGCGTGATATTGATGCAGTATTGGTGACCCTTCAAGAGCGAGTTTGGGTGATTTCCAGCAGCACAAATCCAGATTTGAGTCTTTTATGTTTATGATCAGTTTATAACGTCAAATGTAGAAAGTCCAGCTTTATAATGTTTGTAAATGTGAACCGGGAGCCAATAACCACTGTCTGACTGAATGTTTTAGCTGATAAGGTTTTATTTAAAGTGCTTTGTGAACAGcacatgctaataatgtgagcgAGGAGCGGCTCTGAAACAAGCGTGTGGTGTGAGTTTACTTGTAAATCTTGCACAGTAGGCCTGTTCTGGTATCTTCGCTTCATTCCGTGAGACTTTAAGATGGTACATTTTTAACTCAAATACTGAAATATACCTGCTGTTAAAGTCTGTTTCACGCAGAAatgatttttgttattaaatattatgaaaagTC
>TCONS_00009585
CCCGGTCAGTTCATCCGTCATGTGGAGCCCGACTCTCCGGCCGCCGCCGCCGGTCTGCTGGCCGGGGACAAACTAGCTCTGGTCAACGGGGAAAATGTTGAGGACGAGAAGCATCAACAGGTGGTGTCCCGCATACGAGACACCGTGGGCAAACTGGAGCTCGTGGTGTTGAACGCAGAGACCGCAGAACTGCTGCTGAAGCACAATTTGAAGTGCCAGAAAGAGTATGTGACTGATGGGATACCAATTCCTGCTGGATCCGAGCCTGAAGATGAAGTGAAGAACGGGACATCATCCAGAGAATCCACCCCAGTCCCGGAGACAAATGGGGACATGCGCATAGATAGACTCAGTGTGAGCTCCAAGGACTCGAAGAACGAGCTGCGTCCACGTCTCTGTCACATAAAGAAAGGTGCCACCGGATATGGCTTCAATCTTCACACAGAGAAAACAAAACCCGGCCAGTACATCAGGGCGGTGGATGAGGACTCACCGGCAGAGAAATCTGGACTTCGGCCTCAAGATAAAATAGTGCAGGTATAATACACCATATTTAATCAGTCATTTAACAACTGTGTGTGAAGCTCAGGAATGTGCAGCAATCAGCTGTAAGCTTTTGGCCTTAGATAATGGATATGAGCAAGTGAATCAGTATTAAGTGATTCAGTCAGGGACAGACCACAGTAGAGTTGTTTTCAGGTGTACCTATGTTCTGCTCTGGCTTAGTTTGGAACATTTTTTGTTGGCAAACTTAAAACCAGACAGTATTGTTTCTAAAACATCTAATTAAGGCTGTGCAATATATATCgaatggacaaaataaaaagtctattgATTCATATTAaactctattttttattttgtggtgtCATAAATTTattgtttacagtaatattttact

Function

symbol description
slc9a3r1a Predicted to enable protein-membrane adaptor activity and signaling receptor binding activity. Acts upstream of or within several processes, including otic vesicle development; protein localization to membrane; and sodium ion homeostasis. Predicted to be located in several cellular components, including filopodium; microvillus; and ruffle. Predicted to be active in apical plasma membrane. Is expressed in several structures, including anterior neural keel; central nervous system; mesoderm; neural tube; and pronephros. Used to study ciliopathy and sensorineural hearing loss. Human ortholog(s) of this gene implicated in hypophosphatemic nephrolithiasis/osteoporosis 2. Orthologous to human SLC9A3R1 (SLC9A3 regulator 1).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006612 protein targeting to membrane biological_process
GO:0071599 otic vesicle development biological_process
GO:0021591 ventricular system development biological_process
GO:0043113 receptor clustering biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0005102 signaling receptor binding molecular_function
GO:0043495 protein-membrane adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-7 Predicted to enable protein-membrane adaptor activity and signaling receptor binding activity. Acts upstream of or within several processes, including otic vesicle development; protein localization to membrane; and sodium ion homeostasis. Predicted to be located in several cellular components, including filopodium; microvillus; and ruffle. Predicted to be active in apical plasma membrane. Is expressed in several structures, including anterior neural keel; central nervous system; mesoderm; neural tube; and pronephros. Used to study ciliopathy and sensorineural hearing loss. Human ortholog(s) of this gene implicated in hypophosphatemic nephrolithiasis/osteoporosis 2. Orthologous to human SLC9A3R1 (SLC9A3 regulator 1).

Ensembl:

ensembl_id ENSDARG00000000068

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009584 False 2033 mRNA 0.47 6 33484458 33537126
TCONS_00009585 True 901 lncRNA 0.46 2 33484683 33507829

Neighbor

gene id symbol gene type direction distance location
XLOC_004852 narf coding upstream 10429 33460794 ~ 33474029 (+)
XLOC_004851 fasn coding upstream 11877 33361948 ~ 33472581 (+)
XLOC_004850 NA coding upstream 141173 33340215 ~ 33343285 (+)
XLOC_004849 csnk1db coding upstream 147671 33320504 ~ 33336787 (+)
XLOC_004847 rbfox3a coding upstream 232993 32729470 ~ 33251465 (+)
XLOC_004854 NA coding downstream 58776 33595902 ~ 33606588 (+)
XLOC_004855 NA coding downstream 65398 33602524 ~ 33605438 (+)
XLOC_004856 mrpl43 coding downstream 280201 33817327 ~ 33819096 (+)
XLOC_004857 mfsd13a coding downstream 357270 33894396 ~ 33915123 (+)
XLOC_004858 trim8b coding downstream 379813 33916939 ~ 33935522 (+)
XLOC_004848 BX936416.1 non-coding upstream 532562 32951782 ~ 32951896 (+)
XLOC_004846 NA non-coding upstream 958112 32431614 ~ 32526346 (+)
XLOC_004845 CT573006.2 non-coding upstream 1067614 32402084 ~ 32416844 (+)
XLOC_004841 NA non-coding upstream 1297891 32170468 ~ 32186567 (+)
XLOC_004863 NA non-coding downstream 922543 34459669 ~ 34470463 (+)
XLOC_004867 NA non-coding downstream 1307316 34844442 ~ 34846842 (+)
XLOC_004869 CR854979.1 non-coding downstream 1344651 34881777 ~ 34881895 (+)

Expression


Co-expression Network