LOC120573831 (hspa6,LOC100700083)


Basic Information

Item Value
gene id LOC120573831
gene name hspa6,LOC100700083
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1392492 ~ 1396468 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823690.1
GACCAGAGGCGAGTGAGGAAAGTATAAAATAACGGTGACGGCGAGGTTACCGGCATCGAGACTACGAGCACTGACCGGAGCAGCTACACGGCGAACACAAACCGGATTCTCTTCTCTTCATATTCTCATCTCTTAAAGAGGGAAACGTATTCTAAACAGCCGAGATGTCTGCAGCTAAAGGCGTATCGATCGGCATCGACCTGGGCACCACCTACTCCTGCGTGGGCGTTTTCCAGCACGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACTGACACCGAGAGGCTCATCGGCGACGCAGCCAAGAACCAGGTGGCTCTGAACCCCAGCAACACCGTGTTCGACGCCAAGAGACTGATTGGAAGAAAGATCGATGACCCGGTGGTGCAGGCGGACATGAAGCACTGGCCCTTCAAGGTGGTCGGAGACGGAGGGAAGCCCAAAATACAAGTGGAATATAAAGGGGAGATGAAAGCCTTCAACCCGGAGGAGATCTCCTCCATGGTGCTGGTGAAGATGAAGGAGATTGCCGAGGCCTACCTCGGCCAGAAGGTGTCCAACGCGGTCGTCACGGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCGACTAAAGACGCCGGCGTCATCGCGGGACTGAACGTCCTGAGGATCATCAACGAGCCCACCGCGGCCGCCATCGCCTACGGTCTGGACAAAAGCAAGTCGGGAGAACGCAACGTGCTGATCTTCGACCTGGGCGGAGGCACCTTCGACGTGTCCATCCTCACCATCGAAGACGGGATCTTTGAAGTCAAGTCCACGGCCGGAGACACTCACCTGGGCGGAGAAGACTTCGACAACCGCATGGTCAACCACTTCGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGAGAGCCCTGAGGAGGCTGCGCACGGCGTGCGAGAGGGCCAAGAGGACGCTGTCGTCCAGCTCGCAGGCCAGCATCGAGATCGACTCTCTGTGCGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGCTTTGAGGAGCTGTGCTCCGACCTGTTCAGGGGAACGCTGGAGCCGGTGGAGAAATCCCTGAAGGATGCCAAAATGGACAAAGGGCAGGTCCACGACATCGTCCTGGTCGGAGGCTCCACCCGAATCCCCAAAATCCAGAAACTCCTGCAGGATTTCTTCAACGGCAGGGAGCTGAACAAGAGCATCAACCCAGACGAGGCGGTGGCTTACGGCGCGGCCGTCCAGGCTGCCATTCTGTGCGGCGATACCTCGGGCAACGTTCAggacctgctgctgctggacgTGGCGCCTCTGTCCCTGGGCATCGAGACCGCCGGAGGAGTCATGACCTCGCTGATTAAACGCAACACCACCATCCCCACCAAACAAACGCAGACCTTCACCACCTACGCCGACAACCAGCCCGGCGTCCTCATCCAGGTCTACGAGGGGGAGAGAGCCATGACCAAGGACAACAACCTGCTGGGCAAATTCGACCTGACGGGAATCCCACCGGCTCCACGCGGGGTCCCGCAGATCGAGGTCACCTTCGACGTGGACGCCAACGGCATTCTCAACGTGTCCGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGACTGAGCAAAGAAGACATCGAGAGGATGGTGCAGGAGGCCGACCGATACAAAGCCGAGGACGACCTGCAGAGGGAGAAAATCTCTGCCAAGAACTCGCTGGAGTCGTACGCCTTCAACATGAAGAACACCGTGCAGGACGACAACCTGAAAGGCAAAATCAGCGAAGAGGACCAGAAGAAGCTGATCGAGAAGTGTGACGAGACCGTGGCCTGGCTGGAGAACAACCAGCTGGCAGATAAAGAGGAGTACCAGCACAAGCAGAAAGAGCTGGAGAAGGTGTGTAACCCCGTCATCAGTAAGTTGTACCAGGGAGGGATGCCTGCAGGCAGCAGCTGTGGAGAACAGGCACGCCAAGCCAGCTCCCAGGGGCCAACCATCGAGGAGGTGGACTAATGCAGCCCTTCATATAGACTCTGGTATCACTGGGACTTatatttttatcattatttcTTATTTGTGATGAAAGTTGTTGATGTTATAAACTTTGGGATAATATGACCCATGTTAAATGTACATTGCAGGACAATGCAATAAAGAtgaaacataaatataa

Function

symbol description
hspa6 Enables enzyme binding activity; heat shock protein binding activity; and unfolded protein binding activity. Involved in cellular response to heat and protein refolding. Located in centriole and cytosol. Colocalizes with COP9 signalosome.

NR:

description
heat shock 70 kDa protein 1

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823690.1 True 2250 mRNA 0.56 2 1392492 1396468

Neighbor

gene id symbol gene type direction distance location
taok2a LOC103363962 coding downstream 8764 1341826 ~ 1383728 (-)
cdipt cdipt,LOC103363963 coding downstream 58066 1325679 ~ 1334426 (-)
LOC120574280 NA coding downstream 90201 1298376 ~ 1302291 (-)
nlk1 nlk,LOC104935892,LOC100700355,LOC107394986,LOC103393459,LOC101063351 coding downstream 101422 1255759 ~ 1291070 (-)
LOC120573837 NA coding downstream 139127 1252104 ~ 1253365 (-)
LOC120575499 NA coding upstream 32697 1429165 ~ 1445323 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding upstream 104304 1500772 ~ 1509112 (-)
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding upstream 123918 1520386 ~ 1543410 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 224206 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 608408 2004876 ~ 2058639 (-)
G150679 NA non-coding downstream 50758 1235192 ~ 1341734 (-)
G150706 NA non-coding downstream 145262 1244928 ~ 1247230 (-)
G150684 NA non-coding downstream 173412 1218334 ~ 1219080 (-)
G150702 NA non-coding downstream 188664 1203506 ~ 1203828 (-)
G150685 NA non-coding downstream 198020 1192159 ~ 1194472 (-)
G150756 NA non-coding upstream 50205 1446673 ~ 1447187 (-)
G150763 NA non-coding upstream 74362 1470830 ~ 1471233 (-)
G150764 NA non-coding upstream 85275 1481743 ~ 1481973 (-)
G150765 NA non-coding upstream 89134 1485602 ~ 1488314 (-)
G150775 NA non-coding upstream 123222 1519690 ~ 1519906 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 70459 1302340 ~ 1322033 (-)
G150705 NA other downstream 152502 1238242 ~ 1239990 (-)
sh2b1 LOC102305267,LOC103374915 other downstream 178926 1153429 ~ 1213566 (-)
G150694 NA other downstream 218469 1170045 ~ 1174023 (-)
G150515 NA other downstream 368930 1022036 ~ 1023562 (-)
LOC120575422 LOC106675350 other upstream 60279 1456747 ~ 1460981 (-)
LOC120575421 LOC106675350 other upstream 64874 1461342 ~ 1465308 (-)
LOC120574289 NA other upstream 195221 1591689 ~ 1739925 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other upstream 209747 1606215 ~ 1620471 (-)
G150856 NA other upstream 327654 1724122 ~ 1739481 (-)

Expression


Co-expression Network