XLOC_004854


Basic Information

Item Value
gene id XLOC_004854
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 33595902 ~ 33606588 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010968
CTTCCAGCACACCTGAAGGACTTCCTGCTGGAGGGTGTCCCGTCTGTTCAGGATCCAGCAGCTGTGATCAGactgatctggctccatacattCTCGCTGACAACCATatgtaaaacatttataaacCTCTGAAATGACAGAATGAGAACATTTCAAGTGGAAACATTCTGGCTTTGACTGGAAAGCTGTGCTGATATTCAACTTTGcagtaaaaatagtttaaaagaaGACTTAAAAAAGGAAAAGATGTTCATGCATTTAATCTGATATcgatctggaaaataaaactgATTGCAGGTAAGCTAGTGAATTAGTTTGACATTCTGGAAGCAAAGTTTTTCAGCTAAACAGCtgaaatattgttataaataaactcaCTTGTGCATCACTAAATAAAAAACGAATGAAATATTCCCCCTCTGAATATGAGGTAAGTCGAGGCGATGACATTCACATTATAACCTGTTAAAACAGGCTCCGACAAGCTCTTCTGACAATGTAAAtaaactgcactaaaaatgtatacaaacacTAAGACCAAAGCTCTTTGTGTTCGAAACTGAAAAGATTTCGATAAAACCCTATTATTTCACAAAAtctaaaatacatgtaaaatcatgctaatttagCCCTCTGTTTGTTGCTTGTATCTTGCAGTTTTGAGGTTTCGAGGGTAATCAAAGAATAAAATAATCCCTTAATGAATGACCCTGTCCAAACCACAGCAGCATGCAGATGAACGTCCCTCACACAGTACAGATGAGCGCAGATCAAAGACACTGAAGAAAACAGCCCTCTGTGGCCTTCAATGGAGCCATGTGAAACATCATCTACTCCATCACTCTAATCAACAGGACAAGGACAGACGTGGGTCAGAAAGGAGAGTTCATTCCCAGCTTCGTCTCAAACTGAAGCTTCTGCCTCTTCTGGTAACGCACTCGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010968 True 943 lncRNA 0.39 2 33595902 33606588

Neighbor

gene id symbol gene type direction distance location
XLOC_004853 slc9a3r1a coding upstream 58776 33484458 ~ 33537126 (+)
XLOC_004852 narf coding upstream 121873 33460794 ~ 33474029 (+)
XLOC_004851 fasn coding upstream 123321 33361948 ~ 33472581 (+)
XLOC_004850 NA coding upstream 252617 33340215 ~ 33343285 (+)
XLOC_004849 csnk1db coding upstream 259115 33320504 ~ 33336787 (+)
XLOC_004856 mrpl43 coding downstream 210739 33817327 ~ 33819096 (+)
XLOC_004857 mfsd13a coding downstream 287808 33894396 ~ 33915123 (+)
XLOC_004858 trim8b coding downstream 310351 33916939 ~ 33935522 (+)
XLOC_004859 sfxn2 coding downstream 368477 33975065 ~ 33988885 (+)
XLOC_004860 cyth1b coding downstream 444846 34051434 ~ 34192955 (+)
XLOC_004848 BX936416.1 non-coding upstream 644006 32951782 ~ 32951896 (+)
XLOC_004846 NA non-coding upstream 1069556 32431614 ~ 32526346 (+)
XLOC_004845 CT573006.2 non-coding upstream 1179058 32402084 ~ 32416844 (+)
XLOC_004841 NA non-coding upstream 1409335 32170468 ~ 32186567 (+)
XLOC_004863 NA non-coding downstream 853081 34459669 ~ 34470463 (+)
XLOC_004867 NA non-coding downstream 1237854 34844442 ~ 34846842 (+)
XLOC_004869 CR854979.1 non-coding downstream 1275189 34881777 ~ 34881895 (+)
XLOC_004874 NA non-coding downstream 1451559 35058147 ~ 35059608 (+)
XLOC_004876 CU459210.1 non-coding downstream 1499987 35106575 ~ 35107998 (+)

Expression


Co-expression Network